{"id":"https://openalex.org/W4388489151","doi":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677","title":"Ensemble model for accuracy prediction of protein secondary structure","display_name":"Ensemble model for accuracy prediction of protein secondary structure","publication_year":2023,"publication_date":"2023-11-08","ids":{"openalex":"https://openalex.org/W4388489151","doi":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677"},"language":"en","primary_location":{"id":"doi:10.11591/ijeecs.v32.i3.pp1664-1677","doi":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677","is_oa":true,"landing_page_url":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677","pdf_url":"https://ijeecs.iaescore.com/index.php/IJEECS/article/download/31922/17810","source":{"id":"https://openalex.org/S2764855249","display_name":"Indonesian Journal of Electrical Engineering and Computer Science","issn_l":"2502-4752","issn":["2502-4752","2502-4760"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":["jufo-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4310315009","host_organization_name":"Institute of Advanced Engineering and Science (IAES)","host_organization_lineage":["https://openalex.org/P4310315009"],"host_organization_lineage_names":["Institute of Advanced Engineering and Science (IAES)"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Indonesian Journal of Electrical Engineering and Computer Science","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://ijeecs.iaescore.com/index.php/IJEECS/article/download/31922/17810","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023526724","display_name":"S. Shivaprasad","orcid":"https://orcid.org/0000-0003-0450-1278","observed_orcids":["https://orcid.org/0000-0003-0450-1278"]},"institutions":[{"id":"https://openalex.org/I65674248","display_name":"Visvesvaraya Technological University","ror":"https://ror.org/00ha14p11","country_code":"IN","type":"education","lineage":["https://openalex.org/I65674248"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Srushti C. Shivaprasad","raw_affiliation_strings":["University Visvesvaraya College of Engineering (UVCE)"],"raw_orcid":"https://orcid.org/0000-0003-0450-1278","affiliations":[{"raw_affiliation_string":"University Visvesvaraya College of Engineering (UVCE)","institution_ids":["https://openalex.org/I65674248"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Prathibhavani P. Maruthi","orcid":"https://orcid.org/0009-0009-8963-7158","observed_orcids":["https://orcid.org/0009-0009-8963-7158"]},"institutions":[{"id":"https://openalex.org/I65674248","display_name":"Visvesvaraya Technological University","ror":"https://ror.org/00ha14p11","country_code":"IN","type":"education","lineage":["https://openalex.org/I65674248"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prathibhavani P. Maruthi","raw_affiliation_strings":["University Visvesvaraya College of Engineering (UVCE)"],"raw_orcid":"https://orcid.org/0009-0009-8963-7158","affiliations":[{"raw_affiliation_string":"University Visvesvaraya College of Engineering (UVCE)","institution_ids":["https://openalex.org/I65674248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102814861","display_name":"Teja Shree Venkatesh","orcid":"https://orcid.org/0009-0000-9765-0103","observed_orcids":["https://orcid.org/0009-0000-9765-0103"]},"institutions":[{"id":"https://openalex.org/I65674248","display_name":"Visvesvaraya Technological University","ror":"https://ror.org/00ha14p11","country_code":"IN","type":"education","lineage":["https://openalex.org/I65674248"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Teja Shree Venkatesh","raw_affiliation_strings":["University Visvesvaraya College of Engineering (UVCE)"],"raw_orcid":"https://orcid.org/0009-0000-9765-0103","affiliations":[{"raw_affiliation_string":"University Visvesvaraya College of Engineering (UVCE)","institution_ids":["https://openalex.org/I65674248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087562471","display_name":"Venugopal K.R.","orcid":"https://orcid.org/0009-0005-6091-8483","observed_orcids":["https://orcid.org/0009-0005-6091-8483"]},"institutions":[{"id":"https://openalex.org/I53465836","display_name":"Bangalore University","ror":"https://ror.org/050j2vm64","country_code":"IN","type":"education","lineage":["https://openalex.org/I53465836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Venugopal K. Rajuk","raw_affiliation_strings":["Former Vice Chancellor, Bangalore University"],"raw_orcid":"https://orcid.org/0009-0005-6091-8483","affiliations":[{"raw_affiliation_string":"Former Vice Chancellor, Bangalore University","institution_ids":["https://openalex.org/I53465836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2225,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.36004079,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":95},"biblio":{"volume":"32","issue":"3","first_page":"1664","last_page":"1664"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9009000062942505,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9009000062942505,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.09589999914169312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-secondary-structure-prediction","display_name":"secondary structure prediction","score":0.9990000128746033},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"ensemble learning","score":0.9179999828338623},{"id":"https://openalex.org/keywords/convolutional-neural-networks","display_name":"convolutional neural networks","score":0.8640000224113464},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"support vector machine","score":0.9990000128746033},{"id":"https://openalex.org/keywords/sequence-profiles","display_name":"sequence profiles","score":0.6340000033378601},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"protein structure prediction","score":0.3089999854564667}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6986933946609497},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6444495320320129},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6330399513244629},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6138967871665955},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5573818683624268},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5519735217094421},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.472993940114975},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44942355155944824},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4356754720211029},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.43010854721069336},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3891647160053253},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.11591/ijeecs.v32.i3.pp1664-1677","doi":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677","is_oa":true,"landing_page_url":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677","pdf_url":"https://ijeecs.iaescore.com/index.php/IJEECS/article/download/31922/17810","source":{"id":"https://openalex.org/S2764855249","display_name":"Indonesian Journal of Electrical Engineering and Computer Science","issn_l":"2502-4752","issn":["2502-4752","2502-4760"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":["jufo-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4310315009","host_organization_name":"Institute of Advanced Engineering and Science (IAES)","host_organization_lineage":["https://openalex.org/P4310315009"],"host_organization_lineage_names":["Institute of Advanced Engineering and Science (IAES)"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Indonesian Journal of Electrical Engineering and Computer Science","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.11591/ijeecs.v32.i3.pp1664-1677","doi":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677","is_oa":true,"landing_page_url":"https://doi.org/10.11591/ijeecs.v32.i3.pp1664-1677","pdf_url":"https://ijeecs.iaescore.com/index.php/IJEECS/article/download/31922/17810","source":{"id":"https://openalex.org/S2764855249","display_name":"Indonesian Journal of Electrical Engineering and Computer Science","issn_l":"2502-4752","issn":["2502-4752","2502-4760"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":["jufo-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4310315009","host_organization_name":"Institute of Advanced Engineering and Science (IAES)","host_organization_lineage":["https://openalex.org/P4310315009"],"host_organization_lineage_names":["Institute of Advanced Engineering and Science (IAES)"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Indonesian Journal of Electrical Engineering and Computer Science","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388489151.pdf","grobid_xml":"https://content.openalex.org/works/W4388489151.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1904365287","https://openalex.org/W2008708467","https://openalex.org/W2029476353","https://openalex.org/W2046192291","https://openalex.org/W2107201424","https://openalex.org/W2127496316","https://openalex.org/W2140992384","https://openalex.org/W2160276773","https://openalex.org/W2181749222","https://openalex.org/W2359716859","https://openalex.org/W2516509163","https://openalex.org/W2557283755","https://openalex.org/W2562932360","https://openalex.org/W2768698520","https://openalex.org/W2791790018","https://openalex.org/W2802048770","https://openalex.org/W2888381511","https://openalex.org/W2898210859","https://openalex.org/W2905446269","https://openalex.org/W2949412944","https://openalex.org/W2951092885","https://openalex.org/W2963457143","https://openalex.org/W3088859474","https://openalex.org/W3097471106","https://openalex.org/W3168997536","https://openalex.org/W3178532979","https://openalex.org/W3193830270","https://openalex.org/W3216165545","https://openalex.org/W3216596187","https://openalex.org/W4213373251","https://openalex.org/W4226383776","https://openalex.org/W4237007771","https://openalex.org/W4307878904","https://openalex.org/W4308930019","https://openalex.org/W4311293038","https://openalex.org/W4317209545","https://openalex.org/W4320495713","https://openalex.org/W4394664408"],"related_works":["https://openalex.org/W4387475643","https://openalex.org/W2210098278","https://openalex.org/W4362496989","https://openalex.org/W3116936489","https://openalex.org/W4312371986","https://openalex.org/W121376361","https://openalex.org/W3002094044","https://openalex.org/W2987946433","https://openalex.org/W2900952222","https://openalex.org/W2792101467"],"abstract_inverted_index":{"Predicting":[0],"a":[1,46,69,138,152],"protein\u2019s":[2],"secondary":[3,65,148],"structure":[4,66],"is":[5,31,38,120],"crucial":[6],"for":[7,141],"understanding":[8],"the":[9,16,18,32,56,59,76,82,110,114,123,133],"working":[10],"of":[11,93,98,109,135,147],"proteins.":[12],"Despite":[13],"advancements":[14],"over":[15],"years,":[17],"top":[19],"predictors":[20],"have":[21],"achieved":[22],"only":[23],"80%":[24],"Q8":[25,94],"accuracy":[26,95,146],"when":[27],"sequence":[28],"profile":[29],"information":[30],"sole":[33],"input.":[34],"An":[35],"ensemble":[36],"approach":[37],"proposed":[39,130],"using":[40,103],"convolutional":[41],"neural":[42],"network":[43],"(CNN)":[44],"and":[45,58,101,106,155],"classifier":[47],"known":[48],"as":[49,73,75,137],"support":[50],"vector":[51],"machine":[52],"(SVM)":[53],"on":[54,113],"both":[55],"partial":[57],"whole":[60],"CullPDB":[61],"datasets.":[62],"The":[63,129],"protein":[64,111,149],"(PSS)":[67],"has":[68],"complex":[70],"hierarchical":[71],"structure,":[72],"well":[74],"ability":[77],"to":[78],"take":[79],"into":[80],"account":[81],"reliance":[83],"between":[84],"neighbouring":[85],"labels.":[86],"A":[87],"detailed":[88],"experiment":[89],"yielding":[90],"high":[91],"levels":[92],"with":[96,151],"scores":[97],"97.91%,":[99],"85.13%,":[100],"78.02%":[102],"20%,":[104],"80%,":[105],"100%":[107],"respectively":[108],"residues":[112],"new":[115],"predicted":[116,125],"dataset":[117],"CullPDB6133":[118],"which":[119],"better":[121],"than":[122],"accuracies":[124],"by":[126],"similar":[127],"models.":[128],"methodology":[131],"highlights":[132],"use":[134],"CNN":[136],"general":[139],"framework,":[140],"efficiently":[142],"predicting":[143],"eight-state":[144],"(Q8)":[145],"structures":[150],"low":[153],"time":[154],"space":[156],"complexity.":[157]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2023-11-09T00:00:00"}