{"id":"https://openalex.org/W4392581145","doi":"https://doi.org/10.1038/s41598-024-56162-7","title":"Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events","display_name":"Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events","publication_year":2024,"publication_date":"2024-03-08","ids":{"openalex":"https://openalex.org/W4392581145","doi":"https://doi.org/10.1038/s41598-024-56162-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/38459123","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10923895"},"language":"en","primary_location":{"id":"doi:10.1038/s41598-024-56162-7","doi":"https://doi.org/10.1038/s41598-024-56162-7","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41598-024-56162-7","pdf_url":"https://www.nature.com/articles/s41598-024-56162-7.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41598-024-56162-7.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114075298","display_name":"Elisabeth Esser","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Elisabeth Esser","raw_affiliation_strings":["Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany","School of Computation, Information and Technology, Technical University of Munich, Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I62916508"]},{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University of Munich, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050896294","display_name":"Eva Christina Schulte","orcid":"https://orcid.org/0000-0003-3105-5672","observed_orcids":["https://orcid.org/0000-0003-3105-5672"]},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I2799391451","display_name":"University Hospital Bonn","ror":"https://ror.org/01xnwqx93","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799391451"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I3018771216","display_name":"LMU Klinikum","ror":"https://ror.org/02jet3w32","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I3018771216","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I4405258074","display_name":"Institut f\u00fcr Psychiatrische Ph\u00e4nomik und Genomik","ror":"https://ror.org/0029hqx58","country_code":"DE","type":"facility","lineage":["https://openalex.org/I3018771216","https://openalex.org/I4405258074","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Eva C. Schulte","raw_affiliation_strings":["Department of Psychiatry, University Hospital, LMU Munich, Munich, Germany","Department of Psychiatry, University Hospital, Medical Faculty, University of Bonn, Bonn, Germany","Institute of Human Genetics, University Hospital, Medical Faculty, University of Bonn, Bonn, Germany","Institute of Psychiatric Phenomics and Genomics, University Hospital, LMU Munich, Munich, Germany","Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, University Hospital, LMU Munich, Munich, Germany","institution_ids":["https://openalex.org/I3018771216","https://openalex.org/I8204097"]},{"raw_affiliation_string":"Department of Psychiatry, University Hospital, Medical Faculty, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]},{"raw_affiliation_string":"Institute of Human Genetics, University Hospital, Medical Faculty, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]},{"raw_affiliation_string":"Institute of Psychiatric Phenomics and Genomics, University Hospital, LMU Munich, Munich, Germany","institution_ids":["https://openalex.org/I4405258074","https://openalex.org/I8204097"]},{"raw_affiliation_string":"Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010697303","display_name":"Alexander Graf","orcid":"https://orcid.org/0000-0003-4435-6861","observed_orcids":["https://orcid.org/0000-0003-4435-6861"]},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Graf","raw_affiliation_strings":["Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008086132","display_name":"Alexander Karollus","orcid":"https://orcid.org/0000-0001-7570-7877","observed_orcids":["https://orcid.org/0000-0001-7570-7877"]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Karollus","raw_affiliation_strings":["School of Computation, Information and Technology, Technical University of Munich, Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University of Munich, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086834400","display_name":"Nicholas H. Smith","orcid":"https://orcid.org/0009-0008-0026-0757","observed_orcids":["https://orcid.org/0009-0008-0026-0757"]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nicholas H. Smith","raw_affiliation_strings":["School of Computation, Information and Technology, Technical University of Munich, Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University of Munich, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091265468","display_name":"Thomas Michler","orcid":"https://orcid.org/0000-0002-4174-3316","observed_orcids":["https://orcid.org/0000-0002-4174-3316"]},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4405261557","display_name":"Institut f\u00fcr Laboratoriumsmedizin","ror":"https://ror.org/05g1y0660","country_code":"DE","type":"education","lineage":["https://openalex.org/I3018771216","https://openalex.org/I4405261557","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Michler","raw_affiliation_strings":["Institute of Laboratory Medicine, University Hospital, LMU Munich, Munich, Germany","Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Laboratory Medicine, University Hospital, LMU Munich, Munich, Germany","institution_ids":["https://openalex.org/I4405261557","https://openalex.org/I8204097"]},{"raw_affiliation_string":"Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Stefan Dvoretskii","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Dvoretskii","raw_affiliation_strings":["School of Computation, Information and Technology, Technical University of Munich, Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University of Munich, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034687804","display_name":"Angel Angelov","orcid":"https://orcid.org/0000-0002-9228-0817","observed_orcids":["https://orcid.org/0000-0002-9228-0817"]},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Angel Angelov","raw_affiliation_strings":["NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033552221","display_name":"Michael Sonnabend","orcid":"https://orcid.org/0000-0001-5373-3169","observed_orcids":["https://orcid.org/0000-0001-5373-3169"]},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Sonnabend","raw_affiliation_strings":["NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033018668","display_name":"Silke Peter","orcid":"https://orcid.org/0000-0002-1355-3953","observed_orcids":["https://orcid.org/0000-0002-1355-3953"]},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Silke Peter","raw_affiliation_strings":["NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040785973","display_name":"Christina Engesser","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina Engesser","raw_affiliation_strings":["NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NGS Competence Center, University of T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053623811","display_name":"Aleksandar Radoni\u0107","orcid":"https://orcid.org/0000-0001-6200-9607","observed_orcids":["https://orcid.org/0000-0001-6200-9607"]},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Aleksandar Radonic","raw_affiliation_strings":["Method development, Research Infrastructure & IT (MFI), Robert-Koch Institute (RKI), Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Method development, Research Infrastructure & IT (MFI), Robert-Koch Institute (RKI), Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039915555","display_name":"Andrea Th\u00fcrmer","orcid":"https://orcid.org/0000-0001-7397-6504","observed_orcids":["https://orcid.org/0000-0001-7397-6504","https://orcid.org/0000-0002-4880-7749"]},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andrea Th\u00fcrmer","raw_affiliation_strings":["Method development, Research Infrastructure & IT (MFI), Robert-Koch Institute (RKI), Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Method development, Research Infrastructure & IT (MFI), Robert-Koch Institute (RKI), Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089767325","display_name":"Max von Kleist","orcid":"https://orcid.org/0000-0001-6587-6394","observed_orcids":["https://orcid.org/0000-0001-6587-6394"]},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Max von Kleist","raw_affiliation_strings":["Department of Mathematics and Computer Science, Freie Universit\u00e4t (FU) Berlin, Berlin, Germany","Project Groups, Robert-Koch Institute (RKI), Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Freie Universit\u00e4t (FU) Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Project Groups, Robert-Koch Institute (RKI), Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036035311","display_name":"Friedemann E. Gebhardt","orcid":"https://orcid.org/0000-0001-7948-4906","observed_orcids":["https://orcid.org/0000-0001-7948-4906"]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Friedemann Gebhardt","raw_affiliation_strings":["Institute for Medical Microbiology, Immunology and Hygiene, School of Medicine, Technical University of Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Medical Microbiology, Immunology and Hygiene, School of Medicine, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041612571","display_name":"Clarissa Prazeres da Costa","orcid":"https://orcid.org/0000-0001-7996-4838","observed_orcids":["https://orcid.org/0000-0001-7996-4838"]},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Clarissa Prazeres da Costa","raw_affiliation_strings":["German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","Institute for Medical Microbiology, Immunology and Hygiene, School of Medicine, Technical University of Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Institute for Medical Microbiology, Immunology and Hygiene, School of Medicine, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062895290","display_name":"Dirk Hans Busch","orcid":"https://orcid.org/0000-0001-8713-093X","observed_orcids":["https://orcid.org/0000-0001-8713-093X","https://orcid.org/0000-0002-0685-4483","https://orcid.org/0000-0001-9323-9472"]},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dirk H. Busch","raw_affiliation_strings":["German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","Institute for Medical Microbiology, Immunology and Hygiene, School of Medicine, Technical University of Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Institute for Medical Microbiology, Immunology and Hygiene, School of Medicine, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074085845","display_name":"Maximilian Muenchhoff","orcid":"https://orcid.org/0000-0001-7016-0470","observed_orcids":["https://orcid.org/0000-0001-7016-0470"]},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4405261663","display_name":"Max-von-Pettenkofer-Institut f\u00fcr Hygiene und Medizinische Mikrobiologie","ror":"https://ror.org/05na4hm84","country_code":"DE","type":"education","lineage":["https://openalex.org/I4405261663","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maximilian Muenchhoff","raw_affiliation_strings":["German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","Max Von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, Faculty of Medicine, LMU Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Max Von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, Faculty of Medicine, LMU Munich, Munich, Germany","institution_ids":["https://openalex.org/I4405261663","https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069430515","display_name":"Helmut Blum","orcid":"https://orcid.org/0000-0002-3994-2332","observed_orcids":["https://orcid.org/0000-0002-3994-2332"]},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helmut Blum","raw_affiliation_strings":["Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080275082","display_name":"Oliver Till Keppler","orcid":"https://orcid.org/0000-0002-1384-8946","observed_orcids":["https://orcid.org/0000-0002-1384-8946"]},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4405261663","display_name":"Max-von-Pettenkofer-Institut f\u00fcr Hygiene und Medizinische Mikrobiologie","ror":"https://ror.org/05na4hm84","country_code":"DE","type":"education","lineage":["https://openalex.org/I4405261663","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver T. Keppler","raw_affiliation_strings":["German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","Max Von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, Faculty of Medicine, LMU Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Max Von Pettenkofer Institute and Gene Center, Virology, National Reference Center for Retroviruses, Faculty of Medicine, LMU Munich, Munich, Germany","institution_ids":["https://openalex.org/I4405261663","https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000244333","display_name":"Julien Gagneur","orcid":"https://orcid.org/0000-0002-8924-8365","observed_orcids":["https://orcid.org/0000-0002-8924-8365"]},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4405260296","display_name":"Institut f\u00fcr Humangenetik","ror":"https://ror.org/03hxyy717","country_code":"DE","type":"facility","lineage":["https://openalex.org/I3018771216","https://openalex.org/I4405260296","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Julien Gagneur","raw_affiliation_strings":["Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany. gagneur@in.tum.de","Institute of Human Genetics, School of Medicine & Health, Technical University of Munich, Munich, Germany. gagneur@in.tum.de","School of Computation, Information and Technology, Technical University of Munich, Garching, Germany. gagneur@in.tum.de","Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany","Institute of Human Genetics, School of Medicine & Health, Technical University of Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany. gagneur@in.tum.de","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Institute of Human Genetics, School of Medicine & Health, Technical University of Munich, Munich, Germany. gagneur@in.tum.de","institution_ids":["https://openalex.org/I4405260296","https://openalex.org/I62916508"]},{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University of Munich, Garching, Germany. gagneur@in.tum.de","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Institute of Human Genetics, School of Medicine & Health, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I4405260296","https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091595561","display_name":"Ulrike Protzer","orcid":"https://orcid.org/0000-0002-9421-1911","observed_orcids":["https://orcid.org/0000-0002-9421-1911"]},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ulrike Protzer","raw_affiliation_strings":["German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany. protzer@tum.de","Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany. protzer@tum.de","German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany. protzer@tum.de","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany. protzer@tum.de","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I62916508"]},{"raw_affiliation_string":"German Center for Infection Research (DZIF), Munich Partner Site, Munich, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Institute of Virology, School of Medicine & Health, Technical University of Munich/Helmholtz Munich, Munich, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5000244333","https://openalex.org/A5091595561"],"corresponding_institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210115305","https://openalex.org/I4405260296","https://openalex.org/I62916508"],"apc_list":{"value":2590,"currency":"USD","value_usd":2590},"apc_paid":{"value":2590,"currency":"USD","value_usd":2590},"fwci":1.2016,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.75128228,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":96},"biblio":{"volume":"14","issue":"1","first_page":"5768","last_page":"5768"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.8788999915122986,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.8788999915122986,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.03229999914765358,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.030899999663233757,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sars-cov-2","display_name":"SARS-CoV-2","score":0.9990000128746033},{"id":"https://openalex.org/keywords/nosocomial-transmission","display_name":"nosocomial transmission","score":0.9419999718666077},{"id":"https://openalex.org/keywords/in-hospital-transmission","display_name":"in-hospital transmission","score":0.843999981880188},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.7080000042915344},{"id":"https://openalex.org/keywords/transmission-clusters","display_name":"transmission clusters","score":0.7760000228881836},{"id":"https://openalex.org/keywords/contact-tracing","display_name":"contact tracing","score":0.8579999804496765},{"id":"https://openalex.org/keywords/hospital-staff","display_name":"hospital staff","score":0.5870000123977661},{"id":"https://openalex.org/keywords/hospitalized-patients","display_name":"hospitalized patients","score":0.503000020980835},{"id":"https://openalex.org/keywords/cross-infection","display_name":"cross-infection","score":0.7789999842643738},{"id":"https://openalex.org/keywords/hospital-infection-control","display_name":"hospital infection control","score":0.41200000047683716}],"concepts":[{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.8193316459655762},{"id":"https://openalex.org/C113162765","wikidata":"https://www.wikidata.org/wiki/Q1128437","display_name":"Contact tracing","level":5,"score":0.7486439943313599},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7436695098876953},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.5969791412353516},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.5687168836593628},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4744604527950287},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.4465550482273102},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.42294636368751526},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4193885326385498},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4129164218902588},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.3648931384086609},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33874693512916565},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.32982438802719116},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.31788313388824463},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.2873258888721466},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.1442842185497284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13600200414657593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10730785131454468},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003428","descriptor_name":"Cross Infection","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003428","descriptor_name":"Cross Infection","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D006785","descriptor_name":"Hospitals, University","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1038/s41598-024-56162-7","doi":"https://doi.org/10.1038/s41598-024-56162-7","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41598-024-56162-7","pdf_url":"https://www.nature.com/articles/s41598-024-56162-7.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},{"id":"doi:10.21203/rs.3.rs-3252053/v1","doi":"https://doi.org/10.21203/rs.3.rs-3252053/v1","is_oa":true,"landing_page_url":"http://dx.doi.org/10.21203/rs.3.rs-3252053/v1","pdf_url":"https://www.researchsquare.com/article/rs-3252053/latest.pdf","source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:10923895","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10923895","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10923895/pdf/41598_2024_Article_56162.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sci Rep","raw_type":"Text"},{"id":"pmid:38459123","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38459123","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific reports","raw_type":"Journal Article"},{"id":"pmh:oai:edoc.rki.de:176904/13549","doi":null,"is_oa":true,"landing_page_url":"http://edoc.rki.de/176904/13549","pdf_url":"https://edoc.rki.de/bitstream/176904/13549/1/s41598-024-56162-7.pdf","source":{"id":"https://openalex.org/S4306400512","display_name":"Publication server of the Robert Koch Institute (Robert Kock Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I24359323","host_organization_name":"Robert Koch Institute","host_organization_lineage":["https://openalex.org/I24359323"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:d2e44a1b69c64e72a9c65953950f2384","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/d2e44a1b69c64e72a9c65953950f2384","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scientific Reports, Vol 14, Iss 1, Pp 1-11 (2024)","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1770086","doi":null,"is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1770086","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1792852","doi":null,"is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1792852","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41598-024-56162-7","doi":"https://doi.org/10.1038/s41598-024-56162-7","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41598-024-56162-7","pdf_url":"https://www.nature.com/articles/s41598-024-56162-7.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.98580002784729}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[{"id":"https://openalex.org/G210627469","display_name":null,"funder_award_id":"SCHU2419/2-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7483376350","display_name":null,"funder_award_id":"01KI2016","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392581145.pdf","grobid_xml":"https://content.openalex.org/works/W4392581145.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1596062789","https://openalex.org/W2013223495","https://openalex.org/W2095680943","https://openalex.org/W2952045272","https://openalex.org/W3013893137","https://openalex.org/W3015281372","https://openalex.org/W3029878358","https://openalex.org/W3034071161","https://openalex.org/W3043177992","https://openalex.org/W3045863177","https://openalex.org/W3087225846","https://openalex.org/W3135203677","https://openalex.org/W3168623228","https://openalex.org/W3191033812","https://openalex.org/W3208802660","https://openalex.org/W4200137031","https://openalex.org/W4220823144","https://openalex.org/W4225526164","https://openalex.org/W4283122891","https://openalex.org/W4376132718","https://openalex.org/W6600291067"],"related_works":["https://openalex.org/W4283122891","https://openalex.org/W3151402474","https://openalex.org/W3195683189","https://openalex.org/W3192094462","https://openalex.org/W3197925787","https://openalex.org/W3110592577","https://openalex.org/W4376132718","https://openalex.org/W3134578449","https://openalex.org/W4294050885","https://openalex.org/W3175889053"],"abstract_inverted_index":{"The":[0,150],"SARS-CoV-2":[1,38,41,203],"pandemic":[2],"has":[3],"highlighted":[4],"the":[5,69,103,111,170,189],"need":[6,13],"to":[7,16,35,91,116,134,158,219],"better":[8],"define":[9],"in-hospital":[10,221],"transmissions,":[11],"a":[12,59,236],"that":[14],"extends":[15],"all":[17],"other":[18,160,167,228],"common":[19],"infectious":[20],"diseases":[21],"encountered":[22],"in":[23,62,110,169,192,225,241],"clinical":[24],"settings.":[25],"To":[26],"evaluate":[27],"how":[28],"whole":[29,204],"viral":[30,42,86,126,151,232],"genome":[31,87,205,233],"sequencing":[32,88,234],"can":[33,207],"contribute":[34],"deciphering":[36],"nosocomial":[37,177],"transmission":[39,82,138,210,238],"926":[40],"genomes":[43,127,152,163],"from":[44,85,94,132,181],"622":[45],"staff":[46],"members":[47],"and":[48,55,65,77],"patients":[49,183],"were":[50,89,153],"collected":[51,101,164],"between":[52],"February":[53],"2020":[54],"January":[56],"2021":[57],"at":[58,102,106,166],"university":[60,108],"hospital":[61,75,109,190],"Munich,":[63],"Germany,":[64],"analysed":[66],"along":[67],"with":[68,143,227],"place":[70],"of":[71,74,124,194,197,202],"work,":[72],"duration":[73],"stay,":[76],"ward":[78],"transfers.":[79],"Bioinformatically":[80],"defined":[81],"clusters":[83,130,139],"inferred":[84,93],"compared":[90],"those":[92,144],"interview-based":[95,215],"contact":[96,147,216],"tracing.":[97],"An":[98],"additional":[99],"dataset":[100],"same":[104,112,171],"time":[105],"another":[107],"city":[113,172],"was":[114],"used":[115],"account":[117],"for":[118,231],"multiple":[119],"independent":[120],"introductions.":[121],"Clustering":[122,200],"analysis":[123,201],"619":[125],"generated":[128],"19":[129],"ranging":[131],"3":[133],"31":[135],"individuals.":[136],"Sequencing-based":[137],"showed":[140],"little":[141],"overlap":[142],"based":[145],"on":[146],"tracing":[148],"data.":[149],"significantly":[154],"more":[155],"closely":[156],"related":[157],"each":[159],"than":[161],"comparable":[162],"simultaneously":[165],"hospitals":[168],"(n":[173],"=":[174],"829),":[175],"suggesting":[176],"transmission.":[178],"Longitudinal":[179],"sampling":[180],"individual":[182],"suggested":[184],"possible":[185],"cross-infection":[186],"events":[187,211],"during":[188],"stay":[191],"19.2%":[193],"individuals":[195],"(14":[196],"73":[198],"individuals).":[199],"sequences":[206],"reveal":[208],"cryptic":[209],"missed":[212],"by":[213],"classical,":[214],"tracing,":[217],"helping":[218],"decipher":[220],"transmissions.":[222],"These":[223],"results,":[224],"line":[226],"studies,":[229],"advocate":[230],"as":[235],"pathogen":[237],"surveillance":[239],"tool":[240],"hospitals.":[242]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2024-03-09T00:00:00"}
