{"id":"https://openalex.org/W4393488124","doi":"https://doi.org/10.5281/zenodo.7439609","title":"Part 4: Dataset and script for a manuscript entitled 'Host-specific subtelomere: structural variation and horizontal transfer in asexual filamentous fungal pathogen","display_name":"Part 4: Dataset and script for a manuscript entitled 'Host-specific subtelomere: structural variation and horizontal transfer in asexual filamentous fungal pathogen","publication_year":2023,"publication_date":"2023-01-14","ids":{"openalex":"https://openalex.org/W4393488124","doi":"https://doi.org/10.5281/zenodo.7439609"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7439610","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7439610","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"volume":null,"type":"dataset","is_traditional":false,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7439610","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022987905","display_name":"Xiaoqiu Huang","orcid":"https://orcid.org/0000-0002-5692-6895","observed_orcids":["https://orcid.org/0000-0002-5692-6895"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiaoqiu Huang","raw_affiliation_strings":["Iowa State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022987905"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.6693999767303467,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.6693999767303467,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.07540000230073929,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.05460000038146973,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtelomeric-regions","display_name":"subtelomeric regions","score":0.8259999752044678},{"id":"https://openalex.org/keywords/structural-variants","display_name":"structural variants","score":0.8420000076293945},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"horizontal gene transfer","score":0.9729999899864197},{"id":"https://openalex.org/keywords/fusarium-oxysporum-f-sp-lycopersici","display_name":"Fusarium oxysporum f. sp. lycopersici","score":0.9369999766349792},{"id":"https://openalex.org/keywords/fusarium-oxysporum-f-sp-radicis-cucumerinum","display_name":"Fusarium oxysporum f. sp. radicis-cucumerinum","score":0.9959999918937683},{"id":"https://openalex.org/keywords/asexual-reproduction","display_name":"asexual reproduction","score":0.8489999771118164},{"id":"https://openalex.org/keywords/genome-assembly","display_name":"genome assembly","score":0.6129999756813049}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.684789776802063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6256281733512878},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.5454509854316711},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.5364986062049866},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.426339328289032},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3553127646446228},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.23759889602661133},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.2025366723537445},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12925571203231812},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06943210959434509},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.05964750051498413},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.053412556648254395},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:zenodo.org:7439610","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7439610","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.7439609","doi":"https://doi.org/10.5281/zenodo.7439609","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7439609","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.7439610","doi":"https://doi.org/10.5281/zenodo.7439610","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7439610","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7439610","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7439610","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4393772050","https://openalex.org/W4394035352","https://openalex.org/W4393759661","https://openalex.org/W7155502147","https://openalex.org/W7155506429","https://openalex.org/W4394188557","https://openalex.org/W7155533704","https://openalex.org/W4416694376","https://openalex.org/W6958992858","https://openalex.org/W2965934876"],"abstract_inverted_index":{"Datasets,":[0],"scripts":[1,90],"and":[2,47,66,89,104,148],"instructions":[3,88],"for":[4,91],"reproducing":[5,92],"some":[6,93],"of":[7,36,53,58,94,116],"the":[8,11,29,56,62,69,77,84,95,98,102],"results":[9,96],"in":[10,61,76,97,107],"manuscript.":[12,99],"The":[13,80,110],"file":[14,111],"subtelomere.tar":[15],"needs":[16],"to":[17,28,50,73],"be":[18,74],"unpacked":[19],"on":[20,68],"a":[21,34],"Linux":[22],"system.":[23],"After":[24],"unpacking":[25],"it,":[26],"go":[27],"directory":[30,85],"subtelomere,":[31],"which":[32,43],"contains":[33,44,113],"number":[35],"subdirectories.":[37],"One":[38],"subdirectory":[39,78],"is":[40,48],"named":[41],"data,":[42],"genome":[45],"assemblies":[46],"used":[49],"hold":[51],"datasets":[52,57],"short":[54,59],"reads;":[55],"reads":[60,118],"files":[63,106,115],"Data.One.Focb.tar,":[64],"Data.One.Focb-2.tar":[65],"reads.tar":[67,112],"four-part":[70],"depository":[71],"need":[72],"placed":[75],"subtelomere/data/reads/.":[79],"other":[81],"subdirectories":[82],"under":[83],"subtelomere":[86],"contain":[87],"Please":[100],"see":[101],"README":[103],"z.cmd":[105],"each":[108],"subdirectory.":[109],"44":[114],"paired-end":[117],"from":[119],"F.":[120,149],"oxysporum":[121,150],"f.sp.":[122,151],"lycopersici":[123],"isolate":[124,135,144,153,157,161],"Fol069":[125],"(SRA":[126],"accession:":[127],"SRR307106,":[128],"SRR307107,":[129],"SRR307113,":[130],"SRR307115,":[131],"SRR307123,":[132],"SRR307257,":[133],"SRR307266),":[134],"Fol072":[136],"(SRR307122,":[137],"SRR307092,":[138],"SRR307091,":[139],"SRR307090,":[140],"SRR307086,":[141],"SRR307281,":[142],"SRR307250),":[143],"Fol4287":[145],"(SRR7690004,":[146],"SRR3139043),":[147],"radicis-cucumerinum":[152],"Forc016":[154],"(SRR3139027,":[155],"SRR3139028),":[156],"Forc024":[158],"(SRR3139029,":[159],"SRR3139030),":[160],"Forc031":[162],"(SRR3139031,":[163],"SRR3139032).":[164]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2024-04-03T00:00:00"}
