{"id":"https://openalex.org/W4389388992","doi":"https://doi.org/10.3390/ijms242417184","title":"Comparison of Nanopore and Synthesis-Based Next-Generation Sequencing Platforms for SARS-CoV-2 Variant Monitoring in Wastewater","display_name":"Comparison of Nanopore and Synthesis-Based Next-Generation Sequencing Platforms for SARS-CoV-2 Variant Monitoring in Wastewater","publication_year":2023,"publication_date":"2023-12-06","ids":{"openalex":"https://openalex.org/W4389388992","doi":"https://doi.org/10.3390/ijms242417184","pmid":"https://pubmed.ncbi.nlm.nih.gov/38139015","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10743471"},"language":"en","primary_location":{"id":"doi:10.3390/ijms242417184","doi":"https://doi.org/10.3390/ijms242417184","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ijms242417184","pdf_url":"https://www.mdpi.com/1422-0067/24/24/17184/pdf?version=1701855485","source":{"id":"https://openalex.org/S10623703","display_name":"International Journal of Molecular Sciences","issn_l":"1422-0067","issn":["1422-0067","1661-6596"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","medline","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Molecular Sciences","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1422-0067/24/24/17184/pdf?version=1701855485","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058278155","display_name":"David Garc\u00eda-Pedemonte","orcid":"https://orcid.org/0000-0001-8375-8797","observed_orcids":["https://orcid.org/0000-0001-8375-8797"]},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"David Garcia-Pedemonte","raw_affiliation_strings":["Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0001-8375-8797","affiliations":[{"raw_affiliation_string":"Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016951000","display_name":"Albert Carcereny","orcid":"https://orcid.org/0000-0002-9615-7576","observed_orcids":["https://orcid.org/0000-0002-9615-7576"]},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Albert Carcereny","raw_affiliation_strings":["Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-9615-7576","affiliations":[{"raw_affiliation_string":"Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087236325","display_name":"Josep Gregori","orcid":"https://orcid.org/0000-0002-4253-8015","observed_orcids":["https://orcid.org/0000-0002-4253-8015"]},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210127641","display_name":"Vall d'Hebron Hospital Universitari","ror":"https://ror.org/03ba28x55","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I157913058","https://openalex.org/I4210127641","https://openalex.org/I4210153292"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josep Gregori","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, 28029 Madrid, Spain","Liver Unit, Liver Diseases\u2014Viral Hepatitis, Vall d\u2019Hebron Institut de Recerca (VHIR), Vall d\u2019Hebron Hospital Campus, 08035 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-4253-8015","affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210132431"]},{"raw_affiliation_string":"Liver Unit, Liver Diseases\u2014Viral Hepatitis, Vall d\u2019Hebron Institut de Recerca (VHIR), Vall d\u2019Hebron Hospital Campus, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I4210127641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054578489","display_name":"Josep Quer","orcid":"https://orcid.org/0000-0003-0014-084X","observed_orcids":["https://orcid.org/0000-0003-0014-084X"]},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210127641","display_name":"Vall d'Hebron Hospital Universitari","ror":"https://ror.org/03ba28x55","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I157913058","https://openalex.org/I4210127641","https://openalex.org/I4210153292"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josep Quer","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, 28029 Madrid, Spain","Liver Unit, Liver Diseases\u2014Viral Hepatitis, Vall d\u2019Hebron Institut de Recerca (VHIR), Vall d\u2019Hebron Hospital Campus, 08035 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0003-0014-084X","affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210132431"]},{"raw_affiliation_string":"Liver Unit, Liver Diseases\u2014Viral Hepatitis, Vall d\u2019Hebron Institut de Recerca (VHIR), Vall d\u2019Hebron Hospital Campus, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I4210127641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022231968","display_name":"Damir Garc\u00eda\u2010Cehic","orcid":"https://orcid.org/0000-0002-0009-038X","observed_orcids":["https://orcid.org/0000-0002-0009-038X"]},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210127641","display_name":"Vall d'Hebron Hospital Universitari","ror":"https://ror.org/03ba28x55","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I157913058","https://openalex.org/I4210127641","https://openalex.org/I4210153292"]},{"id":"https://openalex.org/I4210132431","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas","ror":"https://ror.org/03cn6tr16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210132431"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Damir Garcia-Cehic","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, 28029 Madrid, Spain","Liver Unit, Liver Diseases\u2014Viral Hepatitis, Vall d\u2019Hebron Institut de Recerca (VHIR), Vall d\u2019Hebron Hospital Campus, 08035 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0009-038X","affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Hep\u00e1ticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, 28029 Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210132431"]},{"raw_affiliation_string":"Liver Unit, Liver Diseases\u2014Viral Hepatitis, Vall d\u2019Hebron Institut de Recerca (VHIR), Vall d\u2019Hebron Hospital Campus, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407","https://openalex.org/I4210127641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043328654","display_name":"Laura Guerrero\u2010Latorre","orcid":"https://orcid.org/0000-0003-1978-9067","observed_orcids":["https://orcid.org/0000-0003-1978-9067"]},"institutions":[{"id":"https://openalex.org/I2799562678","display_name":"Catalan Institute for Water Research","ror":"https://ror.org/04zfaj906","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799562678","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Laura Guerrero","raw_affiliation_strings":["Catalan Institute for Water Research (ICRA), 17003 Girona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Catalan Institute for Water Research (ICRA), 17003 Girona, Spain","institution_ids":["https://openalex.org/I2799562678"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073519245","display_name":"Adri\u00e0 Cereto\u2010Massagu\u00e9","orcid":"https://orcid.org/0000-0002-9319-6377","observed_orcids":["https://orcid.org/0000-0002-9319-6377"]},"institutions":[{"id":"https://openalex.org/I4210153714","display_name":"Centre for Omic Sciences","ror":"https://ror.org/04bcdzr74","country_code":"ES","type":"education","lineage":["https://openalex.org/I4210153714"]},{"id":"https://openalex.org/I55952717","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Adri\u00e0 Ceret\u00f3-Massagu\u00e9","raw_affiliation_strings":["Centre for Omic Sciences (COS), Joint Unit Universitat Rovira i Virgili-EURECAT, Unique Scientific and Technical Infrastructures (ICTS), 43204 Reus, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Omic Sciences (COS), Joint Unit Universitat Rovira i Virgili-EURECAT, Unique Scientific and Technical Infrastructures (ICTS), 43204 Reus, Spain","institution_ids":["https://openalex.org/I4210153714","https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103548890","display_name":"Islem Faraj Abid","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I28022161","display_name":"King Saud University","ror":"https://ror.org/02f81g417","country_code":"SA","type":"education","lineage":["https://openalex.org/I28022161"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES","SA"],"is_corresponding":false,"raw_author_name":"Islem Abid","raw_affiliation_strings":["Center of Excellence in Biotechnology Research, College of Applied Science, King Saud University, Riyadh 11495, Saudi Arabia","Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Excellence in Biotechnology Research, College of Applied Science, King Saud University, Riyadh 11495, Saudi Arabia","institution_ids":["https://openalex.org/I28022161"]},{"raw_affiliation_string":"Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086259786","display_name":"Albert Bosch","orcid":"https://orcid.org/0000-0002-8111-9059","observed_orcids":["https://orcid.org/0000-0002-8111-9059"]},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Albert Bosch","raw_affiliation_strings":["Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-8111-9059","affiliations":[{"raw_affiliation_string":"Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090030904","display_name":"Mar\u00eda Isabel Costafreda","orcid":"https://orcid.org/0000-0002-3114-3034","observed_orcids":["https://orcid.org/0000-0002-3114-3034"]},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maria Isabel Costafreda","raw_affiliation_strings":["Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-3114-3034","affiliations":[{"raw_affiliation_string":"Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053631838","display_name":"Rosa M Pint\u00f3","orcid":"https://orcid.org/0000-0003-1382-6648","observed_orcids":["https://orcid.org/0000-0003-1382-6648"]},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Rosa M. Pint\u00f3","raw_affiliation_strings":["Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074521300","display_name":"Susana Guix","orcid":"https://orcid.org/0000-0002-1588-3198","observed_orcids":["https://orcid.org/0000-0002-1588-3198"]},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Susana Guix","raw_affiliation_strings":["Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-1588-3198","affiliations":[{"raw_affiliation_string":"Enteric Virus Laboratory, Institute of Nutrition and Food Safety (INSA), University of Barcelona, 08921 Santa Coloma de Gramenet, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Enteric Virus Laboratory, Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, School of Biology, University of Barcelona, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5053631838","https://openalex.org/A5074521300"],"corresponding_institution_ids":["https://openalex.org/I71999127"],"apc_list":{"value":2500,"currency":"CHF","value_usd":2780},"apc_paid":{"value":2500,"currency":"CHF","value_usd":2780},"fwci":3.2741,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.92327376,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"24","issue":"24","first_page":"17184","last_page":"17184"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.9067000150680542,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.9067000150680542,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07900000363588333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.00559999980032444,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sars-cov-2","display_name":"SARS-CoV-2","score":0.9639999866485596},{"id":"https://openalex.org/keywords/wastewater-surveillance","display_name":"wastewater surveillance","score":0.597000002861023},{"id":"https://openalex.org/keywords/oxford-nanopore-minion","display_name":"Oxford Nanopore MinION","score":0.9409999847412109},{"id":"https://openalex.org/keywords/illumina-miseq","display_name":"Illumina MiSeq","score":0.9900000095367432},{"id":"https://openalex.org/keywords/sequencing-technology-comparison","display_name":"sequencing platform comparison","score":0.7670000195503235},{"id":"https://openalex.org/keywords/variant-calling","display_name":"variant calling","score":0.7699999809265137},{"id":"https://openalex.org/keywords/lofreq","display_name":"LoFreq","score":0.7350000143051147},{"id":"https://openalex.org/keywords/ivar","display_name":"Ivar","score":0.9480000138282776},{"id":"https://openalex.org/keywords/freyja","display_name":"Freyja","score":0.9710000157356262},{"id":"https://openalex.org/keywords/sequencing-error-rate","display_name":"sequencing error rate","score":0.7639999985694885},{"id":"https://openalex.org/keywords/wastewater-based-epidemiology","display_name":"wastewater-based epidemiology","score":0.5529999732971191}],"concepts":[{"id":"https://openalex.org/C2779927696","wikidata":"https://www.wikidata.org/wiki/Q6865654","display_name":"Minion","level":5,"score":0.9930428266525269},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.9158191680908203},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5613300800323486},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5042129755020142},{"id":"https://openalex.org/C176553487","wikidata":"https://www.wikidata.org/wiki/Q7855819","display_name":"Turnaround time","level":2,"score":0.46203094720840454},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4310012757778168},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4288364350795746},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3233383893966675},{"id":"https://openalex.org/C79403827","wikidata":"https://www.wikidata.org/wiki/Q3988","display_name":"Real-time computing","level":1,"score":0.3201749920845032},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22009465098381042},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13914749026298523},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13769319653511047},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062065","descriptor_name":"Wastewater","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.3390/ijms242417184","doi":"https://doi.org/10.3390/ijms242417184","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ijms242417184","pdf_url":"https://www.mdpi.com/1422-0067/24/24/17184/pdf?version=1701855485","source":{"id":"https://openalex.org/S10623703","display_name":"International Journal of Molecular Sciences","issn_l":"1422-0067","issn":["1422-0067","1661-6596"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","medline","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Molecular Sciences","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10743471","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10743471","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10743471/pdf/ijms-24-17184.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Int J Mol Sci","raw_type":"Text"},{"id":"pmid:38139015","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38139015","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of molecular sciences","raw_type":"Journal Article"},{"id":"pmh:oai:urv.cat:imarina:9333911","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11797/imarina9333911","pdf_url":"https://repositori.urv.cat/repositori/getDocument/imarina%3A9333911?ds=DocumentPrincipal&mime=application/pdf","source":{"id":"https://openalex.org/S7407055111","display_name":"Rovira & Virgili repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal Of Molecular Sciences. 24 (24):","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:diposit.ub.edu:2445/207029","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/2445/207029","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Articles publicats en revistes (Gen\u00e8tica, Microbiologia i Estad\u00edstica)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3390/ijms242417184","doi":"https://doi.org/10.3390/ijms242417184","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ijms242417184","pdf_url":"https://www.mdpi.com/1422-0067/24/24/17184/pdf?version=1701855485","source":{"id":"https://openalex.org/S10623703","display_name":"International Journal of Molecular Sciences","issn_l":"1422-0067","issn":["1422-0067","1661-6596"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","medline","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Molecular Sciences","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5683000087738037}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1051260369","display_name":null,"funder_award_id":"PI22/00258","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G1342210719","display_name":"Estudio de quasispecies por metagen\u00f3mica en neuropat\u00edas asociadas a virus por secuenciaci\u00f3n masiva de nueva generaci\u00f3n.","funder_award_id":"PI22/00258","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G1798198898","display_name":null,"funder_award_id":"PCI2021-121928","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G1921902910","display_name":null,"funder_award_id":"GA n\u00aa869178","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2230977247","display_name":null,"funder_award_id":"PI22/00258","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"},{"id":"https://openalex.org/G5598274478","display_name":null,"funder_award_id":"PI22/00258","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5738219820","display_name":null,"funder_award_id":"PCI2021-121928","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"},{"id":"https://openalex.org/G5900562899","display_name":null,"funder_award_id":"2020PANDE00055","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6707246312","display_name":null,"funder_award_id":"2020PANDE00055","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G6768187926","display_name":null,"funder_award_id":"GA n\u00aa869178","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"},{"id":"https://openalex.org/G8962850007","display_name":null,"funder_award_id":"2020PANDE00055","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320853","display_name":"Public Health Agency","ror":"https://ror.org/03ek62e72"},{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":null},{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":"https://ror.org/003x0zc53"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389388992.pdf","grobid_xml":"https://content.openalex.org/works/W4389388992.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1964807436","https://openalex.org/W2022316530","https://openalex.org/W2036897871","https://openalex.org/W2157107905","https://openalex.org/W2567652848","https://openalex.org/W2590415818","https://openalex.org/W2789843538","https://openalex.org/W2951278111","https://openalex.org/W2952946229","https://openalex.org/W2987267640","https://openalex.org/W3003217347","https://openalex.org/W3025837085","https://openalex.org/W3036626685","https://openalex.org/W3047311650","https://openalex.org/W3082589942","https://openalex.org/W3091097417","https://openalex.org/W3112249938","https://openalex.org/W3160568774","https://openalex.org/W3194108352","https://openalex.org/W3195042195","https://openalex.org/W3202060848","https://openalex.org/W3204104449","https://openalex.org/W3213101281","https://openalex.org/W4206981220","https://openalex.org/W4223460124","https://openalex.org/W4224015138","https://openalex.org/W4226157748","https://openalex.org/W4226175767","https://openalex.org/W4231539689","https://openalex.org/W4281653060","https://openalex.org/W4284696817","https://openalex.org/W4285035227","https://openalex.org/W4288810566","https://openalex.org/W4296260841","https://openalex.org/W4302293063","https://openalex.org/W4311364345","https://openalex.org/W4377086631","https://openalex.org/W4378952994","https://openalex.org/W4393525553"],"related_works":["https://openalex.org/W4402632131","https://openalex.org/W4402751636","https://openalex.org/W4391916008","https://openalex.org/W4394852763","https://openalex.org/W4412392268","https://openalex.org/W4313238523","https://openalex.org/W3112249938","https://openalex.org/W4362602083","https://openalex.org/W4413353271","https://openalex.org/W4226124637"],"abstract_inverted_index":{"Shortly":[0],"after":[1],"the":[2,5,16,19,22,32,53,66,86,92,131,139,165,187,211,230],"beginning":[3],"of":[4,18,27,49,52,68,120,167,175,194,201],"SARS-CoV-2":[6,215],"pandemic,":[7],"many":[8],"countries":[9],"implemented":[10],"sewage":[11],"sentinel":[12],"systems":[13],"to":[14,38,84,105,129],"monitor":[15,39],"circulation":[17],"virus":[20],"in":[21,192],"population.":[23],"A":[24],"fundamental":[25],"part":[26],"these":[28],"surveillance":[29],"programs":[30],"is":[31],"variant":[33,110,122,132,216],"tracking":[34],"through":[35],"sequencing":[36,55,97],"approaches":[37,128],"and":[40,59,71,102,107,125,127,153,199,220],"identify":[41],"new":[42],"variants":[43],"or":[44],"mutations":[45],"that":[46],"may":[47,89,149,224],"be":[48,150,208],"importance.":[50],"Two":[51],"main":[54],"platforms":[56],"are":[57],"Illumina":[58],"Oxford":[60],"Nanopore":[61,74],"Technologies.":[62],"Here,":[63],"we":[64],"compare":[65],"performance":[67,191],"MiSeq":[69,94,190,205],"(Illumina)":[70],"MinION":[72,113,159,176],"(Oxford":[73],"Technologies),":[75],"as":[76,78,210],"well":[77],"two":[79],"different":[80,121],"data":[81,180],"processing":[82],"pipelines,":[83],"determine":[85],"effect":[87],"they":[88],"have":[90],"on":[91,138],"results.":[93],"showed":[95],"higher":[96,170],"coverage,":[98],"lower":[99],"error":[100,171],"rate,":[101],"better":[103],"capacity":[104],"detect":[106],"accurately":[108],"estimate":[109],"abundances":[111],"than":[112,155],"R9.4.1":[114],"flow":[115,178],"cell":[116,179],"data.":[117],"The":[118,173],"use":[119],"callers":[123],"(LoFreq":[124],"iVar)":[126],"calculate":[130],"proportions":[133],"had":[134],"a":[135,169,226],"remarkable":[136],"impact":[137],"results":[140],"generated":[141],"from":[142],"wastewater":[143],"samples.":[144],"Freyja,":[145],"coupled":[146],"with":[147,158,184,189],"iVar,":[148],"more":[151],"sensitive":[152],"accurate":[154],"LoFreq,":[156],"especially":[157],"data,":[160],"but":[161],"it":[162],"comes":[163],"at":[164],"cost":[166],"having":[168],"rate.":[172],"analysis":[174],"R10.4.1":[177],"using":[181],"Freyja":[182],"combined":[183],"iVar":[185],"narrows":[186],"gap":[188],"terms":[193],"read":[195],"quality,":[196],"accuracy,":[197],"sensitivity,":[198],"number":[200],"detected":[202],"mutations.":[203],"Although":[204],"should":[206],"still":[207],"considered":[209],"standard":[212],"method":[213],"for":[214],"tracking,":[217],"MinION's":[218],"versatility":[219],"rapid":[221],"turnaround":[222],"time":[223],"represent":[225],"clear":[227],"advantage":[228],"during":[229],"ongoing":[231],"pandemic.":[232]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2023-12-07T00:00:00"}