{"id":"https://openalex.org/W4393476641","doi":"https://doi.org/10.5281/zenodo.10367202","title":"RDP Classifier 2.14 and the RDP bacterial and archaeal taxonomy training set No. 19","display_name":"RDP Classifier 2.14 and the RDP bacterial and archaeal taxonomy training set No. 19","publication_year":2023,"publication_date":"2023-08-23","ids":{"openalex":"https://openalex.org/W4393476641","doi":"https://doi.org/10.5281/zenodo.10367202"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10367202","doi":"https://doi.org/10.5281/zenodo.10367202","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10367202","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"volume":null,"type":"dataset","is_traditional":false,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10367202","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035000059","display_name":"Qiong Wang","orcid":"https://orcid.org/0000-0002-8770-4304","observed_orcids":["https://orcid.org/0000-0002-8770-4304"]},"institutions":[{"id":"https://openalex.org/I4210123226","display_name":"International Flavors & Fragrances (United States)","ror":"https://ror.org/02nma1c30","country_code":"US","type":"company","lineage":["https://openalex.org/I4210123226"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wang, Qiong","raw_affiliation_strings":["International Flavors & Fragrances (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Flavors & Fragrances (United States)","institution_ids":["https://openalex.org/I4210123226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5104055957","display_name":"James R. Cole","orcid":"https://orcid.org/0000-0003-1908-5588","observed_orcids":["https://orcid.org/0000-0003-1908-5588"]},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cole, James","raw_affiliation_strings":["Michigan State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Michigan State University","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9473000168800354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9473000168800354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.040699999779462814,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.00279999990016222,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rdp-classifier","display_name":"RDP classifier","score":0.9959999918937683},{"id":"https://openalex.org/keywords/bacterial-taxonomy","display_name":"bacterial taxonomy","score":0.7559999823570251},{"id":"https://openalex.org/keywords/archaeal-taxonomy","display_name":"archaeal taxonomy","score":0.9940000176429749},{"id":"https://openalex.org/keywords/16s-rrna-sequences","display_name":"16S rRNA sequences","score":0.9139999747276306},{"id":"https://openalex.org/keywords/prokaryotic-nomenclature","display_name":"prokaryotic nomenclature","score":0.7279999852180481},{"id":"https://openalex.org/keywords/species-identification","display_name":"species identification","score":0.7070000171661377},{"id":"https://openalex.org/keywords/qiime2","display_name":"QIIME2","score":0.5180000066757202},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6909999847412109}],"concepts":[{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6388937830924988},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.57439124584198},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.5627365112304688},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42362383008003235},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3932766914367676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2624266743659973},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1565396785736084}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.10367202","doi":"https://doi.org/10.5281/zenodo.10367202","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10367202","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.10367203","doi":"https://doi.org/10.5281/zenodo.10367203","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10367203","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10367202","doi":"https://doi.org/10.5281/zenodo.10367202","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10367202","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4392379111","https://openalex.org/W6950286368","https://openalex.org/W4393609050","https://openalex.org/W2152885278","https://openalex.org/W4394400572","https://openalex.org/W6968314091","https://openalex.org/W2031992077","https://openalex.org/W7096422886","https://openalex.org/W2045073446","https://openalex.org/W4399637700"],"abstract_inverted_index":{"RDP":[0,15,53,62,145,216],"Classifier":[1,16,63,217],"2.14":[2,65],"(August":[3],"2023)":[4],"Release":[5],"Note:":[6],"The":[7,25,45],"Bacteria":[8],"and":[9,32,61,72,82,92,142,192],"Archaea":[10],"hierarchy":[11],"model":[12],"used":[13,49],"by":[14],"has":[17,28,164],"been":[18,165],"updated":[19],"to":[20,50,55,107,137,140,153,167,177,183,213],"training":[21,56],"set":[22,57],"No.":[23,39,59],"19.":[24],"new":[26,104,147,161,209],"version":[27,38,58,64],"over":[29],"600":[30],"genera":[31],"2500":[33],"species":[34,200],"added":[35,166],"since":[36],"last":[37],"18":[40],"released":[41],"in":[42,170,211,219],"July":[43],"2020.":[44],"information":[46],"that":[47,98],"is":[48,95,174],"update":[51],"the":[52,86,101,117,138,144,155,168,179,215],"taxonomy":[54,193],"19,":[60],"came":[66],"from":[67,77],"publicly":[68],"available":[69,152],"scientific":[70],"articles":[71],"public":[73],"sequence":[74],"repository,":[75],"mostly":[76],"International":[78],"Journal":[79],"of":[80,100,116,119,122,157],"Systematic":[81],"Evolutionary":[83],"Microbiology":[84],"(IJSEM),":[85],"All-Species":[87],"Living":[88],"Tree":[89],"Project":[90],"(LTP)":[91],"GenBank.":[93],"It":[94],"worth":[96],"noting":[97],"most":[99],"phyla":[102,121],"have":[103],"names,":[105],"according":[106],"article":[108],"\"":[109],"Oren":[110],"A,":[111],"Garrity":[112],"GM.":[113],"Valid":[114],"publication":[115],"names":[118],"forty-two":[120],"prokaryotes.":[123],"Int":[124],"J":[125],"Syst":[126],"Evol":[127],"Microbiol.":[128],"2021":[129],"Oct;71(10).":[130],"doi:":[131],"10.1099/ijsem.0.005056.":[132],"PMID:":[133],"34694987.\"":[134],"In":[135,181],"addition":[136,182],"files":[139,210],"train":[141,178],"run":[143],"Classifier,":[146],"file":[148,162,173],"formats":[149],"are":[150,196],"made":[151],"accommodate":[154],"needs":[156],"users:":[158],"1.":[159],"A":[160],"trainset19_072023_speciesrank.fa":[163],"release":[169],"RDPClassifier_16S_trainsetNo19_rawtrainingdata.zip.":[171],"This":[172],"NOT":[175],"needed":[176],"classifier.":[180],"sequences,":[184],"it":[185],"contains":[186],"genus,":[187],"species,":[188],"strain,":[189],"type":[190],"status":[191],"rank,":[194],"which":[195],"useful":[197],"for":[198],"closest":[199],"identification":[201],"using":[202],"third-party":[203],"tools":[204],"(e.g.":[205],"BLAST).":[206],"2.":[207],"Two":[208],"RDPClassifier_16S_trainsetNo19_QiimeFormat.zip":[212],"retrain":[214],"included":[218],"Qiime2":[220],"package.":[221]},"counts_by_year":[],"updated_date":"2026-10-13T10:08:12.033832","created_date":"2024-04-03T00:00:00"}
