{"id":"https://openalex.org/W4388869936","doi":"https://doi.org/10.1089/cmb.2024.0544","title":"Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets","display_name":"Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4388869936","doi":"https://doi.org/10.1089/cmb.2024.0544","pmid":"https://pubmed.ncbi.nlm.nih.gov/37986724","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10659450"},"language":"en","primary_location":{"id":"doi:10.1089/cmb.2024.0544","doi":"https://doi.org/10.1089/cmb.2024.0544","is_oa":true,"landing_page_url":"https://doi.org/10.1089/cmb.2024.0544","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0544?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0544?download=true","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009407234","display_name":"Guillaume Mar\u00e7ais","orcid":"https://orcid.org/0000-0002-5083-5925","observed_orcids":["https://orcid.org/0000-0002-5083-5925"]},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guillaume Mar\u00e7ais","raw_affiliation_strings":["Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA"],"raw_orcid":"https://orcid.org/0000-0002-5083-5925","affiliations":[{"raw_affiliation_string":"Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014004628","display_name":"Dan DeBlasio","orcid":"https://orcid.org/0000-0003-4110-4431","observed_orcids":["https://orcid.org/0000-0003-4110-4431"]},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan DeBlasio","raw_affiliation_strings":["Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113653378","display_name":"Carl Kingsford","orcid":"https://orcid.org/0000-0002-0118-5516","observed_orcids":["https://orcid.org/0000-0002-0118-5516"]},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Kingsford","raw_affiliation_strings":["Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I74973139"],"apc_list":null,"apc_paid":null,"fwci":1.0539,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72621185,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":95},"biblio":{"volume":"31","issue":"7","first_page":"597","last_page":"615"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9229000210762024,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9229000210762024,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0689999982714653,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.00430000014603138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"de Bruijn graph","score":0.9020000100135803},{"id":"https://openalex.org/keywords/k-mer-selection","display_name":"k-mer selection","score":0.8960000276565552}],"concepts":[{"id":"https://openalex.org/C2779231336","wikidata":"https://www.wikidata.org/wiki/Q7534724","display_name":"Sketch","level":2,"score":0.7458690404891968},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7395737767219543},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6940141320228577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.671227753162384},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5684071779251099},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.5179859399795532},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5136389136314392},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5089375972747803},{"id":"https://openalex.org/C2779808786","wikidata":"https://www.wikidata.org/wiki/Q6664603","display_name":"Locality","level":2,"score":0.48821309208869934},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4199843108654022},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21354049444198608},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09546893835067749},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1089/cmb.2024.0544","doi":"https://doi.org/10.1089/cmb.2024.0544","is_oa":true,"landing_page_url":"https://doi.org/10.1089/cmb.2024.0544","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0544?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11304339","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11304339","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11304339/pdf/cmb.2024.0544.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Comput Biol","raw_type":"Text"},{"id":"pmid:37986724","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37986724","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":"Preprint"},{"id":"pmid:38980804","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38980804","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":"Journal Article"},{"id":"pmh:oai:arXiv.org:2311.03592","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.03592","pdf_url":"https://arxiv.org/pdf/2311.03592","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:10659450","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10659450","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10659450/pdf/nihpp-2311.03592v1.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"},{"id":"doi:10.48550/arxiv.2311.03592","doi":"https://doi.org/10.48550/arxiv.2311.03592","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2311.03592","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.1089/cmb.2024.0544","doi":"https://doi.org/10.1089/cmb.2024.0544","is_oa":true,"landing_page_url":"https://doi.org/10.1089/cmb.2024.0544","pdf_url":"https://www.liebertpub.com/doi/pdf/10.1089/cmb.2024.0544?download=true","source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1310392732","display_name":null,"funder_award_id":"DBI-1937540","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6667550415","display_name":"IIBR:Informatics:Toward an Automated RNA-seq Bioinformatician","funder_award_id":"1937540","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8144893449","display_name":"III:Small: Expressiveness of Genome Graphs: Construction, Comparison, and Heterogeneity","funder_award_id":"2232121","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G9000888253","display_name":"Improved genomic sketching for MUMmer and metagenomics","funder_award_id":"R01HG012470","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388869936.pdf","grobid_xml":"https://content.openalex.org/works/W4388869936.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1972418517","https://openalex.org/W1980664567","https://openalex.org/W1987535905","https://openalex.org/W1988388271","https://openalex.org/W2010454899","https://openalex.org/W2039516104","https://openalex.org/W2058219874","https://openalex.org/W2060884261","https://openalex.org/W2111295912","https://openalex.org/W2144560237","https://openalex.org/W2487384794","https://openalex.org/W2763390627","https://openalex.org/W2950572599","https://openalex.org/W2951822379","https://openalex.org/W2973021521","https://openalex.org/W3016701095","https://openalex.org/W3023465514","https://openalex.org/W3042377559","https://openalex.org/W3043768949","https://openalex.org/W3117679888","https://openalex.org/W3128964673","https://openalex.org/W3182040180","https://openalex.org/W3200242814","https://openalex.org/W4243450674","https://openalex.org/W4285283141","https://openalex.org/W4295443308","https://openalex.org/W4307454143","https://openalex.org/W4307475426","https://openalex.org/W4385708519","https://openalex.org/W4386022705","https://openalex.org/W4386272000"],"related_works":["https://openalex.org/W4306939319","https://openalex.org/W4383313785","https://openalex.org/W7211916529","https://openalex.org/W4416178339","https://openalex.org/W4406858978","https://openalex.org/W3098999355","https://openalex.org/W4388775333","https://openalex.org/W4403587903","https://openalex.org/W7024475122","https://openalex.org/W4385708519"],"abstract_inverted_index":{"Most":[0],"sequence":[1,28,37,82,106],"sketching":[2,39,113,166,188,220],"methods":[3,40,180,221],"work":[4],"by":[5,144,168,247],"selecting":[6],"specific":[7],"k":[8,61,138,149,171],"-mers":[9,172],"from":[10,151,173],"sequences":[11,18],"so":[12],"that":[13,67,100,298],"the":[14,24,45,60,74,77,95,105,110,128,156,170,174,191,283,299,310],"similarity":[15,29],"between":[16],"two":[17,245,256],"can":[19],"be":[20],"estimated":[21],"using":[22,33,36,53,68,81],"only":[23],"sketches.":[25],"Because":[26],"estimating":[27],"is":[30,133,196,213],"much":[31,197],"faster":[32],"sketches":[34,54],"than":[35],"alignment,":[38],"are":[41,90,235,251,261,302,326],"used":[42],"to":[43,65,123,217,254,274,281,288,304,323],"reduce":[44],"computational":[46,49,319],"requirements":[47],"of":[48,59,76,87,97,104,127,136,183,187,193,236,240,266,285,316],"biology":[50],"software.":[51],"Applications":[52],"often":[55],"rely":[56],"on":[57],"properties":[58,89],"-mer":[62,150],"selection":[63],"procedure":[64],"ensure":[66],"a":[69,116,124,134,148,160,165,184,214,263,271],"sketch":[70],"does":[71],"not":[72],"degrade":[73],"quality":[75],"results":[78],"compared":[79],"with":[80,115,205,222,226],"alignment.":[83],"Two":[84],"important":[85],"examples":[86],"such":[88],"locality":[91],"and":[92,199,249,287,318,320],"window":[93,117,228],"guarantees,":[94],"latter":[96],"which":[98,132],"ensures":[99],"no":[101],"long":[102,141],"region":[103],"goes":[107],"unrepresented":[108],"in":[109],"sketch.":[111],"A":[112,314],"method":[114,167,189,273,278],"guarantee,":[118],"implicitly":[119],"or":[120],"explicitly,":[121],"corresponds":[122],"decycling":[125,153,161,194,203],"set":[126,135,154,162,175],"de":[129],"Bruijn":[130],"graph,":[131],"unavoidable":[137,157],"-mers.":[139],"Any":[140],"enough":[142],"sequence,":[143],"definition,":[145],"must":[146],"contain":[147],"any":[152],"(hence,":[155],"property).":[158],"Conversely,":[159],"also":[163],"defines":[164],"choosing":[169],"as":[176],"representatives.":[177],"Although":[178],"current":[179],"use":[181],"one":[182,280,307],"small":[185,209,227],"number":[186,265,315],"families,":[190],"space":[192,284],"sets":[195,204,301],"larger":[198],"largely":[200],"unexplored.":[201],"Finding":[202],"desirable":[206,293],"characteristics":[207],"(e.g.,":[208,225],"remaining":[210,311],"path":[211,312],"length)":[212],"promising":[215],"approach":[216],"discovering":[218],"new":[219],"improved":[223],"performance":[224],"guarantee).":[229],"The":[230],"Minimum":[231],"Decycling":[232],"Sets":[233],"(MDSs)":[234],"particular":[237,257,308],"interest":[238],"because":[239],"their":[241],"minimum":[242],"size.":[243],"Only":[244],"algorithms,":[246],"Mykkeltveit":[248,300],"Champarnaud,":[250],"previously":[252],"known":[253],"generate":[255],"MDSs,":[258],"although":[259],"there":[260],"typically":[262],"vast":[264],"alternative":[267],"MDSs.":[268,276],"We":[269,295],"provide":[270],"simple":[272],"enumerate":[275],"This":[277],"allows":[279],"explore":[282],"MDSs":[286,290],"find":[289],"optimized":[291],"for":[292],"properties.":[294],"give":[296],"evidence":[297,322],"close":[303],"optimal":[305],"regarding":[306],"property,":[309],"length.":[313],"conjectures":[317],"theoretical":[321],"support":[324],"them":[325],"presented.":[327],"Code":[328],"available":[329],"at":[330],"https://github.com/Kingsford-Group/mdsscope":[331]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2023-11-22T00:00:00"}
