{"id":"https://openalex.org/W4388861842","doi":"https://doi.org/10.1158/2767-9764.24599517","title":"Supplementary Table S5 from Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq Data","display_name":"Supplementary Table S5 from Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq Data","publication_year":2023,"publication_date":"2023-11-21","ids":{"openalex":"https://openalex.org/W4388861842","doi":"https://doi.org/10.1158/2767-9764.24599517"},"language":"en","primary_location":{"id":"doi:10.1158/2767-9764.24599517","doi":"https://doi.org/10.1158/2767-9764.24599517","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.24599517","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"supplementary-materials","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1158/2767-9764.24599517","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022597516","display_name":"Rebecca Hoyd","orcid":"https://orcid.org/0000-0003-1210-4491","observed_orcids":["https://orcid.org/0000-0003-1210-4491"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rebecca Hoyd","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1210-4491","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079846181","display_name":"Caroline E. Wheeler","orcid":"https://orcid.org/0000-0002-3374-4909","observed_orcids":["https://orcid.org/0000-0002-3374-4909"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Caroline E. Wheeler","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-3374-4909","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028643512","display_name":"YunZhou Liu","orcid":"https://orcid.org/0000-0002-9892-2438","observed_orcids":["https://orcid.org/0000-0002-9892-2438"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"YunZhou Liu","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9892-2438","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002837933","display_name":"Malvenderjit S. Jagjit Singh","orcid":"https://orcid.org/0000-0001-8198-9153","observed_orcids":["https://orcid.org/0000-0001-8198-9153"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Malvenderjit S. Jagjit Singh","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8198-9153","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080186286","display_name":"Mitchell Muniak","orcid":"https://orcid.org/0000-0001-9919-1457","observed_orcids":["https://orcid.org/0000-0001-9919-1457"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mitchell Muniak","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9919-1457","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054686355","display_name":"Ning Yi Jin","orcid":"https://orcid.org/0000-0002-6689-4671","observed_orcids":["https://orcid.org/0000-0002-6689-4671"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ning Jin","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6689-4671","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056692526","display_name":"Nicholas C. Denko","orcid":"https://orcid.org/0000-0001-6875-734X","observed_orcids":["https://orcid.org/0000-0001-6875-734X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicholas C. Denko","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6875-734X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059652753","display_name":"David Paul Carbone","orcid":"https://orcid.org/0000-0003-3002-1921","observed_orcids":["https://orcid.org/0000-0003-3002-1921"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David P. Carbone","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-3002-1921","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015153331","display_name":"Xiaokui Molly Mo","orcid":"https://orcid.org/0000-0002-9797-2687","observed_orcids":["https://orcid.org/0000-0002-9797-2687"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaokui Mo","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9797-2687","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5031691358","display_name":"Daniel J. Spakowicz","orcid":"https://orcid.org/0000-0003-2314-6435","observed_orcids":["https://orcid.org/0000-0003-2314-6435"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel J. Spakowicz","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-2314-6435","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.3508000075817108,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.3508000075817108,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.20829999446868896,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.09279999881982803,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tumor-microbiota","display_name":"tumor microbiome","score":0.7089999914169312},{"id":"https://openalex.org/keywords/immune-cells","display_name":"immune cells","score":0.8600000143051147},{"id":"https://openalex.org/keywords/betweenness-centrality","display_name":"betweenness centrality","score":0.9869999885559082},{"id":"https://openalex.org/keywords/cancer-types","display_name":"cancer types","score":0.7979999780654907}],"concepts":[{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.7540088295936584},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.6688688397407532},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5699260234832764},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.49619776010513306},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4809502959251404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41394326090812683},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38402748107910156},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2134791910648346},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.1808791160583496},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16724711656570435},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.1354736089706421},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10803213715553284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08719724416732788}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1158/2767-9764.24599517","doi":"https://doi.org/10.1158/2767-9764.24599517","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.24599517","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"doi:10.1158/2767-9764.24599517.v1","doi":"https://doi.org/10.1158/2767-9764.24599517.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.24599517.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/24599517","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Supplementary_Table_S5_from_Exogenous_Sequences_in_Tumors_and_Immune_Cells_Exotic_A_Tool_for_Estimating_the_Microbe_Abundances_in_Tumor_RNA-seq_Data/24599517","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1158/2767-9764.24599517","doi":"https://doi.org/10.1158/2767-9764.24599517","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.24599517","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4388861817","https://openalex.org/W4388865684","https://openalex.org/W4388865606","https://openalex.org/W4387729581","https://openalex.org/W4398555516","https://openalex.org/W4388861904","https://openalex.org/W6912819623","https://openalex.org/W4388865489","https://openalex.org/W4282030196","https://openalex.org/W4391531287"],"abstract_inverted_index":{"Ranked":[0],"list":[1],"of":[2],"microbes":[3],"by":[4],"betweenness":[5],"centrality":[6],"in":[7],"a":[8],"gene-microbe":[9],"network":[10],"controlling":[11],"for":[12],"cancer":[13],"type":[14],"(on":[15],"GitHub":[16],"as":[17],"spakowiczlab/exotic-manuscript/analyses/tables/S4_network_microbe_betweeenness-centrality.csv)":[18]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2023-11-22T00:00:00"}