{"id":"https://openalex.org/W4388456237","doi":"https://doi.org/10.3389/frans.2023.1278170","title":"Editorial: Plant-microbe omics","display_name":"Editorial: Plant-microbe omics","publication_year":2023,"publication_date":"2023-11-07","ids":{"openalex":"https://openalex.org/W4388456237","doi":"https://doi.org/10.3389/frans.2023.1278170"},"language":"en","primary_location":{"id":"doi:10.3389/frans.2023.1278170","doi":"https://doi.org/10.3389/frans.2023.1278170","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frans.2023.1278170","pdf_url":"https://www.frontiersin.org/articles/10.3389/frans.2023.1278170/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210225546","display_name":"Frontiers in Analytical Science","issn_l":"2673-9283","issn":["2673-9283"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Analytical Science","raw_type":"journal-article"},"volume":null,"type":"editorial","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/frans.2023.1278170/pdf?isPublishedV2=False","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034878585","display_name":"Kim K. Hixson","orcid":"https://orcid.org/0000-0003-3915-7040","observed_orcids":["https://orcid.org/0000-0003-3915-7040"]},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kim K. Hixson","raw_affiliation_strings":["Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Richland, WA, United States","Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Richland, WA, United States","institution_ids":["https://openalex.org/I2801280572"]},{"raw_affiliation_string":"Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, United States","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062845801","display_name":"Amit Dhingra","orcid":"https://orcid.org/0000-0002-4464-2502","observed_orcids":["https://orcid.org/0000-0002-4464-2502"]},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amit Dhingra","raw_affiliation_strings":["Department of Horticultural Sciences, College of Agriculture & Life Science, Texas A&M, College Station, TX, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticultural Sciences, College of Agriculture & Life Science, Texas A&M, College Station, TX, United States","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053275462","display_name":"Francisco Dini\u2010Andreote","orcid":"https://orcid.org/0000-0002-6654-0769","observed_orcids":["https://orcid.org/0000-0002-6654-0769"]},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Francisco Dini-Andreote","raw_affiliation_strings":["Department of Plant Science and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Science and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038289236","display_name":"Mitchel J. Doktycz","orcid":"https://orcid.org/0000-0003-4856-8343","observed_orcids":["https://orcid.org/0000-0003-4856-8343"]},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitchel J. Doktycz","raw_affiliation_strings":["Oak Ridge National Laboratory, Biosciences Division, Oak Ridge, TN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, Biosciences Division, Oak Ridge, TN, United States","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089517241","display_name":"Timothy James Tschaplinski","orcid":"https://orcid.org/0000-0002-9540-6622","observed_orcids":["https://orcid.org/0000-0002-9540-6622"]},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy J. Tschaplinski","raw_affiliation_strings":["Oak Ridge National Laboratory, Biosciences Division, Oak Ridge, TN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, Biosciences Division, Oak Ridge, TN, United States","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055812269","display_name":"Ljiljana Pa\u0161a\u2010Toli\u0107","orcid":"https://orcid.org/0000-0001-9853-5457","observed_orcids":["https://orcid.org/0000-0001-9853-5457","https://orcid.org/0000-0001-8438-5267"]},"institutions":[{"id":"https://openalex.org/I2801280572","display_name":"Environmental Molecular Sciences Laboratory","ror":"https://ror.org/04rc0xn13","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I2801280572","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ljiljana Pa\u0161a-Toli\u0107","raw_affiliation_strings":["Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Richland, WA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Richland, WA, United States","institution_ids":["https://openalex.org/I2801280572"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034878585"],"corresponding_institution_ids":["https://openalex.org/I142606810","https://openalex.org/I2801280572"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":2125,"currency":"USD","value_usd":2125},"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"3","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plant-microbe-interactions","display_name":"plant-microbe interactions","score":1.0},{"id":"https://openalex.org/keywords/multi-omics","display_name":"multi-omics","score":0.9200000166893005},{"id":"https://openalex.org/keywords/rhizosphere","display_name":"rhizosphere","score":0.7139999866485596},{"id":"https://openalex.org/keywords/metatranscriptomics","display_name":"metatranscriptomics","score":0.8840000033378601},{"id":"https://openalex.org/keywords/top-down-proteomics","display_name":"top-down proteomics","score":0.828000009059906},{"id":"https://openalex.org/keywords/post-translational-modification","display_name":"post-translational modification","score":0.8880000114440918},{"id":"https://openalex.org/keywords/single-cell-omics","display_name":"single-cell omics","score":0.9369999766349792},{"id":"https://openalex.org/keywords/plant-pathogen-interaction","display_name":"plant-pathogen interaction","score":0.6549999713897705},{"id":"https://openalex.org/keywords/plant-microbe-symbiosis","display_name":"plant-microbe symbiosis","score":0.8130000233650208},{"id":"https://openalex.org/keywords/sample-preparation","display_name":"sample preparation","score":0.4230000078678131},{"id":"https://openalex.org/keywords/humic-and-fulvic-acids","display_name":"humic and fulvic acids","score":0.8560000061988831},{"id":"https://openalex.org/keywords/polyphenols","display_name":"polyphenols","score":0.6740000247955322}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7082040905952454},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.4397217631340027},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34149134159088135},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3362904191017151},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.33370697498321533},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25044167041778564},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24992161989212036},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07859697937965393},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3389/frans.2023.1278170","doi":"https://doi.org/10.3389/frans.2023.1278170","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frans.2023.1278170","pdf_url":"https://www.frontiersin.org/articles/10.3389/frans.2023.1278170/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210225546","display_name":"Frontiers in Analytical Science","issn_l":"2673-9283","issn":["2673-9283"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Analytical Science","raw_type":"journal-article"},{"id":"pmh:oai:osti.gov:2406800","doi":null,"is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2406800","pdf_url":"https://www.osti.gov/servlets/purl/2406800","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:b29f63285c464386a67ed96f20947944","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/b29f63285c464386a67ed96f20947944","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Analytical Science, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/frans.2023.1278170","doi":"https://doi.org/10.3389/frans.2023.1278170","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frans.2023.1278170","pdf_url":"https://www.frontiersin.org/articles/10.3389/frans.2023.1278170/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210225546","display_name":"Frontiers in Analytical Science","issn_l":"2673-9283","issn":["2673-9283"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Analytical Science","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.40450000762939453}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388456237.pdf","grobid_xml":"https://content.openalex.org/works/W4388456237.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4399053002","https://openalex.org/W3153329701","https://openalex.org/W4396804418","https://openalex.org/W4388591475","https://openalex.org/W4409381432","https://openalex.org/W7162422845","https://openalex.org/W4380574796","https://openalex.org/W3021588759","https://openalex.org/W4415712431","https://openalex.org/W4211258292"],"abstract_inverted_index":{"Editorial":[0],"on":[1,258],"the":[2,11,97,110,127,171,186,203,304],"Research":[3,233,249],"Topic":[4],"Plant-microbe":[5],"omicsOmics-based":[6],"studies":[7,257],"have":[8,105],"evolved":[9],"over":[10],"past":[12],"two":[13],"decades":[14],"to":[15,84,100,139,200,237,245,299,307],"provide":[16,35],"rich":[17],"datasets":[18],"from":[19,170,185,202],"which":[20,120,197,209],"deeper":[21],"system-level":[22],"understanding":[23,80],"can":[24,34,57,74,92,174,210],"be":[25,58,75,94],"unraveled.Omics":[26],"technologies":[27],"(e.g.,":[28],"genomics,":[29],"transcriptomics,":[30,227],"proteomics,":[31],"and":[32,41,50,53,63,70,77,89,134,167,178,181,194,208,226,295],"metabolomics)":[33],"specific":[36],"molecular":[37,55],"insights":[38],"into":[39],"plant":[40,87],"microbe":[42],"fitness,":[43],"disease":[44],"states,":[45],"stress,":[46],"cell":[47,123],"signaling/cell-cell":[48],"communication,":[49],"nutrient":[51,85],"exchange,":[52],"these":[54],"observations":[56],"correlated":[59],"with":[60,177,213,268,281],"system":[61],"phenotype":[62],"function.The":[64],"overall":[65],"health":[66],"of":[67,81,109,129,157,192,206,231,252,274],"plant-microbe":[68,101,247,310],"systems":[69,148],"their":[71],"surrounding":[72],"environments":[73],"assessed,":[76],"a":[78],"greater":[79],"processes":[82],"related":[83],"exchange/cycling,":[86],"disease,":[88],"ecosystem":[90],"homeostasis":[91],"now":[93],"achieved":[95],"via":[96],"latest":[98],"approaches":[99],"omics":[102,117,256,297],"analysis.Plant-microbe":[103],"interactions":[104],"traditionally":[106],"been":[107],"some":[108],"most":[111],"technically":[112],"challenging":[113],"sample":[114,204],"types":[115],"for":[116,228],"analysis.Plant":[118],"tissues,":[119],"contain":[121,154,189],"recalcitrant":[122],"wall":[124],"polymers,":[125],"make":[126],"extraction":[128],"biomolecules":[130,205],"(i.e.,":[131,264],"proteins,":[132],"transcripts,":[133],"metabolites)":[135],"more":[136,282],"involved":[137],"compared":[138],"samples":[140,152],"such":[141,220,286],"as":[142,221,287],"those":[143,222],"analyzed":[144],"in":[145,224,241],"human/":[146],"animal":[147],"or":[149,159,217,262],"clinical":[150],"samples.Plant":[151],"notoriously":[153],"high":[155,190],"levels":[156,191],"polyphenolics":[158],"other":[160],"reactive":[161],"compounds":[162],"that,":[163],"if":[164],"not":[165],"treated":[166],"removed":[168],"properly":[169],"protein":[172,182],"samples,":[173],"negatively":[175,211],"react":[176],"alter":[179],"metabolite":[180],"structure.Samples":[183],"extracted":[184],"rhizosphere":[187,275],"often":[188],"humic":[193],"fulvic":[195],"acids,":[196],"are":[198],"difficult":[199],"remove":[201],"interest":[207],"interfere":[212],"successful":[214],"mass":[215],"spectrometric":[216],"sequencing":[218],"analyses,":[219],"used":[223],"proteomics":[225,289],"example.The":[229],"aim":[230],"this":[232],"Topic,":[234,250],"therefore,":[235],"was":[236],"cover":[238],"current":[239],"research":[240,270],"multi-omics":[242],"applied":[243],"specifically":[244],"elucidating":[246],"interactions.This":[248],"consisting":[251],"four":[253],"articles,":[254],"includes":[255],"plants":[259],"interacting":[260],"symbiotically":[261],"antagonistically":[263],"through":[265],"pathogenic":[266],"infection)":[267],"microorganisms.The":[269],"encompasses":[271],"metatranscriptomics":[272],"analyses":[273,285,290,298],"soils,":[276],"bottom-up":[277],"proteomic":[278,284],"approaches,":[279],"along":[280],"specialized":[283],"top-down":[288],"that":[291],"investigate":[292],"post-translational":[293],"modifications,":[294],"single-cell":[296],"probe":[300],"biomolecular":[301],"changes":[302],"at":[303],"cellular":[305],"level":[306],"elucidate":[308],"various":[309],"interactions.":[311]},"counts_by_year":[],"updated_date":"2026-09-27T08:07:27.782135","created_date":"2023-11-08T00:00:00"}