{"id":"https://openalex.org/W4387364840","doi":"https://doi.org/10.1158/2767-9764.24250510","title":"Supplementary Table 3 from Chromatin Accessibility Landscape of Human Triple-negative Breast Cancer Cell Lines Reveals Variation by Patient Donor Ancestry","display_name":"Supplementary Table 3 from Chromatin Accessibility Landscape of Human Triple-negative Breast Cancer Cell Lines Reveals Variation by Patient Donor Ancestry","publication_year":2023,"publication_date":"2023-10-05","ids":{"openalex":"https://openalex.org/W4387364840","doi":"https://doi.org/10.1158/2767-9764.24250510"},"language":"en","primary_location":{"id":"doi:10.1158/2767-9764.24250510","doi":"https://doi.org/10.1158/2767-9764.24250510","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1158/2767-9764.24250510","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"supplementary-materials","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://dx.doi.org/10.1158/2767-9764.24250510","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073655121","display_name":"Alexandra R. Harris","orcid":"https://orcid.org/0000-0002-1049-3131","observed_orcids":["https://orcid.org/0000-0002-1049-3131"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alexandra R. Harris","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1049-3131","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072642337","display_name":"Gatikrushna Panigrahi","orcid":"https://orcid.org/0000-0002-3804-0791","observed_orcids":["https://orcid.org/0000-0002-3804-0791"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gatikrushna Panigrahi","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-3804-0791","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115588460","display_name":"Huaitian Liu","orcid":"https://orcid.org/0000-0002-7791-1502","observed_orcids":["https://orcid.org/0000-0002-7791-1502"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Huaitian Liu","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7791-1502","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068100015","display_name":"Vishal N. Kopard\u00e9","orcid":"https://orcid.org/0000-0001-8978-8495","observed_orcids":["https://orcid.org/0000-0001-8978-8495"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vishal N. Koparde","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8978-8495","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091044409","display_name":"Maeve Bailey\u2010Whyte","orcid":"https://orcid.org/0000-0002-4539-1223","observed_orcids":["https://orcid.org/0000-0002-4539-1223"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Maeve Bailey-Whyte","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-4539-1223","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053591052","display_name":"Tiffany H. Dorsey","orcid":"https://orcid.org/0009-0003-1334-0098","observed_orcids":["https://orcid.org/0009-0003-1334-0098"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tiffany H. Dorsey","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0009-0003-1334-0098","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060515951","display_name":"Clayton Clopton Yates","orcid":"https://orcid.org/0000-0001-5420-9852","observed_orcids":["https://orcid.org/0000-0001-5420-9852"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Clayton C. Yates","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-5420-9852","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5027170042","display_name":"Stefan Ambs","orcid":"https://orcid.org/0000-0001-7651-9309","observed_orcids":["https://orcid.org/0000-0001-7651-9309"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan Ambs","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7651-9309","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9063000082969666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9063000082969666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12820","display_name":"Chromatin Remodeling and Cancer","score":0.05260000005364418,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.020600000396370888,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/triple-negative-breast-cancer","display_name":"triple-negative breast cancer","score":0.9850000143051147},{"id":"https://openalex.org/keywords/chromatin-accessibility","display_name":"chromatin accessibility","score":0.9660000205039978},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"cancer cell lines","score":0.6269999742507935},{"id":"https://openalex.org/keywords/gene-set-enrichment-analysis","display_name":"gene set enrichment analysis","score":0.8360000252723694},{"id":"https://openalex.org/keywords/transcription-factors","display_name":"transcription factors","score":0.972000002861023},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-seq","score":0.7170000076293945},{"id":"https://openalex.org/keywords/epigenetics","display_name":"epigenetics","score":0.574999988079071}],"concepts":[{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.7428706288337708},{"id":"https://openalex.org/C2780110267","wikidata":"https://www.wikidata.org/wiki/Q7843332","display_name":"Triple-negative breast cancer","level":4,"score":0.6984678506851196},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.691001296043396},{"id":"https://openalex.org/C2994423619","wikidata":"https://www.wikidata.org/wiki/Q9103","display_name":"Human breast","level":4,"score":0.6903030276298523},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5836625099182129},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5513597726821899},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.40064334869384766},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38211917877197266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3255806565284729},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2962964177131653},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2556362748146057},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1331457495689392},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10474905371665955},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.07911303639411926},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.07180279493331909}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1158/2767-9764.24250510","doi":"https://doi.org/10.1158/2767-9764.24250510","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1158/2767-9764.24250510","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"doi:10.1158/2767-9764.24250510.v1","doi":"https://doi.org/10.1158/2767-9764.24250510.v1","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1158/2767-9764.24250510.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/24250510","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Supplementary_Table_3_from_Chromatin_Accessibility_Landscape_of_Human_Triple-negative_Breast_Cancer_Cell_Lines_Reveals_Variation_by_Patient_Donor_Ancestry/24250510","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1158/2767-9764.24250510","doi":"https://doi.org/10.1158/2767-9764.24250510","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1158/2767-9764.24250510","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[{"score":0.8371999859809875,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4387376827","https://openalex.org/W4387377867","https://openalex.org/W4387377723","https://openalex.org/W4387376915","https://openalex.org/W4387378041","https://openalex.org/W4386910903","https://openalex.org/W6909017943","https://openalex.org/W4387376733","https://openalex.org/W4387376885","https://openalex.org/W4313891214"],"abstract_inverted_index":{"Supplementary":[0],"table":[1],"3":[2],"displaying":[3],"data":[4,17],"output":[5],"from":[6,18],"gene":[7],"set":[8],"enrichment":[9],"analysis":[10],"for":[11],"transcriptional":[12],"regulators":[13],"performed":[14],"on":[15],"RNA-seq":[16],"TNBC":[19],"cell":[20],"lines.":[21]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2023-10-06T00:00:00"}