{"id":"https://openalex.org/W4386284288","doi":"https://doi.org/10.1158/2767-9764.24058540.v1","title":"Supplementary Fig 8 from Whole-genome CpG-resolution DNA Methylation Profiling of HNSCC Reveals Distinct Mechanisms of Carcinogenesis for Fine-scale HPV+ Cancer Subtypes","display_name":"Supplementary Fig 8 from Whole-genome CpG-resolution DNA Methylation Profiling of HNSCC Reveals Distinct Mechanisms of Carcinogenesis for Fine-scale HPV+ Cancer Subtypes","publication_year":2023,"publication_date":"2023-08-30","ids":{"openalex":"https://openalex.org/W4386284288","doi":"https://doi.org/10.1158/2767-9764.24058540.v1"},"language":"en","primary_location":{"id":"doi:10.1158/2767-9764.24058540.v1","doi":"https://doi.org/10.1158/2767-9764.24058540.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.24058540.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"supplementary-materials","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1158/2767-9764.24058540.v1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038760380","display_name":"Tingting Qin","orcid":"https://orcid.org/0000-0003-3810-7578","observed_orcids":["https://orcid.org/0000-0003-3810-7578"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tingting Qin","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-3810-7578","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077032427","display_name":"Shiting Li","orcid":"https://orcid.org/0000-0002-9074-8957","observed_orcids":["https://orcid.org/0000-0002-9074-8957"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shiting Li","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9074-8957","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005223674","display_name":"Leanne E. Henry","orcid":"https://orcid.org/0009-0003-7554-079X","observed_orcids":["https://orcid.org/0009-0003-7554-079X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leanne E. Henry","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0009-0003-7554-079X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063508746","display_name":"Elysia Chou","orcid":"https://orcid.org/0000-0002-1007-4455","observed_orcids":["https://orcid.org/0000-0002-1007-4455"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elysia Chou","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1007-4455","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054257376","display_name":"Raymond G. Cavalcante","orcid":"https://orcid.org/0000-0002-6986-4283","observed_orcids":["https://orcid.org/0000-0002-6986-4283"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raymond G. Cavalcante","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6986-4283","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084721413","display_name":"Bailey Fabiny Garb","orcid":"https://orcid.org/0000-0002-9230-054X","observed_orcids":["https://orcid.org/0000-0002-9230-054X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bailey F. Garb","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9230-054X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017436055","display_name":"Nisha J. D\u2019Silva","orcid":"https://orcid.org/0000-0001-7030-3187","observed_orcids":["https://orcid.org/0000-0001-7030-3187"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nisha J. D'Silva","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7030-3187","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087457107","display_name":"Laura S. Rozek","orcid":"https://orcid.org/0000-0001-6731-7000","observed_orcids":["https://orcid.org/0000-0001-6731-7000","https://orcid.org/0009-0008-1136-8667"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laura S. Rozek","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6731-7000","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5028712728","display_name":"Maureen A. Sartor","orcid":"https://orcid.org/0000-0001-6155-5702","observed_orcids":["https://orcid.org/0000-0001-6155-5702"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Maureen A. Sartor","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6155-5702","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.8701000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.8701000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10307","display_name":"Head and Neck Cancer Studies","score":0.054099999368190765,"subfield":{"id":"https://openalex.org/subfields/2733","display_name":"Otorhinolaryngology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.03420000150799751,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hpv-positive-head-and-neck-squamous-cell-carcinoma","display_name":"HPV-positive head and neck squamous cell carcinoma","score":0.8659999966621399},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.9179999828338623},{"id":"https://openalex.org/keywords/enhancer-activity","display_name":"enhancer activity","score":0.40400001406669617},{"id":"https://openalex.org/keywords/mira","display_name":"Mira","score":0.49399998784065247},{"id":"https://openalex.org/keywords/ctcf-binding-sites","display_name":"CTCF binding sites","score":0.7329999804496765},{"id":"https://openalex.org/keywords/jund","display_name":"JunD","score":0.6629999876022339},{"id":"https://openalex.org/keywords/nuclear-factor-kappab","display_name":"nuclear factor-kappaB","score":0.878000020980835},{"id":"https://openalex.org/keywords/stat3","display_name":"STAT3","score":0.996999979019165},{"id":"https://openalex.org/keywords/ezh2","display_name":"EZH2","score":0.9729999899864197},{"id":"https://openalex.org/keywords/junb","display_name":"JunB","score":0.8140000104904175},{"id":"https://openalex.org/keywords/keratinization","display_name":"keratinization","score":0.8730000257492065},{"id":"https://openalex.org/keywords/carcinogenesis-mechanisms","display_name":"carcinogenesis mechanisms","score":0.6290000081062317}],"concepts":[{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.5805808305740356},{"id":"https://openalex.org/C2778760011","wikidata":"https://www.wikidata.org/wiki/Q21163346","display_name":"CTCF","level":5,"score":0.5601112246513367},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.5572496056556702},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.5348148941993713},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.5284925699234009},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5163286924362183},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.4760601222515106},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4232124090194702},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.33240121603012085},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.32115012407302856},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3167189955711365},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28912681341171265},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2246406078338623}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1158/2767-9764.24058540.v1","doi":"https://doi.org/10.1158/2767-9764.24058540.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.24058540.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/24058540","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Supplementary_Fig_8_from_Whole-genome_CpG-resolution_DNA_Methylation_Profiling_of_HNSCC_Reveals_Distinct_Mechanisms_of_Carcinogenesis_for_Fine-scale_HPV_Cancer_Subtypes/24058540","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1158/2767-9764.24058540.v1","doi":"https://doi.org/10.1158/2767-9764.24058540.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.24058540.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8560000061988831,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4386284204","https://openalex.org/W4386288432","https://openalex.org/W4386284196","https://openalex.org/W4386294930","https://openalex.org/W4386284493","https://openalex.org/W4386284379","https://openalex.org/W4385892336","https://openalex.org/W4386284192"],"abstract_inverted_index":{"(A-D)":[0],"MIRA":[1,52,57,63,87],"profiles":[2],"of":[3,62],"strong":[4],"and":[5,31,54,72,78,89,101],"weak":[6],"enhancers":[7],"in":[8,17,26,35],"the":[9,18,27,36,103,110],"NHEK":[10,77],"cell":[11,20,29,38,80],"line":[12,21,39],"(A),":[13],"JunD":[14,86],"binding":[15,24,33,70,74],"sites":[16,25,34,71,75],"K562":[19,79],"(B),":[22],"NFKB":[23],"GM10847":[28],"line,":[30],"STAT3":[32],"HeLaS3":[37],"(D)":[40],"Samples":[41],"are":[42],"colored":[43],"by":[44,66,99],"HPV":[45],"tumor":[46],"subtype.":[47],"(E)":[48],"Correlations":[49,84],"between":[50,85],"CTCF":[51],"scores":[53,64,88],"Strong":[55],"Enhancer":[56],"scores.":[58,93],"(F)":[59],"Box":[60],"plot":[61],"separated":[65],"subtype":[67,98],"for":[68],"EZH2":[69],"JunB":[73],"from":[76],"lines,":[81],"respectively.":[82],"(G)":[83],"gene":[90],"expression-based":[91],"keratinization":[92],"All":[94],"scatter":[95],"plots":[96],"separate":[97],"color":[100],"display":[102],"Pearson":[104],"correlation":[105],"coefficient":[106],"(R)":[107],"along":[108],"with":[109],"corresponding":[111],"p-value.":[112]},"counts_by_year":[],"updated_date":"2026-09-24T07:57:37.273135","created_date":"2023-08-31T00:00:00"}
