{"id":"https://openalex.org/W4389236271","doi":"https://doi.org/10.3389/fnimg.2023.1252261","title":"Pseudo-Label Assisted nnU-Net enables automatic segmentation of 7T MRI from a single acquisition","display_name":"Pseudo-Label Assisted nnU-Net enables automatic segmentation of 7T MRI from a single acquisition","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4389236271","doi":"https://doi.org/10.3389/fnimg.2023.1252261","pmid":"https://pubmed.ncbi.nlm.nih.gov/38107773","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10722186"},"language":"en","primary_location":{"id":"doi:10.3389/fnimg.2023.1252261","doi":"https://doi.org/10.3389/fnimg.2023.1252261","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fnimg.2023.1252261","pdf_url":"https://www.frontiersin.org/articles/10.3389/fnimg.2023.1252261/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4387278986","display_name":"Frontiers in Neuroimaging","issn_l":"2813-1193","issn":["2813-1193"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","ki-jl-1","norway-1"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroimaging","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fnimg.2023.1252261/pdf?isPublishedV2=False","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071109533","display_name":"Corinne A. Donnay","orcid":"https://orcid.org/0009-0006-4856-8422","observed_orcids":["https://orcid.org/0009-0006-4856-8422"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Corinne Donnay","raw_affiliation_strings":["Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015714366","display_name":"Henry Dieckhaus","orcid":"https://orcid.org/0000-0003-1390-2444","observed_orcids":["https://orcid.org/0000-0003-1390-2444"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Henry Dieckhaus","raw_affiliation_strings":["qMRI Core, NINDS, National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"qMRI Core, NINDS, National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033313879","display_name":"Charidimos Tsagkas","orcid":"https://orcid.org/0000-0002-2586-6316","observed_orcids":["https://orcid.org/0000-0002-2586-6316"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charidimos Tsagkas","raw_affiliation_strings":["Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063726982","display_name":"Mar\u00eda In\u00e9s Gait\u00e1n","orcid":"https://orcid.org/0000-0003-4455-5641","observed_orcids":["https://orcid.org/0000-0003-4455-5641"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mar\u00eda In\u00e9s Gait\u00e1n","raw_affiliation_strings":["Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088696166","display_name":"Erin Beck","orcid":"https://orcid.org/0000-0001-7839-7958","observed_orcids":["https://orcid.org/0000-0001-7839-7958"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]},{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erin S. Beck","raw_affiliation_strings":["Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, United States","Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, United States","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052713371","display_name":"Andrew Mullins","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Mullins","raw_affiliation_strings":["Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States","qMRI Core, NINDS, National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]},{"raw_affiliation_string":"qMRI Core, NINDS, National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024904743","display_name":"Daniel S. Reich","orcid":"https://orcid.org/0000-0002-2628-4334","observed_orcids":["https://orcid.org/0000-0002-2628-4334"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel S. Reich","raw_affiliation_strings":["Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051620091","display_name":"Govind Nair","orcid":"https://orcid.org/0000-0003-3725-615X","observed_orcids":["https://orcid.org/0000-0003-3725-615X"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Govind Nair","raw_affiliation_strings":["qMRI Core, NINDS, National Institutes of Health, Bethesda, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"qMRI Core, NINDS, National Institutes of Health, Bethesda, MD, United States","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5051620091"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210110767"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":2125,"currency":"USD","value_usd":2125},"fwci":0.9336,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.73512837,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"2","issue":null,"first_page":"1252261","last_page":"1252261"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.005499999970197678,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/7t-mri","display_name":"7T MRI","score":0.8679999709129333},{"id":"https://openalex.org/keywords/whole-brain-segmentation","display_name":"whole-brain segmentation","score":0.7570000290870667},{"id":"https://openalex.org/keywords/lesion-segmentation","display_name":"lesion segmentation","score":0.8740000128746033},{"id":"https://openalex.org/keywords/multiple-sclerosis","display_name":"multiple sclerosis","score":0.9779999852180481},{"id":"https://openalex.org/keywords/nnu-net","display_name":"nnU-Net","score":0.9679999947547913},{"id":"https://openalex.org/keywords/mp2rage","display_name":"MP2RAGE","score":0.8080000281333923},{"id":"https://openalex.org/keywords/skull-stripping","display_name":"skull stripping","score":0.8399999737739563},{"id":"https://openalex.org/keywords/susceptibility-artifacts","display_name":"susceptibility artifacts","score":0.8130000233650208},{"id":"https://openalex.org/keywords/bias-field-correction","display_name":"bias field correction","score":0.6119999885559082},{"id":"https://openalex.org/keywords/lesion-detection","display_name":"lesion detection","score":0.3440000116825104}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7785675525665283},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6384575963020325},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5120669007301331},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4864327907562256},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.47794604301452637},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.4481809735298157},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.44788193702697754},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.4306301474571228},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.27385592460632324}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fnimg.2023.1252261","doi":"https://doi.org/10.3389/fnimg.2023.1252261","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fnimg.2023.1252261","pdf_url":"https://www.frontiersin.org/articles/10.3389/fnimg.2023.1252261/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4387278986","display_name":"Frontiers in Neuroimaging","issn_l":"2813-1193","issn":["2813-1193"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","ki-jl-1","norway-1"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroimaging","raw_type":"journal-article"},{"id":"doi:10.1101/2022.12.22.22283866","doi":"https://doi.org/10.1101/2022.12.22.22283866","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2022.12.22.22283866","pdf_url":"https://www.medrxiv.org/content/medrxiv/early/2022/12/26/2022.12.22.22283866.full.pdf","source":{"id":"https://openalex.org/S3005729997","display_name":"medRxiv","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"medRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:10722186","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10722186","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10722186/pdf/fnimg-02-1252261.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Front Neuroimaging","raw_type":"Text"},{"id":"pmid:38107773","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38107773","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in neuroimaging","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:3b5b15fe013f4545a3f57498e8b49799","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/3b5b15fe013f4545a3f57498e8b49799","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Neuroimaging, Vol 2 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fnimg.2023.1252261","doi":"https://doi.org/10.3389/fnimg.2023.1252261","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fnimg.2023.1252261","pdf_url":"https://www.frontiersin.org/articles/10.3389/fnimg.2023.1252261/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4387278986","display_name":"Frontiers in Neuroimaging","issn_l":"2813-1193","issn":["2813-1193"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","ki-jl-1","norway-1"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroimaging","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8371999859809875}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307781","display_name":"Sanofi","ror":"https://ror.org/027vj4x92"},{"id":"https://openalex.org/F4320312517","display_name":"Vertex Pharmaceuticals","ror":"https://ror.org/00anb1726"},{"id":"https://openalex.org/F4320320084","display_name":"Multiple Sclerosis Society","ror":"https://ror.org/043fwdk81"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389236271.pdf","grobid_xml":"https://content.openalex.org/works/W4389236271.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1572639874","https://openalex.org/W1901129140","https://openalex.org/W1993947467","https://openalex.org/W2004293194","https://openalex.org/W2006858531","https://openalex.org/W2083839350","https://openalex.org/W2096092665","https://openalex.org/W2105552075","https://openalex.org/W2117140276","https://openalex.org/W2117340355","https://openalex.org/W2133127325","https://openalex.org/W2162041043","https://openalex.org/W2257766930","https://openalex.org/W2777074421","https://openalex.org/W2790874154","https://openalex.org/W2806074443","https://openalex.org/W2809191209","https://openalex.org/W2908331852","https://openalex.org/W2911708449","https://openalex.org/W2914540786","https://openalex.org/W2916497546","https://openalex.org/W2920825015","https://openalex.org/W2942752384","https://openalex.org/W2951680115","https://openalex.org/W2977883299","https://openalex.org/W2980236807","https://openalex.org/W3014974815","https://openalex.org/W3036388453","https://openalex.org/W3045740144","https://openalex.org/W3049203242","https://openalex.org/W3115573637","https://openalex.org/W3126990165","https://openalex.org/W3130592898","https://openalex.org/W3152394047","https://openalex.org/W3157690401","https://openalex.org/W3162731900","https://openalex.org/W3186852274","https://openalex.org/W3187472674","https://openalex.org/W3204474939","https://openalex.org/W3214678086","https://openalex.org/W4205882540","https://openalex.org/W4283729341"],"related_works":["https://openalex.org/W4313238380","https://openalex.org/W4404747196","https://openalex.org/W7221813808","https://openalex.org/W4376115651","https://openalex.org/W2527585162","https://openalex.org/W7167443479","https://openalex.org/W7148596567","https://openalex.org/W3026290459","https://openalex.org/W4299841342","https://openalex.org/W7161133423"],"abstract_inverted_index":{"Abstract":[0],"Introduction":[1],"Automatic":[2],"whole":[3,75,378],"brain":[4,76,379],"and":[5,16,27,74,118,149,198,219,246,253,330,364,376,384,449],"lesion":[6,308,337,355,385,436],"segmentation":[7,22,47,77,104,210,300],"at":[8,52,240,271,293,398,439],"7T":[9,150,241,252,272,305,318,324,392,399,412],"presents":[10],"challenges,":[11],"primarily":[12,58],"from":[13,59,110,139,159,281,291,389],"bias":[14],"fields":[15,54],"susceptibility":[17],"artifacts.":[18],"Recent":[19],"advances":[20],"in":[21,83,221,242,325,352],"methods,":[23],"namely":[24],"using":[25,31,136,188,387,427],"atlas-free":[26],"multi-contrast":[28],"(for":[29],"example,":[30],"T":[32,35],"1":[33],"-weighted,":[34,37],"2":[36,88],"fluid":[38],"attenuated":[39],"inversion":[40],"recovery":[41],"or":[42],"FLAIR":[43],"images)":[44],"can":[45,373],"enhance":[46],"performance,":[48],"however":[49],"perfect":[50],"registration":[51],"high":[53],"remain":[55],"a":[56,84,199,311,390,424,457],"challenge":[57],"distortion":[60],"effects.":[61],"We":[62],"sought":[63],"to":[64,69,108,128,296,322,342,348,402,434,453],"use":[65,455],"deep-learning":[66],"algorithms":[67],"(D/L)":[68],"do":[70],"both":[71,243],"skull":[72,238,328,382],"stripping":[73,239,329,383],"on":[78,95,114,141,301],"multiple":[79,100,166],"imaging":[80],"contrasts":[81],"generated":[82,138],"single":[85,391,458],"Magnetization":[86],"Prepared":[87],"Rapid":[89],"Acquisition":[90],"Gradient":[91],"Echoes":[92],"(MP2RAGE)":[93],"acquisition":[94],"participants":[96,162],"clinically":[97,163],"diagnosed":[98,164],"with":[99,119,165,179,223,284,298,310],"sclerosis":[101,167],"(MS).":[102],"The":[103],"results":[105,211,321],"were":[106,176,212,286],"compared":[107],"that":[109],"3T":[111,143,148,224,302,430],"images":[112],"acquired":[113,152],"the":[115,130,133,142,229,236,244,268,345,403,407],"same":[116],"participants,":[117],"commonly":[120,180,459],"available":[121],"software":[122,182],"packages.":[123],"Finally,":[124],"we":[125,444],"explored":[126],"ways":[127],"boost":[129,435],"performance":[131],"of":[132,156,195,314,327,410,456],"D/L":[134],"by":[135,216,250,339,359],"pseudo-labels":[137,431],"trainings":[140],"data":[144,388,413],"(transfer":[145],"learning).":[146],"Methods":[147],"MRI":[151,393,461],"within":[153],"9":[154],"months":[155],"each":[157],"other,":[158],"25":[160],"study":[161],"(mean":[168],"age":[169],"51,":[170],"SD":[171],"16":[172],"years,":[173],"18":[174],"women),":[175],"retrospectively":[177],"analyzed":[178],"used":[181],"packages":[183],"(such":[184],"as":[185,264,357],"FreeSurfer),":[186],"Classification":[187],"Derivative-based":[189],"Features":[190],"(C-DEF),":[191],"nnU-net":[192],"(\u201cno-new-Net\u201d":[193],"version":[194],"U-Net":[196],"algorithm),":[197],"novel":[200],"3T-to-7T":[201],"transfer":[202,415],"learning":[203,371,416],"method,":[204],"Pseudo-Label":[205],"Assisted":[206],"nnU-Net":[207,234,265,285,304,323,396,425],"(PLAn).":[208],"These":[209],"then":[213],"rated":[214],"visually":[215],"trained":[217],"experts":[218],"quantitatively":[220],"comparison":[222],"label":[225],"masks.":[226],"Results":[227],"Of":[228],"previously":[230],"published":[231],"methods":[232,372,405],"considered,":[233,406],"produced":[235,319],"best":[237,269],"qualitative":[245],"quantitative":[247],"ratings":[248],"followed":[249],"C-DEF":[251,299],"FreeSurfer":[254,292],"7T.":[255,294,440],"A":[256],"similar":[257],"trend":[258],"was":[259,266,432],"observed":[260],"for":[261,273],"tissue":[262,275,332],"segmentation,":[263],"again":[267],"method":[270],"all":[274],"classes.":[276],"Dice":[277,365],"Similarity":[278],"Coefficient":[279],"(DSC)":[280],"lesions":[282],"segmented":[283],"1.5":[287],"times":[288],"higher":[289],"than":[290],"Relative":[295],"analysis":[297],"scans,":[303],"had":[306],"lower":[307],"volumes,":[309],"correlation":[312,346],"slope":[313,347],"just":[315],"0.68.":[316],"PLAn":[317],"equivalent":[320],"terms":[326],"most":[331],"classes,":[333],"but":[334],"it":[335],"boosted":[336],"sensitivity":[338],"15%":[340],"relative":[341],"3T,":[343],"increasing":[344],"0.90.":[349],"This":[350,441],"resulted":[351],"significantly":[353],"better":[354],"segmentations":[356,397],"measured":[358],"expert":[360],"rating":[361],"(4%":[362],"increase)":[363],"coefficient":[366],"(6%":[367],"increase).":[368],"Conclusion":[369],"Deep":[370],"produce":[374],"fast":[375],"reliable":[377],"segmentations,":[380],"including":[381],"detection,":[386],"sequence.":[394,462],"While":[395],"are":[400],"superior":[401],"other":[404],"limited":[408],"availability":[409],"labeled":[411],"makes":[414],"an":[417],"attractive":[418],"option.":[419],"In":[420],"this":[421],"case,":[422],"pre-training":[423],"model":[426],"readily":[428,450],"obtained":[429],"shown":[433],"detection":[437],"capabilities":[438],"approach,":[442],"which":[443],"call":[445],"PLAn,":[446],"is":[447],"robust":[448],"adaptable":[451],"due":[452],"its":[454],"gathered":[460]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2023-12-02T00:00:00"}
