{"id":"https://openalex.org/W4385220573","doi":"https://doi.org/10.3390/microorganisms11071860","title":"Analysis of the Intestinal and Faecal Bacterial Microbiota of the Cervidae Family Using 16S Next-Generation Sequencing: A Review","display_name":"Analysis of the Intestinal and Faecal Bacterial Microbiota of the Cervidae Family Using 16S Next-Generation Sequencing: A Review","publication_year":2023,"publication_date":"2023-07-24","ids":{"openalex":"https://openalex.org/W4385220573","doi":"https://doi.org/10.3390/microorganisms11071860","pmid":"https://pubmed.ncbi.nlm.nih.gov/37513032","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10386072"},"language":"en","primary_location":{"id":"doi:10.3390/microorganisms11071860","doi":"https://doi.org/10.3390/microorganisms11071860","is_oa":true,"landing_page_url":"https://doi.org/10.3390/microorganisms11071860","pdf_url":"https://www.mdpi.com/2076-2607/11/7/1860/pdf?version=1690170109","source":{"id":"https://openalex.org/S4210222090","display_name":"Microorganisms","issn_l":"2076-2607","issn":["2076-2607"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-40","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microorganisms","raw_type":"journal-article"},"volume":null,"type":"review","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2076-2607/11/7/1860/pdf?version=1690170109","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061845311","display_name":"Irene Pacheco-Torres","orcid":"https://orcid.org/0000-0002-3584-9093","observed_orcids":["https://orcid.org/0000-0002-3584-9093"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Irene Pacheco-Torres","raw_affiliation_strings":["Livestock Program, Postgraduate College, Texcoco 56230, Mexico"],"raw_orcid":"https://orcid.org/0000-0002-3584-9093","affiliations":[{"raw_affiliation_string":"Livestock Program, Postgraduate College, Texcoco 56230, Mexico","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050406764","display_name":"David Hern\u00e1ndez\u2010S\u00e1nchez","orcid":"https://orcid.org/0000-0002-3281-5840","observed_orcids":["https://orcid.org/0000-0002-3281-5840"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"David Hern\u00e1ndez-S\u00e1nchez","raw_affiliation_strings":["Livestock Program, Postgraduate College, Texcoco 56230, Mexico"],"raw_orcid":"https://orcid.org/0000-0002-3281-5840","affiliations":[{"raw_affiliation_string":"Livestock Program, Postgraduate College, Texcoco 56230, Mexico","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081154453","display_name":"Cristina Garc\u00eda-De la Pe\u00f1a","orcid":"https://orcid.org/0000-0003-0937-4466","observed_orcids":["https://orcid.org/0000-0003-0937-4466","https://orcid.org/0000-0002-9917-0477"]},"institutions":[{"id":"https://openalex.org/I200267027","display_name":"Universidad Ju\u00e1rez del Estado de Durango","ror":"https://ror.org/02w0sqd02","country_code":"MX","type":"education","lineage":["https://openalex.org/I200267027"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Cristina Garc\u00eda-De la Pe\u00f1a","raw_affiliation_strings":["Faculty of Biological Sciences, Juarez University of the State of Durango, Gomez Palacio 35010, Mexico"],"raw_orcid":"https://orcid.org/0000-0003-0937-4466","affiliations":[{"raw_affiliation_string":"Faculty of Biological Sciences, Juarez University of the State of Durango, Gomez Palacio 35010, Mexico","institution_ids":["https://openalex.org/I200267027"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059081116","display_name":"Luis A. Tarango-Ar\u00e1mbula","orcid":"https://orcid.org/0000-0002-7662-1319","observed_orcids":["https://orcid.org/0000-0002-7662-1319"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luis A. Tarango-Ar\u00e1mbula","raw_affiliation_strings":["San Luis Potosi Campus, Postgraduate College, Salinas de Hidalgo 78620, Mexico"],"raw_orcid":"https://orcid.org/0000-0002-7662-1319","affiliations":[{"raw_affiliation_string":"San Luis Potosi Campus, Postgraduate College, Salinas de Hidalgo 78620, Mexico","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042477782","display_name":"Mar\u00eda Magdalena Crosby-Galv\u00e1n","orcid":"https://orcid.org/0000-0003-2826-0632","observed_orcids":["https://orcid.org/0000-0003-2826-0632"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mar\u00eda M. Crosby-Galv\u00e1n","raw_affiliation_strings":["Livestock Program, Postgraduate College, Texcoco 56230, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Livestock Program, Postgraduate College, Texcoco 56230, Mexico","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039634178","display_name":"Paulino S\u00e1nchez-Santill\u00e1n","orcid":"https://orcid.org/0000-0001-8639-1476","observed_orcids":["https://orcid.org/0000-0001-8639-1476"]},"institutions":[{"id":"https://openalex.org/I3130105584","display_name":"Universidad Aut\u00f3noma de Guerrero","ror":"https://ror.org/054tbkd46","country_code":"MX","type":"education","lineage":["https://openalex.org/I3130105584"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Paulino S\u00e1nchez-Santill\u00e1n","raw_affiliation_strings":["Faculty of Veterinary Medicine and Zootechnics No. 2, Autonomous University of Guerrero, Cuajinicuilapa 41940, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Veterinary Medicine and Zootechnics No. 2, Autonomous University of Guerrero, Cuajinicuilapa 41940, Mexico","institution_ids":["https://openalex.org/I3130105584"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5050406764"],"corresponding_institution_ids":[],"apc_list":{"value":2200,"currency":"CHF","value_usd":2447},"apc_paid":{"value":2200,"currency":"CHF","value_usd":2447},"fwci":0.2358,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.19594792,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"11","issue":"7","first_page":"1860","last_page":"1860"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deer","display_name":"deer","score":0.9070000052452087},{"id":"https://openalex.org/keywords/gut-microbiota","display_name":"gut microbiota","score":0.9200000166893005},{"id":"https://openalex.org/keywords/fecal-microbiota","display_name":"fecal microbiota","score":0.9860000014305115},{"id":"https://openalex.org/keywords/microbial-diversity","display_name":"microbial diversity","score":0.7229999899864197},{"id":"https://openalex.org/keywords/zoonotic-pathogens","display_name":"zoonotic pathogens","score":0.8550000190734863},{"id":"https://openalex.org/keywords/seasonal-variation","display_name":"seasonal variation","score":0.7129999995231628},{"id":"https://openalex.org/keywords/diet-and-microbiota","display_name":"diet and microbiome","score":0.6480000019073486},{"id":"https://openalex.org/keywords/16s-rrna-gene-sequencing","display_name":"16S rRNA gene sequencing","score":0.7139999866485596}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8202177286148071},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.577631950378418},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.5530776977539062},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.5069141983985901},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.4983549118041992},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.4128246307373047},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2331370711326599},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.123902827501297},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.06034672260284424},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/microorganisms11071860","doi":"https://doi.org/10.3390/microorganisms11071860","is_oa":true,"landing_page_url":"https://doi.org/10.3390/microorganisms11071860","pdf_url":"https://www.mdpi.com/2076-2607/11/7/1860/pdf?version=1690170109","source":{"id":"https://openalex.org/S4210222090","display_name":"Microorganisms","issn_l":"2076-2607","issn":["2076-2607"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-40","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microorganisms","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10386072","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10386072","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10386072/pdf/microorganisms-11-01860.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microorganisms","raw_type":"Text"},{"id":"pmid:37513032","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37513032","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microorganisms","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:6ad31cf8e2b345e09646b8c54a120030","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/6ad31cf8e2b345e09646b8c54a120030","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Microorganisms, Vol 11, Iss 7, p 1860 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/microorganisms11071860","doi":"https://doi.org/10.3390/microorganisms11071860","is_oa":true,"landing_page_url":"https://doi.org/10.3390/microorganisms11071860","pdf_url":"https://www.mdpi.com/2076-2607/11/7/1860/pdf?version=1690170109","source":{"id":"https://openalex.org/S4210222090","display_name":"Microorganisms","issn_l":"2076-2607","issn":["2076-2607"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-40","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microorganisms","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41850000619888306,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385220573.pdf","grobid_xml":"https://content.openalex.org/works/W4385220573.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W1776185407","https://openalex.org/W1961961309","https://openalex.org/W1964306176","https://openalex.org/W1979878645","https://openalex.org/W2008194879","https://openalex.org/W2009974259","https://openalex.org/W2010576882","https://openalex.org/W2029155338","https://openalex.org/W2073539942","https://openalex.org/W2076699551","https://openalex.org/W2089212356","https://openalex.org/W2110693018","https://openalex.org/W2115203739","https://openalex.org/W2120651325","https://openalex.org/W2123148178","https://openalex.org/W2127013413","https://openalex.org/W2127059753","https://openalex.org/W2139654690","https://openalex.org/W2144287907","https://openalex.org/W2144568881","https://openalex.org/W2150891147","https://openalex.org/W2161480580","https://openalex.org/W2167062509","https://openalex.org/W2176322454","https://openalex.org/W2288215062","https://openalex.org/W2320251182","https://openalex.org/W2338786641","https://openalex.org/W2376962651","https://openalex.org/W2424784766","https://openalex.org/W2461785624","https://openalex.org/W2471770163","https://openalex.org/W2518810629","https://openalex.org/W2554470860","https://openalex.org/W2555851733","https://openalex.org/W2560845740","https://openalex.org/W2595158861","https://openalex.org/W2620098478","https://openalex.org/W2620636718","https://openalex.org/W2730721597","https://openalex.org/W2743115441","https://openalex.org/W2751678104","https://openalex.org/W2767431605","https://openalex.org/W2768975905","https://openalex.org/W2785713493","https://openalex.org/W2789881166","https://openalex.org/W2793832172","https://openalex.org/W2794018304","https://openalex.org/W2808209918","https://openalex.org/W2888887037","https://openalex.org/W2901282808","https://openalex.org/W2911841234","https://openalex.org/W2913372117","https://openalex.org/W2914881336","https://openalex.org/W2922893172","https://openalex.org/W2964962118","https://openalex.org/W2978133624","https://openalex.org/W2982098912","https://openalex.org/W2988396725","https://openalex.org/W2990512216","https://openalex.org/W2991460805","https://openalex.org/W2992562587","https://openalex.org/W2998330200","https://openalex.org/W3005571374","https://openalex.org/W3015079544","https://openalex.org/W3029405873","https://openalex.org/W3029809400","https://openalex.org/W3049306487","https://openalex.org/W3085693468","https://openalex.org/W3097786179","https://openalex.org/W3108288473","https://openalex.org/W3110977584","https://openalex.org/W3111983149","https://openalex.org/W3120891553","https://openalex.org/W3125841184","https://openalex.org/W3136502584","https://openalex.org/W3136889869","https://openalex.org/W3138098406","https://openalex.org/W3138327952","https://openalex.org/W3148237602","https://openalex.org/W3164192454","https://openalex.org/W3165783964","https://openalex.org/W3167379105","https://openalex.org/W3173221278","https://openalex.org/W3177094535","https://openalex.org/W3186533874","https://openalex.org/W3186925520","https://openalex.org/W3195003682","https://openalex.org/W3216114882","https://openalex.org/W4213157581","https://openalex.org/W4213369154","https://openalex.org/W4214648738","https://openalex.org/W4220932729","https://openalex.org/W4235635994","https://openalex.org/W4285802163","https://openalex.org/W4289704676","https://openalex.org/W4319315617","https://openalex.org/W4323312248"],"related_works":["https://openalex.org/W2888887037","https://openalex.org/W7204439369","https://openalex.org/W4410069045","https://openalex.org/W4414529381","https://openalex.org/W4411029595","https://openalex.org/W7160872188","https://openalex.org/W3109552694","https://openalex.org/W2595158861","https://openalex.org/W2604707298","https://openalex.org/W2937168071"],"abstract_inverted_index":{"The":[0],"Cervidae":[1],"family":[2],"has":[3,30],"a":[4,20,89,97],"wide":[5],"distribution":[6],"due":[7],"to":[8,11,18,91],"its":[9,25],"adaptation":[10],"numerous":[12],"ecological":[13],"environments,":[14],"which":[15,87],"allows":[16],"it":[17],"develop":[19,161],"diverse":[21],"microbial":[22,53,124],"community":[23],"in":[24,76,106],"digestive":[26],"tract.":[27],"Recently,":[28],"research":[29],"focused":[31],"on":[32,110],"the":[33,39,100,128,134,137,143,169],"taxonomic":[34],"composition":[35],"and":[36,41,55,67,112,126,133,147,153,159,168],"functionality":[37],"of":[38,44,83,99,103,139,164],"intestinal":[40,111],"faecal":[42,113],"microbiota":[43,104],"different":[45,58],"cervid":[46,148],"species":[47,158],"worldwide,":[48,108],"as":[49,51,62,81,131],"well":[50],"their":[52,165],"diversity":[54,125],"variation":[56],"under":[57],"associated":[59],"factors":[60,122],"such":[61],"age,":[63],"sex,":[64],"diet,":[65],"distribution,":[66],"seasonal":[68],"variation.":[69],"In":[70],"addition,":[71],"there":[72],"is":[73],"special":[74],"interest":[75],"knowing":[77],"how":[78],"cervids":[79,107],"act":[80],"reservoirs":[82],"zoonotic":[84],"pathogenic":[85],"microorganisms,":[86],"represent":[88],"threat":[90],"public":[92],"health.":[93],"This":[94],"review":[95],"provides":[96],"synthesis":[98],"growing":[101],"field":[102],"determination":[105],"focusing":[109],"samples":[114],"using":[115],"16S":[116],"next-generation":[117],"sequencing.":[118],"It":[119],"also":[120],"documents":[121],"influencing":[123],"composition,":[127],"microorganisms":[129],"reported":[130],"pathogenic/zoonotic,":[132],"perspectives":[135],"regarding":[136],"conservation":[138,154],"these":[140,157],"species.":[141],"Knowing":[142],"interactions":[144],"between":[145],"bacteria":[146],"health":[149],"can":[150],"drive":[151],"management":[152],"strategies":[155],"for":[156],"help":[160],"an":[162],"understanding":[163],"evolutionary":[166],"history":[167],"interaction":[170],"with":[171],"emerging":[172],"disease-causing":[173],"microorganisms.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2023-07-25T00:00:00"}