{"id":"https://openalex.org/W4388095025","doi":"https://doi.org/10.1002/csc2.21139","title":"Simulation\u2010based decision\u2010making and implementation of tools in hybrid crop breeding pipelines","display_name":"Simulation\u2010based decision\u2010making and implementation of tools in hybrid crop breeding pipelines","publication_year":2023,"publication_date":"2023-10-30","ids":{"openalex":"https://openalex.org/W4388095025","doi":"https://doi.org/10.1002/csc2.21139"},"language":"en","primary_location":{"id":"doi:10.1002/csc2.21139","doi":"https://doi.org/10.1002/csc2.21139","is_oa":true,"landing_page_url":"https://doi.org/10.1002/csc2.21139","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/csc2.21139","source":{"id":"https://openalex.org/S48277251","display_name":"Crop Science","issn_l":"0011-183X","issn":["0011-183X","1435-0653"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","norway-1","poland-100","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Crop Science","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/csc2.21139","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000741270","display_name":"Marco Ant\u00f4nio Peixoto","orcid":"https://orcid.org/0000-0003-0564-7068","observed_orcids":["https://orcid.org/0000-0003-0564-7068","https://orcid.org/0000-0002-2178-4196"]},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]},{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Marco Ant\u00f4nio Peixoto","raw_affiliation_strings":["Laborat\u00f3rio de Biometria Universidade Federal de Vi\u00e7osa  Vi\u00e7osa Minas Gerais Brazil","Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA"],"raw_orcid":"https://orcid.org/0000-0003-0564-7068","affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Biometria Universidade Federal de Vi\u00e7osa  Vi\u00e7osa Minas Gerais Brazil","institution_ids":["https://openalex.org/I146165071"]},{"raw_affiliation_string":"Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003762018","display_name":"Igor Ferreira Coelho","orcid":"https://orcid.org/0000-0003-0650-5416","observed_orcids":["https://orcid.org/0000-0003-0650-5416"]},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]},{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Igor Ferreira Coelho","raw_affiliation_strings":["Laborat\u00f3rio de Biometria Universidade Federal de Vi\u00e7osa  Vi\u00e7osa Minas Gerais Brazil","Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA"],"raw_orcid":"https://orcid.org/0000-0003-0650-5416","affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Biometria Universidade Federal de Vi\u00e7osa  Vi\u00e7osa Minas Gerais Brazil","institution_ids":["https://openalex.org/I146165071"]},{"raw_affiliation_string":"Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037573244","display_name":"Kristen A. Leach","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristen A. Leach","raw_affiliation_strings":["Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076204512","display_name":"Leonardo Lopes Bhering","orcid":"https://orcid.org/0000-0002-6072-0996","observed_orcids":["https://orcid.org/0000-0002-6072-0996"]},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Leonardo L. Bhering","raw_affiliation_strings":["Laborat\u00f3rio de Biometria Universidade Federal de Vi\u00e7osa  Vi\u00e7osa Minas Gerais Brazil"],"raw_orcid":"https://orcid.org/0000-0002-6072-0996","affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Biometria Universidade Federal de Vi\u00e7osa  Vi\u00e7osa Minas Gerais Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070155734","display_name":"M\u00e1rcio F. R. Resende","orcid":"https://orcid.org/0000-0002-2367-0766","observed_orcids":["https://orcid.org/0000-0002-2367-0766"]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"M\u00e1rcio F. R. Resende","raw_affiliation_strings":["Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA"],"raw_orcid":"https://orcid.org/0000-0002-2367-0766","affiliations":[{"raw_affiliation_string":"Sweet Corn Breeding and Genomics Lab, University of Florida, Gainesville, Florida, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5070155734"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":{"value":1500,"currency":"USD","value_usd":1500},"apc_paid":{"value":1500,"currency":"USD","value_usd":1500},"fwci":1.5788,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.82494645,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"64","issue":"1","first_page":"110","last_page":"125"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9463000297546387,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9463000297546387,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.04500000178813934,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.0032999999821186066,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genomic-selection","display_name":"genomic selection","score":0.9900000095367432},{"id":"https://openalex.org/keywords/high-throughput-phenotyping","display_name":"high-throughput phenotyping","score":1.0},{"id":"https://openalex.org/keywords/cost-effectiveness","display_name":"cost-effectiveness","score":0.9919999837875366},{"id":"https://openalex.org/keywords/gene-environment-interaction","display_name":"gene-environment interaction","score":0.9570000171661377},{"id":"https://openalex.org/keywords/heritability-of-traits","display_name":"trait heritability","score":0.8320000171661377},{"id":"https://openalex.org/keywords/parental-selection","display_name":"parent selection","score":0.5989999771118164},{"id":"https://openalex.org/keywords/self-pollinated-crops","display_name":"self-pollinating crops","score":0.8420000076293945},{"id":"https://openalex.org/keywords/coalescent-simulation","display_name":"coalescent simulation","score":0.8579999804496765}],"concepts":[{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.7160115242004395},{"id":"https://openalex.org/C2778890363","wikidata":"https://www.wikidata.org/wiki/Q550479","display_name":"Genetic gain","level":4,"score":0.6527513265609741},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.6497053503990173},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6480159759521484},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.629901111125946},{"id":"https://openalex.org/C2992444039","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Genomic selection","level":5,"score":0.5832204818725586},{"id":"https://openalex.org/C104959735","wikidata":"https://www.wikidata.org/wiki/Q4960291","display_name":"Breeding program","level":3,"score":0.5452135801315308},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.484425812959671},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.4700906276702881},{"id":"https://openalex.org/C169282265","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Molecular breeding","level":3,"score":0.4621271789073944},{"id":"https://openalex.org/C155015343","wikidata":"https://www.wikidata.org/wiki/Q788558","display_name":"Plant breeding","level":2,"score":0.426372230052948},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2521653175354004},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17921748757362366},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15100446343421936},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.13498064875602722},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.10717621445655823},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.07886400818824768},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0},{"id":"https://openalex.org/C197321923","wikidata":"https://www.wikidata.org/wiki/Q4886","display_name":"Cultivar","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/csc2.21139","doi":"https://doi.org/10.1002/csc2.21139","is_oa":true,"landing_page_url":"https://doi.org/10.1002/csc2.21139","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/csc2.21139","source":{"id":"https://openalex.org/S48277251","display_name":"Crop Science","issn_l":"0011-183X","issn":["0011-183X","1435-0653"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","norway-1","poland-100","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Crop Science","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1002/csc2.21139","doi":"https://doi.org/10.1002/csc2.21139","is_oa":true,"landing_page_url":"https://doi.org/10.1002/csc2.21139","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/csc2.21139","source":{"id":"https://openalex.org/S48277251","display_name":"Crop Science","issn_l":"0011-183X","issn":["0011-183X","1435-0653"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","norway-1","poland-100","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Crop Science","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.958299994468689,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G5110410264","display_name":null,"funder_award_id":"SCRI\u20102022\u201005258","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G5344174876","display_name":null,"funder_award_id":"AFRI 2019\u201005410","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G6947078101","display_name":null,"funder_award_id":"SCRI 2018-51181-28419","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388095025.pdf","grobid_xml":"https://content.openalex.org/works/W4388095025.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1928998639","https://openalex.org/W1976222739","https://openalex.org/W2030126026","https://openalex.org/W2030590757","https://openalex.org/W2165141658","https://openalex.org/W2171931517","https://openalex.org/W2172142486","https://openalex.org/W2188952724","https://openalex.org/W2276103237","https://openalex.org/W2502051256","https://openalex.org/W2600500039","https://openalex.org/W2610324315","https://openalex.org/W2615032961","https://openalex.org/W2740104414","https://openalex.org/W2742153568","https://openalex.org/W2760544538","https://openalex.org/W2792329433","https://openalex.org/W2809791866","https://openalex.org/W2889464897","https://openalex.org/W2890637087","https://openalex.org/W2903065258","https://openalex.org/W2905096938","https://openalex.org/W2910438511","https://openalex.org/W2918389998","https://openalex.org/W2950451490","https://openalex.org/W2971337632","https://openalex.org/W2982701416","https://openalex.org/W2983803089","https://openalex.org/W3011172731","https://openalex.org/W3025086961","https://openalex.org/W3028200076","https://openalex.org/W3030564468","https://openalex.org/W3039960397","https://openalex.org/W3049611831","https://openalex.org/W3091800549","https://openalex.org/W3096061949","https://openalex.org/W3128615532","https://openalex.org/W3130923033","https://openalex.org/W3131217533","https://openalex.org/W3132104078","https://openalex.org/W3133502806","https://openalex.org/W3154319762","https://openalex.org/W3159677013","https://openalex.org/W3163093990","https://openalex.org/W3170639903","https://openalex.org/W3175292020","https://openalex.org/W3189037948","https://openalex.org/W3196739261","https://openalex.org/W3202822501","https://openalex.org/W3205547713","https://openalex.org/W4220719162","https://openalex.org/W4225101400","https://openalex.org/W4225980190","https://openalex.org/W4246209408","https://openalex.org/W4308639450","https://openalex.org/W4312420017","https://openalex.org/W4378516527"],"related_works":["https://openalex.org/W2467418041","https://openalex.org/W3202477957","https://openalex.org/W4307183439","https://openalex.org/W7051618071","https://openalex.org/W3028200076","https://openalex.org/W4386897428","https://openalex.org/W7014172253","https://openalex.org/W2742153568","https://openalex.org/W7129060505","https://openalex.org/W4399605590"],"abstract_inverted_index":{"Abstract":[0],"New":[1],"technologies":[2],"have":[3],"been":[4],"developed":[5],"over":[6],"the":[7,22,125,137,141,146,151,154,203,212],"last":[8],"few":[9],"years":[10],"aiming":[11],"to":[12,160,191],"support":[13],"breeding":[14,33,44,67,81,84,87,92,98,167,182,227],"pipeline":[15,45,88,93,99],"optimization":[16],"for":[17,48,76,175,185],"long\u2010term":[18,195],"genetic":[19],"gains.":[20],"However,":[21],"implementation":[23,142,155],"of":[24,57,113,143,156,178],"these":[25,216],"new":[26],"tools":[27],"and":[28,51,60,79,103,117,122,173,193,209],"their":[29],"impact":[30],"on":[31],"any":[32],"program's":[34],"budget":[35],"are":[36],"not":[37],"well":[38],"studied.":[39],"Here,":[40],"we":[41],"compare":[42],"multiple":[43],"strategies":[46,75,219],"accounting":[47,174,184],"genomic":[49,95,101,157,186,207],"selection":[50,102,133,158,187,208],"high\u2010throughput":[52],"phenotyping":[53],"(HTP)":[54],"by":[55],"means":[56],"hybrid":[58,65,148,196],"gain":[59,149],"cost\u2010effectiveness.":[61],"We":[62,72,164],"simulated":[63],"a":[64,189],"crop":[66],"program":[68],"through":[69],"coalescent":[70],"theory.":[71],"compared":[73],"two":[74,118],"parental":[77,132],"updates":[78],"four":[80],"pipelines:":[82],"conventional":[83,86,91,97],"pipeline;":[85],"with":[89,94,100,130,169],"HTP;":[90],"selection;":[96],"HTP.":[104],"All":[105],"analyses":[106],"were":[107],"implemented":[108],"under":[109],"three":[110],"different":[111],"levels":[112,177],"genotype\u2010by\u2010environment":[114],"interaction":[115],"(G\u00d7E)":[116],"trait":[119,171],"heritabilities":[120],"(0.3":[121],"0.7).":[123],"Overall,":[124],"results":[126,217],"show":[127],"that":[128,220],"scenarios":[129],"early":[131],"perform":[134],"better":[135],"than":[136],"others.":[138],"In":[139],"addition,":[140],"HTP":[144],"delivered":[145],"highest":[147],"in":[150,181,205,224],"long\u2010term,":[152],"whereas":[153],"seems":[159],"be":[161],"more":[162],"cost\u2010effective.":[163],"suggest,":[165],"considering":[166,199],"programs":[168],"complex":[170],"inheritance":[172],"higher":[176],"G\u00d7E,":[179],"investing":[180],"pipelines":[183],"as":[188],"strategy":[190],"create":[192],"maintain":[194],"gain.":[197],"Moreover,":[198],"an":[200],"unconstrained":[201],"budget,":[202],"investment":[204],"both,":[206],"HTP,":[210],"represents":[211],"best":[213],"strategy.":[214],"Hence,":[215],"provide":[218],"may":[221],"aid":[222],"breeders":[223],"optimizing":[225],"self\u2010pollination":[226],"programs.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":4}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2023-11-01T00:00:00"}