{"id":"https://openalex.org/W4388997196","doi":"https://doi.org/10.1016/j.ijbiomac.2023.128437","title":"Putative staphylococcal enterotoxin possesses two common structural motifs for MHC-II binding","display_name":"Putative staphylococcal enterotoxin possesses two common structural motifs for MHC-II binding","publication_year":2023,"publication_date":"2023-11-25","ids":{"openalex":"https://openalex.org/W4388997196","doi":"https://doi.org/10.1016/j.ijbiomac.2023.128437","pmid":"https://pubmed.ncbi.nlm.nih.gov/38013079"},"language":"en","primary_location":{"id":"doi:10.1016/j.ijbiomac.2023.128437","doi":"https://doi.org/10.1016/j.ijbiomac.2023.128437","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.ijbiomac.2023.128437","pdf_url":null,"source":{"id":"https://openalex.org/S83853393","display_name":"International Journal of Biological Macromolecules","issn_l":"0141-8130","issn":["0141-8130","1879-0003"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","jufo-1","medline","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biological Macromolecules","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2023/07/14/2023.07.14.548958.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081768700","display_name":"Shakilur Rahman","orcid":"https://orcid.org/0000-0001-5180-3581","observed_orcids":["https://orcid.org/0000-0001-5180-3581"]},"institutions":[{"id":"https://openalex.org/I145894827","display_name":"Indian Institute of Technology Kharagpur","ror":"https://ror.org/03w5sq511","country_code":"IN","type":"education","lineage":["https://openalex.org/I145894827"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shakilur Rahman","raw_affiliation_strings":["Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India. Electronic address: shakilur.biochem@gmail.com","Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India"],"raw_orcid":"https://orcid.org/0000-0001-5180-3581","affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India. Electronic address: shakilur.biochem@gmail.com","institution_ids":["https://openalex.org/I145894827"]},{"raw_affiliation_string":"Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India","institution_ids":["https://openalex.org/I145894827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024204555","display_name":"Saradindu Saha","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I145894827","display_name":"Indian Institute of Technology Kharagpur","ror":"https://ror.org/03w5sq511","country_code":"IN","type":"education","lineage":["https://openalex.org/I145894827"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Saradindu Saha","raw_affiliation_strings":["Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India","institution_ids":["https://openalex.org/I145894827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114012398","display_name":"Somdeb Bose Dasgupta","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I145894827","display_name":"Indian Institute of Technology Kharagpur","ror":"https://ror.org/03w5sq511","country_code":"IN","type":"education","lineage":["https://openalex.org/I145894827"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Somdeb Bose Dasgupta","raw_affiliation_strings":["Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India","institution_ids":["https://openalex.org/I145894827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007472894","display_name":"Amit Kumar Das","orcid":"https://orcid.org/0000-0001-9703-1898","observed_orcids":["https://orcid.org/0000-0001-9703-1898"]},"institutions":[{"id":"https://openalex.org/I145894827","display_name":"Indian Institute of Technology Kharagpur","ror":"https://ror.org/03w5sq511","country_code":"IN","type":"education","lineage":["https://openalex.org/I145894827"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Amit Kumar Das","raw_affiliation_strings":["Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India. Electronic address: amitk@bt.iitkgp.ac.in","Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India"],"raw_orcid":"https://orcid.org/0000-0001-9703-1898","affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India. Electronic address: amitk@bt.iitkgp.ac.in","institution_ids":["https://openalex.org/I145894827"]},{"raw_affiliation_string":"Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India","institution_ids":["https://openalex.org/I145894827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5007472894"],"corresponding_institution_ids":["https://openalex.org/I145894827"],"apc_list":{"value":3920,"currency":"USD","value_usd":3920},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"256","issue":"Pt 1","first_page":"128437","last_page":"128437"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.6851000189781189,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.6851000189781189,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.2615000009536743,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.009100000374019146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/staphylococcal-enterotoxins","display_name":"staphylococcal enterotoxins","score":0.9049999713897705},{"id":"https://openalex.org/keywords/staphylococcal-superantigens","display_name":"staphylococcal superantigens","score":0.9350000023841858},{"id":"https://openalex.org/keywords/mhc-class-ii-binding","display_name":"MHC class II binding","score":0.9010000228881836},{"id":"https://openalex.org/keywords/t-cell-receptor-interaction","display_name":"T cell receptor interaction","score":0.8759999871253967},{"id":"https://openalex.org/keywords/cytokine-regulation","display_name":"cytokine regulation","score":0.7059999704360962},{"id":"https://openalex.org/keywords/pro-inflammatory-cytokines","display_name":"inflammatory cytokines","score":0.828000009059906},{"id":"https://openalex.org/keywords/anti-inflammatory-cytokines","display_name":"anti-inflammatory cytokines","score":0.9879999756813049},{"id":"https://openalex.org/keywords/protein-structural-motifs","display_name":"protein structural motifs","score":0.5669999718666077}],"concepts":[{"id":"https://openalex.org/C66999527","wikidata":"https://www.wikidata.org/wiki/Q421978","display_name":"Enterotoxin","level":4,"score":0.9330437779426575},{"id":"https://openalex.org/C36333154","wikidata":"https://www.wikidata.org/wiki/Q772950","display_name":"Superantigen","level":4,"score":0.8979718685150146},{"id":"https://openalex.org/C2779489039","wikidata":"https://www.wikidata.org/wiki/Q188121","display_name":"Staphylococcus aureus","level":3,"score":0.6143200993537903},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5906014442443848},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5367326736450195},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.5357438921928406},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5136727690696716},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.5134959816932678},{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.42376166582107544},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3303712010383606},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3251406252384186},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3236846327781677},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2579028606414795},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.15503334999084473},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.14346754550933838},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.13093730807304382},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000949","descriptor_name":"Histocompatibility Antigens Class II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004768","descriptor_name":"Enterotoxins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013210","descriptor_name":"Staphylococcus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018089","descriptor_name":"Superantigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018089","descriptor_name":"Superantigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.ijbiomac.2023.128437","doi":"https://doi.org/10.1016/j.ijbiomac.2023.128437","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.ijbiomac.2023.128437","pdf_url":null,"source":{"id":"https://openalex.org/S83853393","display_name":"International Journal of Biological Macromolecules","issn_l":"0141-8130","issn":["0141-8130","1879-0003"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","jufo-1","medline","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biological Macromolecules","raw_type":"journal-article"},{"id":"doi:10.1101/2023.07.14.548958","doi":"https://doi.org/10.1101/2023.07.14.548958","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2023.07.14.548958","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2023/07/14/2023.07.14.548958.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:38013079","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38013079","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of biological macromolecules","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1101/2023.07.14.548958","doi":"https://doi.org/10.1101/2023.07.14.548958","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2023.07.14.548958","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2023/07/14/2023.07.14.548958.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.9391000270843506}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1203369936","display_name":null,"funder_award_id":"CRG/2020/002622","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"},{"id":"https://openalex.org/G8572416517","display_name":null,"funder_award_id":"EMR/2016","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"},{"id":"https://openalex.org/G8773932912","display_name":null,"funder_award_id":"EMR/2016/002825","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"}],"funders":[{"id":"https://openalex.org/F4320325536","display_name":"Indian Institute of Technology Kharagpur","ror":"https://ror.org/03w5sq511"},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388997196.pdf","grobid_xml":"https://content.openalex.org/works/W4388997196.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W194938466","https://openalex.org/W1558157095","https://openalex.org/W1786329893","https://openalex.org/W1980119902","https://openalex.org/W1986191025","https://openalex.org/W1988784486","https://openalex.org/W1988899912","https://openalex.org/W1989228404","https://openalex.org/W1992192767","https://openalex.org/W1999390565","https://openalex.org/W1999801975","https://openalex.org/W2000636931","https://openalex.org/W2031317540","https://openalex.org/W2032853185","https://openalex.org/W2042182233","https://openalex.org/W2043502308","https://openalex.org/W2081546421","https://openalex.org/W2081984416","https://openalex.org/W2102993309","https://openalex.org/W2106481565","https://openalex.org/W2127322768","https://openalex.org/W2129840067","https://openalex.org/W2131406530","https://openalex.org/W2146006944","https://openalex.org/W2151669381","https://openalex.org/W2153983456","https://openalex.org/W2163910672","https://openalex.org/W2164655645","https://openalex.org/W2170420780","https://openalex.org/W2272152428","https://openalex.org/W2404945014","https://openalex.org/W2581833712","https://openalex.org/W2970568032","https://openalex.org/W2989052455","https://openalex.org/W3124933146","https://openalex.org/W3133449287","https://openalex.org/W3177828909","https://openalex.org/W4212943386","https://openalex.org/W4251751280","https://openalex.org/W4281790889","https://openalex.org/W4308616064","https://openalex.org/W4310058955"],"related_works":["https://openalex.org/W2990010654","https://openalex.org/W573618047","https://openalex.org/W1525084629","https://openalex.org/W222076117","https://openalex.org/W2415755168","https://openalex.org/W1559008995","https://openalex.org/W194938466","https://openalex.org/W2159328613","https://openalex.org/W1990084666","https://openalex.org/W2025538272"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2023-11-26T00:00:00"}