{"id":"https://openalex.org/W4393434441","doi":"https://doi.org/10.5281/zenodo.3951612","title":"Single-cell metabolic profiling (scMEP) of human cytotoxic T cells","display_name":"Single-cell metabolic profiling (scMEP) of human cytotoxic T cells","publication_year":2020,"publication_date":"2020-07-19","ids":{"openalex":"https://openalex.org/W4393434441","doi":"https://doi.org/10.5281/zenodo.3951612"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:3951613","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/3951613","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Biotechnology","raw_type":"dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/3951613","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029355580","display_name":"Felix J. Hartmann","orcid":"https://orcid.org/0000-0002-4174-2276","observed_orcids":["https://orcid.org/0000-0002-4174-2276"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hartmann, Felix J","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":"https://orcid.org/0000-0002-4174-2276","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031330247","display_name":"Dunja Mrdjen","orcid":"https://orcid.org/0000-0001-9269-2806","observed_orcids":["https://orcid.org/0000-0001-9269-2806"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mrdjen, Dunja","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":"https://orcid.org/0000-0001-9269-2806","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052611755","display_name":"Erin McCaffrey","orcid":"https://orcid.org/0000-0001-7241-1798","observed_orcids":["https://orcid.org/0000-0001-7241-1798"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"McCaffrey, Erin","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":"https://orcid.org/0000-0001-7241-1798","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077937026","display_name":"David Richard Glass","orcid":"https://orcid.org/0000-0001-9924-167X","observed_orcids":["https://orcid.org/0000-0001-9924-167X"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Glass, David R","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":"https://orcid.org/0000-0001-9924-167X","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062284140","display_name":"Noah F. Greenwald","orcid":"https://orcid.org/0000-0002-7836-4379","observed_orcids":["https://orcid.org/0000-0002-7836-4379"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Greenwald, Noah F","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":"https://orcid.org/0000-0002-7836-4379","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077707737","display_name":"Anusha Bharadwaj","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bharadwaj, Anusha","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049069528","display_name":"Zumana Khair","orcid":"https://orcid.org/0000-0003-3617-2472","observed_orcids":["https://orcid.org/0000-0003-3617-2472"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khair, Zumana","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013526569","display_name":"Sanne G. S. Verberk","orcid":"https://orcid.org/0000-0003-4509-4824","observed_orcids":["https://orcid.org/0000-0003-4509-4824"]},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I4387152927","display_name":"Cancer Center Amsterdam","ror":"https://ror.org/0286p1c86","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4387152927"]},{"id":"https://openalex.org/I4405257531","display_name":"Amsterdam Cardiovascular Sciences","ror":"https://ror.org/05c9qnd49","country_code":"NL","type":"funder","lineage":["https://openalex.org/I4405257531"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Verberk, Sanne GS","raw_affiliation_strings":["Department of Molecular Cell Biology and Immunology, Amsterdam Cardiovascular Sciences, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Cell Biology and Immunology, Amsterdam Cardiovascular Sciences, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam","institution_ids":["https://openalex.org/I4210151833","https://openalex.org/I4387152927","https://openalex.org/I4405257531","https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042800413","display_name":"Alex Baranski","orcid":"https://orcid.org/0000-0002-4069-4444","observed_orcids":["https://orcid.org/0000-0002-4069-4444"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baranski, Alex","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046490978","display_name":"Reema Baskar","orcid":"https://orcid.org/0000-0002-3872-0164","observed_orcids":["https://orcid.org/0000-0002-3872-0164"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baskar, Reema","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":"https://orcid.org/0000-0002-3872-0164","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Graf, William","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graf, William","raw_affiliation_strings":["Division of Biology and Bioengineering, California Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and Bioengineering, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045170248","display_name":"David Van Valen","orcid":"https://orcid.org/0000-0001-7534-7621","observed_orcids":["https://orcid.org/0000-0001-7534-7621"]},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Van Valen, David","raw_affiliation_strings":["Division of Biology and Bioengineering, California Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and Bioengineering, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053248467","display_name":"Jan Van den Bossche","orcid":"https://orcid.org/0000-0002-7852-2891","observed_orcids":["https://orcid.org/0000-0002-7852-2891"]},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I4387152927","display_name":"Cancer Center Amsterdam","ror":"https://ror.org/0286p1c86","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4387152927"]},{"id":"https://openalex.org/I4405257531","display_name":"Amsterdam Cardiovascular Sciences","ror":"https://ror.org/05c9qnd49","country_code":"NL","type":"funder","lineage":["https://openalex.org/I4405257531"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Van den Bossche, Jan","raw_affiliation_strings":["Department of Molecular Cell Biology and Immunology, Amsterdam Cardiovascular Sciences, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam"],"raw_orcid":"https://orcid.org/0000-0002-7852-2891","affiliations":[{"raw_affiliation_string":"Department of Molecular Cell Biology and Immunology, Amsterdam Cardiovascular Sciences, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam","institution_ids":["https://openalex.org/I4210151833","https://openalex.org/I4387152927","https://openalex.org/I4405257531","https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111080114","display_name":"Michael Angelo","orcid":"https://orcid.org/0000-0003-1531-5067","observed_orcids":["https://orcid.org/0000-0003-1531-5067"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Angelo, Michael","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045383208","display_name":"Sean C. Bendall","orcid":"https://orcid.org/0000-0003-1341-2453","observed_orcids":["https://orcid.org/0000-0003-1341-2453"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bendall, Sean C","raw_affiliation_strings":["Department of Pathology, School of Medicine, Stanford University"],"raw_orcid":"https://orcid.org/0000-0003-1341-2453","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Stanford University","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.7519999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.7519999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.13920000195503235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.01119999960064888,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cytotoxic-t-lymphocytes","display_name":"cytotoxic T lymphocytes","score":0.9240000247955322},{"id":"https://openalex.org/keywords/single-cell-metabolic-profiling","display_name":"single-cell metabolic profiling","score":0.8629999756813049},{"id":"https://openalex.org/keywords/t-cell-metabolism","display_name":"T cell metabolism","score":0.7760000228881836},{"id":"https://openalex.org/keywords/t-cell-activation","display_name":"T cell activation","score":0.878000020980835},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"colorectal cancer","score":0.9070000052452087},{"id":"https://openalex.org/keywords/colon","display_name":"colon","score":0.6259999871253967},{"id":"https://openalex.org/keywords/mass-cytometry","display_name":"mass cytometry","score":0.8479999899864197},{"id":"https://openalex.org/keywords/cell-segmentation","display_name":"cell segmentation","score":0.5630000233650208}],"concepts":[{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.7639812231063843},{"id":"https://openalex.org/C154317977","wikidata":"https://www.wikidata.org/wiki/Q376266","display_name":"Cytotoxic T cell","level":3,"score":0.7256113886833191},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5191042423248291},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.42369645833969116},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32080280780792236},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.276662677526474},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17365193367004395},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.11592239141464233},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:zenodo.org:3951613","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/3951613","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Biotechnology","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.3951612","doi":"https://doi.org/10.5281/zenodo.3951612","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3951612","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.3951613","doi":"https://doi.org/10.5281/zenodo.3951613","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3951613","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:3951613","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/3951613","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Biotechnology","raw_type":"dataset"},"sustainable_development_goals":[{"score":0.7246000170707703,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3081828282","https://openalex.org/W2999134278","https://openalex.org/W3089357381","https://openalex.org/W6906612343","https://openalex.org/W6911376343","https://openalex.org/W6912739592","https://openalex.org/W4399654826","https://openalex.org/W3097898016","https://openalex.org/W6911242143","https://openalex.org/W2944222137"],"abstract_inverted_index":{"Datasets":[0],"for":[1,23,98],"Hartmann":[2],"FJ":[3],"et":[4,92],"al.":[5,93],"(2020)":[6],"Single-cell":[7],"metabolic":[8,24,39],"profiling":[9],"of":[10,26,38,54],"human":[11,27,42],"cytotoxic":[12],"T":[13,33],"cells.":[14],"Nature":[15],"Biotechnology":[16],"Contains":[17],"single-cell":[18,52,115],"mass":[19],"cytometry":[20],"(CyTOF)":[21],"datasets":[22,62],"analysis":[25,37,77],"whole":[28],"blood":[29],"populations,":[30],"in":[31,41,90],"vitro":[32],"cell":[34,118],"activation":[35],"and":[36,50,57,123,126],"states":[40],"tissues":[43],"as":[44,46,88],"well":[45],"MIBI-TOF":[47,82,99,113],"multiplexed":[48],"images":[49,83],"segmented":[51],"data":[53,76,100,116],"colorectal":[55],"carcinoma":[56],"healthy":[58],"colon.":[59],"All":[60],"CyTOF":[61],"have":[63,84],"been":[64],"manually":[65,128],"gated":[66],"on":[67],"single,":[68],"live":[69],"cells":[70],"to":[71,107],"enable":[72],"direct":[73],"import":[74],"into":[75],"software":[78],"(e.g.":[79],"R":[80],"environment)":[81],"undergone":[85],"noise":[86],"removal":[87],"described":[89],"Keren":[91],"(2018)":[94],"Cell":[95],"Segmentation":[96],"masks":[97],"contain":[101],"large":[102],"non-cellular":[103],"regions":[104],"that":[105],"need":[106],"be":[108],"removed":[109],"during":[110],"downstream":[111],"processing":[112],"derived":[114],"is":[117],"size":[119],"normalized,":[120],"arcsinh":[121],"transformed":[122],"percentile":[124],"normalized":[125],"contains":[127],"annotated":[129],"FlowSOM":[130],"clustering":[131],"results":[132]},"counts_by_year":[],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2024-04-03T00:00:00"}