{"id":"https://openalex.org/W4385637374","doi":"https://doi.org/10.1158/2767-9764.23899653","title":"Supplementary Fig 3 from Whole genome CpG-resolution DNA methylation profiling of HNSCC reveals distinct mechanisms of carcinogenesis for fine-scale HPV+ cancer subtypes","display_name":"Supplementary Fig 3 from Whole genome CpG-resolution DNA methylation profiling of HNSCC reveals distinct mechanisms of carcinogenesis for fine-scale HPV+ cancer subtypes","publication_year":2023,"publication_date":"2023-08-07","ids":{"openalex":"https://openalex.org/W4385637374","doi":"https://doi.org/10.1158/2767-9764.23899653"},"language":"en","primary_location":{"id":"doi:10.1158/2767-9764.23899653","doi":"https://doi.org/10.1158/2767-9764.23899653","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.23899653","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"supplementary-materials","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1158/2767-9764.23899653","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038760380","display_name":"Tingting Qin","orcid":"https://orcid.org/0000-0003-3810-7578","observed_orcids":["https://orcid.org/0000-0003-3810-7578"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tingting Qin","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-3810-7578","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077032427","display_name":"Shiting Li","orcid":"https://orcid.org/0000-0002-9074-8957","observed_orcids":["https://orcid.org/0000-0002-9074-8957"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shiting Li","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9074-8957","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005223674","display_name":"Leanne E. Henry","orcid":"https://orcid.org/0009-0003-7554-079X","observed_orcids":["https://orcid.org/0009-0003-7554-079X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leanne E Henry","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0009-0003-7554-079X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063508746","display_name":"Elysia Chou","orcid":"https://orcid.org/0000-0002-1007-4455","observed_orcids":["https://orcid.org/0000-0002-1007-4455"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elysia Chou","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1007-4455","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054257376","display_name":"Raymond G. Cavalcante","orcid":"https://orcid.org/0000-0002-6986-4283","observed_orcids":["https://orcid.org/0000-0002-6986-4283"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raymond G Cavalcante","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6986-4283","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084721413","display_name":"Bailey Fabiny Garb","orcid":"https://orcid.org/0000-0002-9230-054X","observed_orcids":["https://orcid.org/0000-0002-9230-054X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bailey F Garb","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9230-054X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017436055","display_name":"Nisha J. D\u2019Silva","orcid":"https://orcid.org/0000-0001-7030-3187","observed_orcids":["https://orcid.org/0000-0001-7030-3187"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nisha J. D'Silva","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7030-3187","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087457107","display_name":"Laura S. Rozek","orcid":"https://orcid.org/0000-0001-6731-7000","observed_orcids":["https://orcid.org/0000-0001-6731-7000","https://orcid.org/0009-0008-1136-8667"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laura S. Rozek","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6731-7000","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5028712728","display_name":"Maureen A. Sartor","orcid":"https://orcid.org/0000-0001-6155-5702","observed_orcids":["https://orcid.org/0000-0001-6155-5702"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Maureen A Sartor","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6155-5702","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9545999765396118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9545999765396118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10307","display_name":"Head and Neck Cancer Studies","score":0.03020000085234642,"subfield":{"id":"https://openalex.org/subfields/2733","display_name":"Otorhinolaryngology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.004900000058114529,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.8059999942779541},{"id":"https://openalex.org/keywords/hpv-positive-head-and-neck-squamous-cell-carcinoma","display_name":"HPV-positive head and neck squamous cell carcinoma","score":0.8460000157356262},{"id":"https://openalex.org/keywords/cis-eqtl","display_name":"cis-eQTL","score":0.6809999942779541},{"id":"https://openalex.org/keywords/differentially-methylated-regions","display_name":"differentially methylated regions","score":0.984000027179718},{"id":"https://openalex.org/keywords/cpg-islands","display_name":"CpG islands","score":0.6269999742507935},{"id":"https://openalex.org/keywords/keratin","display_name":"keratin","score":0.46700000762939453},{"id":"https://openalex.org/keywords/immunomodulatory-genes","display_name":"immunomodulatory genes","score":0.4860000014305115},{"id":"https://openalex.org/keywords/carcinogenesis-mechanisms","display_name":"carcinogenesis mechanisms","score":0.6129999756813049},{"id":"https://openalex.org/keywords/hypermethylation","display_name":"hypermethylation","score":0.6589999794960022},{"id":"https://openalex.org/keywords/hypomethylation","display_name":"hypomethylation","score":0.8679999709129333},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.628000020980835}],"concepts":[{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.784949779510498},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7050814628601074},{"id":"https://openalex.org/C154253233","wikidata":"https://www.wikidata.org/wiki/Q14862240","display_name":"Differentially methylated regions","level":5,"score":0.6004830598831177},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5061599612236023},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.451111376285553},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4495507478713989},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4119836688041687},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38500699400901794},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38082730770111084},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.36908501386642456},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2791709303855896},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06189480423927307}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1158/2767-9764.23899653","doi":"https://doi.org/10.1158/2767-9764.23899653","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.23899653","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"doi:10.1158/2767-9764.23899653.v1","doi":"https://doi.org/10.1158/2767-9764.23899653.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.23899653.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/23899653","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Supplementary_Fig_3_from_Whole_genome_CpG-resolution_DNA_methylation_profiling_of_HNSCC_reveals_distinct_mechanisms_of_carcinogenesis_for_fine-scale_HPV_cancer_subtypes/23899653","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1158/2767-9764.23899653","doi":"https://doi.org/10.1158/2767-9764.23899653","is_oa":true,"landing_page_url":"https://doi.org/10.1158/2767-9764.23899653","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.9537000060081482,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4386284196","https://openalex.org/W4386288432","https://openalex.org/W4386284379","https://openalex.org/W4386284192","https://openalex.org/W4385892336","https://openalex.org/W4386284493","https://openalex.org/W4386294946","https://openalex.org/W4386288211"],"abstract_inverted_index":{"Comparison":[0],"of":[1,3,29],"locations":[2],"positive":[4,71],"versus":[5],"negative":[6],"cis-eQTMs":[7],"that":[8],"overlap":[9],"with":[10],"DMRs":[11],"for:":[12],"IMU":[13,18],"vs":[14,19,25],"HPV(-)":[15,26],"(1st":[16],"row),":[17,22],"KRT":[20,24],"(2nd":[21],"and":[23,40,51,67,77],"(3rd":[27],"row)":[28],"each":[30],"panel.":[31],"(A)":[32],"CpG":[33],"island":[34],"annotations;":[35],"(B)":[36],"genic":[37],"annotations.":[38],"1st":[39,66],"2nd":[41,76],"columns":[42,53],"are":[43,54,63,73],"hypermethylated":[44],"in":[45,56,64,74],"the":[46,57,65,75],"first":[47,58],"comparison":[48,59],"group;":[49],"3rd":[50,68],"4th":[52,78],"hypomethylated":[55],"group.":[60],"Negative":[61],"eQTMs":[62,72],"columns,":[69],"while":[70],"columns.":[79]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2023-08-08T00:00:00"}
