{"id":"https://openalex.org/W4385541930","doi":"https://doi.org/10.58530/2022/2683","title":"Quality control and nuisance regression of fMRI, looking out where signal should not be found","display_name":"Quality control and nuisance regression of fMRI, looking out where signal should not be found","publication_year":2023,"publication_date":"2023-08-03","ids":{"openalex":"https://openalex.org/W4385541930","doi":"https://doi.org/10.58530/2022/2683"},"language":"en","primary_location":{"id":"doi:10.58530/2022/2683","doi":"https://doi.org/10.58530/2022/2683","is_oa":false,"landing_page_url":"https://doi.org/10.58530/2022/2683","pdf_url":null,"source":{"id":"https://openalex.org/S4393917449","display_name":"Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition","issn_l":"1524-6965","issn":["1524-6965","1545-4428"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISMRM Annual Meeting","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://osf.io/hz52v/download","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060041007","display_name":"C\u00e9line Provins","orcid":"https://orcid.org/0000-0002-1668-9629","observed_orcids":["https://orcid.org/0000-0002-1668-9629"]},"institutions":[{"id":"https://openalex.org/I2802229882","display_name":"Centre Hospitalier Universitaire Vaudois","ror":"https://ror.org/05a353079","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802229882"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"C\u00e9line Provins","raw_affiliation_strings":["Department of Radiology, University Hospital of Lausanne and University of Lausanne, Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-1668-9629","affiliations":[{"raw_affiliation_string":"Department of Radiology, University Hospital of Lausanne and University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I2802229882","https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005898599","display_name":"Christopher Johnson Markiewicz","orcid":"https://orcid.org/0000-0002-6533-164X","observed_orcids":["https://orcid.org/0000-0002-6533-164X"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Johnson Markiewicz","raw_affiliation_strings":["Department of Psychology, Stanford University, Stanford, CA, US"],"raw_orcid":"https://orcid.org/0000-0002-6533-164X","affiliations":[{"raw_affiliation_string":"Department of Psychology, Stanford University, Stanford, CA, US","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060417820","display_name":"Rastko \u0106iri\u0107","orcid":"https://orcid.org/0000-0001-6347-7939","observed_orcids":["https://orcid.org/0000-0001-6347-7939"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rastko Ciric","raw_affiliation_strings":["Department of Psychology, Stanford University, Stanford, CA, US"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychology, Stanford University, Stanford, CA, US","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041859996","display_name":"Mathias Goncalves","orcid":"https://orcid.org/0000-0002-7252-7771","observed_orcids":["https://orcid.org/0000-0002-7252-7771"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathias Goncalves","raw_affiliation_strings":["Department of Psychology, Stanford University, Stanford, CA, US"],"raw_orcid":"https://orcid.org/0000-0002-7252-7771","affiliations":[{"raw_affiliation_string":"Department of Psychology, Stanford University, Stanford, CA, US","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076557896","display_name":"C\u00e9sar Caballero\u2010Gaudes","orcid":"https://orcid.org/0000-0002-9068-5810","observed_orcids":["https://orcid.org/0000-0002-9068-5810"]},"institutions":[{"id":"https://openalex.org/I4210104355","display_name":"Basque Center on Cognition, Brain and Language","ror":"https://ror.org/01a28zg77","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210104355"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C\u00e9sar Caballero-Gaudes","raw_affiliation_strings":["Basque Center on Cognition, Brain and Language, Donostia, Spain"],"raw_orcid":"https://orcid.org/0000-0002-9068-5810","affiliations":[{"raw_affiliation_string":"Basque Center on Cognition, Brain and Language, Donostia, Spain","institution_ids":["https://openalex.org/I4210104355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046868253","display_name":"Russell Alan Poldrack","orcid":"https://orcid.org/0000-0001-6755-0259","observed_orcids":["https://orcid.org/0000-0001-6755-0259"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Poldrack","raw_affiliation_strings":["Department of Psychology, Stanford University, Stanford, CA, US"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychology, Stanford University, Stanford, CA, US","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074539886","display_name":"Patric Hagmann","orcid":"https://orcid.org/0000-0002-2854-6561","observed_orcids":["https://orcid.org/0000-0002-2854-6561"]},"institutions":[{"id":"https://openalex.org/I2802229882","display_name":"Centre Hospitalier Universitaire Vaudois","ror":"https://ror.org/05a353079","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802229882"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patric Hagmann","raw_affiliation_strings":["Department of Radiology, University Hospital of Lausanne and University of Lausanne, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, University Hospital of Lausanne and University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I2802229882","https://openalex.org/I97565354"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019878487","display_name":"Oscar Est\u00e9ban","orcid":"https://orcid.org/0000-0001-8435-6191","observed_orcids":["https://orcid.org/0000-0001-8435-6191","https://orcid.org/0000-0002-2686-585X"]},"institutions":[{"id":"https://openalex.org/I2802229882","display_name":"Centre Hospitalier Universitaire Vaudois","ror":"https://ror.org/05a353079","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802229882"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Oscar Esteban","raw_affiliation_strings":["Department of Radiology, University Hospital of Lausanne and University of Lausanne, Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-8435-6191","affiliations":[{"raw_affiliation_string":"Department of Radiology, University Hospital of Lausanne and University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I2802229882","https://openalex.org/I97565354"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.0777,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.87178369,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.015699999406933784,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mriqc","display_name":"MRIQC","score":0.6840000152587891},{"id":"https://openalex.org/keywords/fmriprep","display_name":"fMRIPrep","score":1.0},{"id":"https://openalex.org/keywords/artifact-detection","display_name":"artifact detection","score":0.6389999985694885}],"concepts":[{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.7406915426254272},{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.6555735468864441},{"id":"https://openalex.org/C2779244815","wikidata":"https://www.wikidata.org/wiki/Q1156462","display_name":"Nuisance","level":2,"score":0.6099587082862854},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5858832001686096},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.547941267490387},{"id":"https://openalex.org/C83546350","wikidata":"https://www.wikidata.org/wiki/Q1139051","display_name":"Regression","level":2,"score":0.5342117547988892},{"id":"https://openalex.org/C152877465","wikidata":"https://www.wikidata.org/wiki/Q208042","display_name":"Regression analysis","level":2,"score":0.5014369487762451},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4980180263519287},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4760808050632477},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4743301272392273},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.44398224353790283},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.4182206988334656},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3279358148574829},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.30593645572662354},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2944461405277252},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.225254625082016},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.58530/2022/2683","doi":"https://doi.org/10.58530/2022/2683","is_oa":false,"landing_page_url":"https://doi.org/10.58530/2022/2683","pdf_url":null,"source":{"id":"https://openalex.org/S4393917449","display_name":"Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition","issn_l":"1524-6965","issn":["1524-6965","1545-4428"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISMRM Annual Meeting","raw_type":"proceedings-article"},{"id":"doi:10.31219/osf.io/hz52v","doi":"https://doi.org/10.31219/osf.io/hz52v","is_oa":true,"landing_page_url":"https://doi.org/10.31219/osf.io/hz52v","pdf_url":"https://osf.io/hz52v/download","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},{"id":"pmh:oai:share.osf.io:E0020-E94-B67","doi":null,"is_oa":false,"landing_page_url":"http://osf.io/hz52v/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401127","display_name":"OSF Preprints (OSF Preprints)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2799848540","host_organization_name":"Center for Open Science","host_organization_lineage":["https://openalex.org/I2799848540"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"preprint"},{"id":"pmh:oai:share.osf.io:aacb594b-31dd-41bf-af11-8092d39a36cc","doi":null,"is_oa":true,"landing_page_url":"https://osf.io/hz52v","pdf_url":null,"source":{"id":"https://openalex.org/S4306401127","display_name":"OSF Preprints (OSF Preprints)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2799848540","host_organization_name":"Center for Open Science","host_organization_lineage":["https://openalex.org/I2799848540"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.31219/osf.io/hz52v","doi":"https://doi.org/10.31219/osf.io/hz52v","is_oa":true,"landing_page_url":"https://doi.org/10.31219/osf.io/hz52v","pdf_url":"https://osf.io/hz52v/download","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.504800021648407}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1435136973","display_name":"Uncovering the interplay of structure, function, and dynamics of brain connectivity using MRI","funder_award_id":"185872","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G2406800495","display_name":"NIPreps: integrating neuroimaging preprocessing workflows across modalities, populations, and species","funder_award_id":"RF1MH121867","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385541930.pdf","grobid_xml":"https://content.openalex.org/works/W4385541930.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1731560309","https://openalex.org/W1990134753","https://openalex.org/W2128521145","https://openalex.org/W2130010412","https://openalex.org/W2310662295","https://openalex.org/W2467410077","https://openalex.org/W2515376299","https://openalex.org/W2950120067","https://openalex.org/W2951583631","https://openalex.org/W3008903779"],"related_works":["https://openalex.org/W6950566473","https://openalex.org/W4403647397","https://openalex.org/W4324087989","https://openalex.org/W2995844062","https://openalex.org/W4362672407","https://openalex.org/W4368367872","https://openalex.org/W4321210951","https://openalex.org/W2515376299","https://openalex.org/W4400643209","https://openalex.org/W3092301733"],"abstract_inverted_index":{"Quality":[0],"control":[1],"of":[2,21],"functional":[3],"MRI":[4],"data":[5,50],"is":[6,24],"essential":[7],"as":[8],"artifacts":[9],"can":[10,52],"have":[11],"a":[12,22,38,69],"critical":[13],"impact":[14],"on":[15,37],"subsequent":[16],"analysis.":[17],"Yet,":[18],"visual":[19],"assessment":[20],"dataset":[23],"tedious":[25],"and":[26,65],"time-consuming.":[27],"By":[28],"extending":[29],"the":[30,34,44,77],"carpet":[31],"plot":[32],"with":[33],"voxels":[35],"located":[36],"closed":[39],"band":[40],"(or":[41],"\u201ccrown\u201d)":[42],"around":[43],"brain,":[45],"we":[46],"showed":[47],"that":[48],"fMRI":[49],"quality":[51],"be":[53],"assessed":[54],"more":[55],"effectively.":[56],"This":[57],"new":[58,70,84],"feature":[59],"has":[60,73],"been":[61,74],"incorporated":[62],"into":[63],"MRIQC":[64],"fMRIPrep.":[66],"In":[67],"addition,":[68],"nuisance":[71],"regressor":[72],"added":[75],"to":[76],"latter,":[78],"calculated":[79],"from":[80],"timeseries":[81],"within":[82],"this":[83],"\u201ccrown\u201d.":[85]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2023-08-04T00:00:00"}
