{"id":"https://openalex.org/W4385186366","doi":"https://doi.org/10.1099/mgen.0.001072","title":"Whole-genome sequencing of Chlamydia psittaci from Australasian avian hosts: A genomics approach to a pathogen that still ruffles feathers","display_name":"Whole-genome sequencing of Chlamydia psittaci from Australasian avian hosts: A genomics approach to a pathogen that still ruffles feathers","publication_year":2023,"publication_date":"2023-07-24","ids":{"openalex":"https://openalex.org/W4385186366","doi":"https://doi.org/10.1099/mgen.0.001072","pmid":"https://pubmed.ncbi.nlm.nih.gov/37486739","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10438822"},"language":"en","primary_location":{"id":"doi:10.1099/mgen.0.001072","doi":"https://doi.org/10.1099/mgen.0.001072","is_oa":true,"landing_page_url":"https://doi.org/10.1099/mgen.0.001072","pdf_url":null,"source":{"id":"https://openalex.org/S4210186362","display_name":"Microbial Genomics","issn_l":"2057-5858","issn":["2057-5858"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-40","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbial Genomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1099/mgen.0.001072","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076776677","display_name":"Vasilli Michael Kasimov","orcid":"https://orcid.org/0000-0003-3284-2168","observed_orcids":["https://orcid.org/0000-0003-3284-2168"]},"institutions":[{"id":"https://openalex.org/I174025329","display_name":"University of the Sunshine Coast","ror":"https://ror.org/016gb9e15","country_code":"AU","type":"education","lineage":["https://openalex.org/I174025329"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Vasilli Kasimov","raw_affiliation_strings":["University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, QLD 4557, Australia"],"raw_orcid":"https://orcid.org/0000-0003-3284-2168","affiliations":[{"raw_affiliation_string":"University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, QLD 4557, Australia","institution_ids":["https://openalex.org/I174025329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020306115","display_name":"Rhys T. White","orcid":"https://orcid.org/0000-0001-6620-758X","observed_orcids":["https://orcid.org/0000-0001-6620-758X"]},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I174025329","display_name":"University of the Sunshine Coast","ror":"https://ror.org/016gb9e15","country_code":"AU","type":"education","lineage":["https://openalex.org/I174025329"]},{"id":"https://openalex.org/I4210132331","display_name":"New Zealand Institute for Public Health and Forensic Science","ror":"https://ror.org/0405trq15","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I4210132331"]}],"countries":["AU","NZ"],"is_corresponding":false,"raw_author_name":"Rhys T. White","raw_affiliation_strings":["Institute of Environmental Science and Research, Wellington, New Zealand","The University of Queensland, Australian Centre for Ecogenomics, Brisbane, Queensland 4072, Australia","The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Disease Research Centre, Brisbane, Queensland 4072, Australia","University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, QLD 4557, Australia"],"raw_orcid":"https://orcid.org/0000-0001-6620-758X","affiliations":[{"raw_affiliation_string":"Institute of Environmental Science and Research, Wellington, New Zealand","institution_ids":["https://openalex.org/I4210132331"]},{"raw_affiliation_string":"The University of Queensland, Australian Centre for Ecogenomics, Brisbane, Queensland 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Disease Research Centre, Brisbane, Queensland 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, QLD 4557, Australia","institution_ids":["https://openalex.org/I174025329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080572574","display_name":"Jonathan Foxwell","orcid":"https://orcid.org/0000-0002-5812-0326","observed_orcids":["https://orcid.org/0000-0002-5812-0326"]},"institutions":[{"id":"https://openalex.org/I262074209","display_name":"Ministry for Primary Industries","ror":"https://ror.org/055y4y749","country_code":"NZ","type":"government","lineage":["https://openalex.org/I262074209"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Jonathan Foxwell","raw_affiliation_strings":["Animal Health Laboratory, Ministry for Primary Industries, 66 Ward Street, Upper Hutt 5018, New Zealand"],"raw_orcid":"https://orcid.org/0000-0002-5812-0326","affiliations":[{"raw_affiliation_string":"Animal Health Laboratory, Ministry for Primary Industries, 66 Ward Street, Upper Hutt 5018, New Zealand","institution_ids":["https://openalex.org/I262074209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045972829","display_name":"Cheryl Jenkins","orcid":"https://orcid.org/0000-0002-5966-072X","observed_orcids":["https://orcid.org/0000-0002-5966-072X"]},"institutions":[{"id":"https://openalex.org/I2801559191","display_name":"New South Wales Department of Primary Industries","ror":"https://ror.org/050khh066","country_code":"AU","type":"government","lineage":["https://openalex.org/I2801351115","https://openalex.org/I2801559191"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Cheryl Jenkins","raw_affiliation_strings":["NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia"],"raw_orcid":"https://orcid.org/0000-0002-5966-072X","affiliations":[{"raw_affiliation_string":"NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia","institution_ids":["https://openalex.org/I2801559191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026973921","display_name":"Kristene R. Gedye","orcid":"https://orcid.org/0000-0003-2808-6195","observed_orcids":["https://orcid.org/0000-0003-2808-6195"]},"institutions":[{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Kristene Gedye","raw_affiliation_strings":["Massey University, School of Veterinary Science, Palmerston North 4442, New Zealand"],"raw_orcid":"https://orcid.org/0000-0003-2808-6195","affiliations":[{"raw_affiliation_string":"Massey University, School of Veterinary Science, Palmerston North 4442, New Zealand","institution_ids":["https://openalex.org/I51158804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039518759","display_name":"Yvonne Pannekoek","orcid":"https://orcid.org/0000-0003-1154-652X","observed_orcids":["https://orcid.org/0000-0003-1154-652X"]},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Yvonne Pannekoek","raw_affiliation_strings":["University of Amsterdam, Amsterdam UMC, Department of Medical Microbiology and Infection Prevention, Amsterdam 1105, Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-1154-652X","affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam UMC, Department of Medical Microbiology and Infection Prevention, Amsterdam 1105, Netherlands","institution_ids":["https://openalex.org/I4210151833","https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051331436","display_name":"Martina Jelocnik","orcid":"https://orcid.org/0000-0003-1340-2562","observed_orcids":["https://orcid.org/0000-0003-1340-2562"]},"institutions":[{"id":"https://openalex.org/I174025329","display_name":"University of the Sunshine Coast","ror":"https://ror.org/016gb9e15","country_code":"AU","type":"education","lineage":["https://openalex.org/I174025329"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Martina Jelocnik","raw_affiliation_strings":["University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, QLD 4557, Australia"],"raw_orcid":"https://orcid.org/0000-0003-1340-2562","affiliations":[{"raw_affiliation_string":"University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, QLD 4557, Australia","institution_ids":["https://openalex.org/I174025329"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5051331436"],"corresponding_institution_ids":["https://openalex.org/I174025329"],"apc_list":{"value":1500,"currency":"GBP","value_usd":1839},"apc_paid":{"value":1500,"currency":"GBP","value_usd":1839},"fwci":2.9583,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.9149958,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"9","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.9150000214576721,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.9150000214576721,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12178","display_name":"Bird parasitology and diseases","score":0.03759999945759773,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.01679999940097332,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chlamydia-psittaci","display_name":"Chlamydia psittaci","score":1.0},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.8519999980926514},{"id":"https://openalex.org/keywords/avian-hosts","display_name":"avian hosts","score":0.8980000019073486},{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"multilocus sequence typing","score":0.8199999928474426},{"id":"https://openalex.org/keywords/ompa-genotyping","display_name":"ompA genotyping","score":0.968999981880188},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.8960000276565552},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"phylogenomics","score":0.6980000138282776},{"id":"https://openalex.org/keywords/zoonotic-pathogens","display_name":"zoonotic pathogens","score":0.671999990940094},{"id":"https://openalex.org/keywords/parrots","display_name":"parrots","score":0.5239999890327454},{"id":"https://openalex.org/keywords/pigeons","display_name":"pigeons","score":0.9779999852180481},{"id":"https://openalex.org/keywords/sooty-shearwater","display_name":"sooty shearwater","score":0.9800000190734863},{"id":"https://openalex.org/keywords/zebra-finch","display_name":"zebra finch","score":0.9819999933242798},{"id":"https://openalex.org/keywords/australasia","display_name":"Australasia","score":0.42399999499320984}],"concepts":[{"id":"https://openalex.org/C127745971","wikidata":"https://www.wikidata.org/wiki/Q81025","display_name":"Feather","level":2,"score":0.7463959455490112},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.733113706111908},{"id":"https://openalex.org/C2777667758","wikidata":"https://www.wikidata.org/wiki/Q134275","display_name":"Chlamydia psittaci","level":3,"score":0.7116522789001465},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6889306902885437},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.5840724110603333},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5189523696899414},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5094669461250305},{"id":"https://openalex.org/C2780122209","wikidata":"https://www.wikidata.org/wiki/Q153356","display_name":"Chlamydia","level":2,"score":0.3662569522857666},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3072762191295624},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.20997989177703857},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17715734243392944}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001315","descriptor_name":"Australia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002691","descriptor_name":"Chlamydophila psittaci","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005241","descriptor_name":"Feathers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009956","descriptor_name":"Psittacosis","qualifier_ui":"Q000662","qualifier_name":"veterinary","is_major_topic":true},{"descriptor_ui":"D010856","descriptor_name":"Columbidae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058885","descriptor_name":"Multilocus Sequence Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1099/mgen.0.001072","doi":"https://doi.org/10.1099/mgen.0.001072","is_oa":true,"landing_page_url":"https://doi.org/10.1099/mgen.0.001072","pdf_url":null,"source":{"id":"https://openalex.org/S4210186362","display_name":"Microbial Genomics","issn_l":"2057-5858","issn":["2057-5858"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-40","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbial Genomics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10438822","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10438822","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10438822/pdf/mgen-9-1072.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microb Genom","raw_type":"Text"},{"id":"pmid:37486739","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37486739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbial genomics","raw_type":"Journal Article"},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire/3e4e850e-0b96-49e5-aa76-bfd560107553","doi":null,"is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/3e4e850e-0b96-49e5-aa76-bfd560107553","pdf_url":"https://pure.amsterdamumc.nl/files/150143534/Whole-genome-sequencing-of-chlamydia-psittaci-from-australasian-avian-hosts.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Kasimov, V, White, R T, Foxwell, J, Jenkins, C, Gedye, K, Pannekoek, Y & Jelocnik, M 2023, 'Whole-genome sequencing of Chlamydia psittaci from Australasian avian hosts : A genomics approach to a pathogen that still ruffles feathers', Microbial genomics, vol. 9, no. 7, 001072. https://doi.org/10.1099/mgen.0.001072","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/435373","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/10072/435373","pdf_url":null,"source":{"id":"https://openalex.org/S7407064376","display_name":"Griffith Research Online","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1099/mgen.0.001072","doi":"https://doi.org/10.1099/mgen.0.001072","is_oa":true,"landing_page_url":"https://doi.org/10.1099/mgen.0.001072","pdf_url":null,"source":{"id":"https://openalex.org/S4210186362","display_name":"Microbial Genomics","issn_l":"2057-5858","issn":["2057-5858"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-40","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbial Genomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G4540841198","display_name":"Chlamydial infections of birds, domesticated animals and humans","funder_award_id":"DE190100238","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"}],"funders":[{"id":"https://openalex.org/F4320320984","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422"},{"id":"https://openalex.org/F4320332946","display_name":"NSW Department of Primary Industries","ror":"https://ror.org/050khh066"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385186366.pdf","grobid_xml":"https://content.openalex.org/works/W4385186366.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1969042907","https://openalex.org/W2004116545","https://openalex.org/W2008272662","https://openalex.org/W2026062398","https://openalex.org/W2028353017","https://openalex.org/W2055043387","https://openalex.org/W2087572017","https://openalex.org/W2092051042","https://openalex.org/W2096525273","https://openalex.org/W2096873905","https://openalex.org/W2106961803","https://openalex.org/W2107772251","https://openalex.org/W2112364185","https://openalex.org/W2118442768","https://openalex.org/W2119036309","https://openalex.org/W2120419610","https://openalex.org/W2124277390","https://openalex.org/W2128880918","https://openalex.org/W2129663329","https://openalex.org/W2130634584","https://openalex.org/W2131271579","https://openalex.org/W2141052558","https://openalex.org/W2146590305","https://openalex.org/W2147431410","https://openalex.org/W2159954944","https://openalex.org/W2224995018","https://openalex.org/W2322358787","https://openalex.org/W2395239803","https://openalex.org/W2432815617","https://openalex.org/W2497640358","https://openalex.org/W2582743722","https://openalex.org/W2623366409","https://openalex.org/W2782520275","https://openalex.org/W2792034759","https://openalex.org/W2792887405","https://openalex.org/W2807615397","https://openalex.org/W2885492560","https://openalex.org/W2891078715","https://openalex.org/W2957510110","https://openalex.org/W2963000880","https://openalex.org/W2988237307","https://openalex.org/W2998050414","https://openalex.org/W3005750012","https://openalex.org/W3006913334","https://openalex.org/W3010388423","https://openalex.org/W3020966884","https://openalex.org/W3021901582","https://openalex.org/W3082042567","https://openalex.org/W3096906291","https://openalex.org/W3101143976","https://openalex.org/W3135558070","https://openalex.org/W3137672435","https://openalex.org/W3140109116","https://openalex.org/W3189381741","https://openalex.org/W3192069610","https://openalex.org/W3215620685","https://openalex.org/W4206150314","https://openalex.org/W4213418053","https://openalex.org/W4250297812","https://openalex.org/W4281382521","https://openalex.org/W4307033842","https://openalex.org/W4308925032","https://openalex.org/W4321487280","https://openalex.org/W4378082970","https://openalex.org/W4378696689"],"related_works":["https://openalex.org/W4307033842","https://openalex.org/W4321487280","https://openalex.org/W7096204853","https://openalex.org/W4378696689","https://openalex.org/W4308834177","https://openalex.org/W2792887405","https://openalex.org/W4415038528","https://openalex.org/W4410946737","https://openalex.org/W6960095696","https://openalex.org/W2326135459"],"abstract_inverted_index":{"Chlamydia":[0,25],"psittaci":[1,13,35,47,68,76,107,125,144,264],"is":[2,26,38],"a":[3,186,193,212,234,241],"globally":[4],"distributed":[5],"veterinary":[6],"pathogen":[7],"with":[8],"zoonotic":[9],"potential.":[10],"Although":[11],"C.":[12,34,46,67,75,106,124,143,263],"infections":[14],"have":[15],"been":[16],"reported":[17],"in":[18,41,171,185,206,224],"various":[19,129],"hosts,":[20,229],"isolation":[21],"and":[22,51,83,93,100,115,133,151,160,196,199,208,211,218,226,240,249,265],"culture":[23],"of":[24,44,190,262,272],"challenging,":[27],"hampering":[28],"efforts":[29],"to":[30,63,154],"produce":[31],"contemporary":[32],"global":[33,66,259],"genomes.":[36],"This":[37,252],"particularly":[39],"evident":[40],"the":[42,65,88,141,155,172,176,181,258,268],"lack":[43],"avian":[45,131],"genomes":[48,77,145],"from":[49,78,98,128,136,147,180,192,247],"Australia":[50,99,248],"New":[52,101,148,250],"Zealand.":[53,102,251],"In":[54],"this":[55,273],"study,":[56],"we":[57,72],"used":[58],"culture-independent":[59],"probe-based":[60],"whole-genome":[61],"sequencing":[62],"expand":[64],"genome":[69],"catalogue.":[70],"Here,":[71],"provide":[73],"new":[74,255],"two":[79],"pigeons,":[80],"six":[81],"psittacines,":[82],"novel":[84,177],"hosts":[85,132],"such":[86,230],"as":[87,231],"Australian":[89,166,182],"bustard":[90,183],"(Ardeotis":[91],"australis)":[92],"sooty":[94,213],"shearwater":[95],"(Ardenna":[96],"grisea)":[97],"We":[103,138],"also":[104,169],"evaluated":[105],"genetic":[108],"diversity":[109,261],"using":[110],"multilocus":[111],"sequence":[112,157],"typing":[113],"(MLST)":[114],"major":[116],"outer":[117],"membrane":[118],"protein":[119],"(ompA)":[120],"genotyping":[121,201],"on":[122],"additional":[123],"-positive":[126],"samples":[127],"captive":[130,209,232],"field":[134],"isolates":[135],"Australasia.":[137],"showed":[139],"that":[140],"first":[142],"sequenced":[146],"Zealand":[149],"parrots":[150,210],"pigeons":[152,225],"belong":[153],"clonal":[156],"type":[158],"(ST)24":[159],"diverse":[161,188],"\u2018pigeon-type\u2019":[162],"ST27":[163],"clade,":[164],"respectively.":[165],"parrot-derived":[167],"strains":[168,191],"clustered":[170,184],"ST24":[173],"group,":[174],"whereas":[175],"ST332":[178],"strain":[179],"genetically":[187],"clade":[189],"fulmar,":[194],"parrot,":[195],"livestock.":[197],"MLST":[198],"ompA":[200,219],"revealed":[202],"ST24/ompA":[203],"genotype":[204],"A":[205],"wild":[207],"shearwater,":[214],"whilst":[215],"\u2018pigeon-types\u2019":[216],"(ST27/35":[217],"genotypes":[220],"B/E)":[221],"were":[222],"found":[223],"other":[227],"atypical":[228],"parrots,":[233],"little":[235],"blue":[236],"penguin/Koror\u0101":[237],"(Eudyptula":[238],"minor)":[239],"zebra":[242],"finch":[243],"(Taeniopygia":[244],"guttata":[245],"castanotis)":[246],"study":[253],"provides":[254],"insights":[256],"into":[257],"phylogenomic":[260],"further":[266],"demonstrates":[267],"multi-host":[269],"generalist":[270],"capacity":[271],"pathogen.":[274]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":12}],"updated_date":"2026-11-13T13:42:25.865203","created_date":"2023-07-25T00:00:00"}
