{"id":"https://openalex.org/W4383501019","doi":"https://doi.org/10.1016/j.micpath.2023.106248","title":"Genomic typing and virulence gene profile analysis of Salmonella Derby from different sources","display_name":"Genomic typing and virulence gene profile analysis of Salmonella Derby from different sources","publication_year":2023,"publication_date":"2023-07-08","ids":{"openalex":"https://openalex.org/W4383501019","doi":"https://doi.org/10.1016/j.micpath.2023.106248","pmid":"https://pubmed.ncbi.nlm.nih.gov/37423493"},"language":"en","primary_location":{"id":"doi:10.1016/j.micpath.2023.106248","doi":"https://doi.org/10.1016/j.micpath.2023.106248","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.micpath.2023.106248","pdf_url":null,"source":{"id":"https://openalex.org/S113190374","display_name":"Microbial Pathogenesis","issn_l":"0882-4010","issn":["0882-4010","1096-1208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbial Pathogenesis","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038372672","display_name":"Zhaoxu Jiang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoxu Jiang","raw_affiliation_strings":["School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100336705","display_name":"Donghui Li","orcid":"https://orcid.org/0000-0003-3335-4537","observed_orcids":["https://orcid.org/0000-0003-3335-4537"]},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donghui Li","raw_affiliation_strings":["School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101461100","display_name":"Zhenhai Liu","orcid":"https://orcid.org/0000-0001-5570-8450","observed_orcids":["https://orcid.org/0000-0001-5570-8450"]},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenhai Liu","raw_affiliation_strings":["School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102412297","display_name":"Xiaorui Dong","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaorui Dong","raw_affiliation_strings":["School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100725216","display_name":"Zijun Liu","orcid":"https://orcid.org/0009-0001-2988-1847","observed_orcids":["https://orcid.org/0009-0001-2988-1847"]},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zijun Liu","raw_affiliation_strings":["School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112967993","display_name":"Daoshi Cui","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daoshi Cui","raw_affiliation_strings":["Qilu Animal Health Products Co., Ltd, Jinan, 250100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qilu Animal Health Products Co., Ltd, Jinan, 250100, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067054815","display_name":"Shigan Yan","orcid":"https://orcid.org/0000-0002-7270-2445","observed_orcids":["https://orcid.org/0000-0002-7270-2445"]},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shigan Yan","raw_affiliation_strings":["School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China. Electronic address: yanshigan@126.com","School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China. Electronic address: yanshigan@126.com","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100624261","display_name":"Liping Zhu","orcid":"https://orcid.org/0000-0003-3780-9615","observed_orcids":["https://orcid.org/0000-0003-3780-9615"]},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liping Zhu","raw_affiliation_strings":["School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China. Electronic address: zhuliping2012@aliyun.com","School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China"],"raw_orcid":"https://orcid.org/0000-0003-3780-9615","affiliations":[{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China. Electronic address: zhuliping2012@aliyun.com","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5067054815","https://openalex.org/A5100624261"],"corresponding_institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"],"apc_list":{"value":2960,"currency":"USD","value_usd":2960},"apc_paid":null,"fwci":0.4553,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.56843589,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":95},"biblio":{"volume":"182","issue":null,"first_page":"106248","last_page":"106248"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/salmonella-derby","display_name":"Salmonella Derby","score":0.9919999837875366},{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"multilocus sequence typing","score":0.9679999947547913},{"id":"https://openalex.org/keywords/core-genome-mlst","display_name":"core genome MLST","score":0.9679999947547913},{"id":"https://openalex.org/keywords/whole-genome-mlst","display_name":"whole genome MLST","score":0.9779999852180481},{"id":"https://openalex.org/keywords/virulence-genes","display_name":"virulence genes","score":0.9419999718666077},{"id":"https://openalex.org/keywords/phylogenetic-relationships","display_name":"phylogenetic relationships","score":0.7609999775886536},{"id":"https://openalex.org/keywords/bacterial-typing","display_name":"strain typing","score":0.42399999499320984},{"id":"https://openalex.org/keywords/poultry","display_name":"poultry","score":0.31299999356269836},{"id":"https://openalex.org/keywords/pigs","display_name":"pigs","score":0.9539999961853027},{"id":"https://openalex.org/keywords/human-isolates","display_name":"human isolates","score":0.6320000290870667}],"concepts":[{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.9487515687942505},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7820923328399658},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.7755439281463623},{"id":"https://openalex.org/C2779607309","wikidata":"https://www.wikidata.org/wiki/Q2264864","display_name":"Salmonella enterica","level":4,"score":0.7117182016372681},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.6456934809684753},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6206611394882202},{"id":"https://openalex.org/C10389963","wikidata":"https://www.wikidata.org/wiki/Q848328","display_name":"Serotype","level":2,"score":0.6076709032058716},{"id":"https://openalex.org/C2781065037","wikidata":"https://www.wikidata.org/wiki/Q150839","display_name":"Salmonella","level":3,"score":0.601707398891449},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.5697168111801147},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5554295778274536},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5420871376991272},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4715207815170288},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.47124558687210083},{"id":"https://openalex.org/C2780258820","wikidata":"https://www.wikidata.org/wiki/Q5195454","display_name":"Genomic island","level":4,"score":0.4401557445526123},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43868255615234375},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.23919156193733215},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.08552417159080505}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012475","descriptor_name":"Salmonella","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058885","descriptor_name":"Multilocus Sequence Typing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.micpath.2023.106248","doi":"https://doi.org/10.1016/j.micpath.2023.106248","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.micpath.2023.106248","pdf_url":null,"source":{"id":"https://openalex.org/S113190374","display_name":"Microbial Pathogenesis","issn_l":"0882-4010","issn":["0882-4010","1096-1208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbial Pathogenesis","raw_type":"journal-article"},{"id":"pmid:37423493","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37423493","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbial pathogenesis","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8048999905586243,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1423883286","display_name":null,"funder_award_id":"2014GGB01661","funder_id":"https://openalex.org/F4320333596","funder_display_name":"Key Technology Research and Development Program of Shandong"},{"id":"https://openalex.org/G3071067967","display_name":null,"funder_award_id":"2019GNC106154","funder_id":"https://openalex.org/F4320333596","funder_display_name":"Key Technology Research and Development Program of Shandong"},{"id":"https://openalex.org/G7074384320","display_name":null,"funder_award_id":"2017YFC1601404","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7581862826","display_name":null,"funder_award_id":"ZR2018LC003","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"}],"funders":[{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320333596","display_name":"Key Technology Research and Development Program of Shandong","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1519644081","https://openalex.org/W1627263949","https://openalex.org/W1849830312","https://openalex.org/W1966822396","https://openalex.org/W1969001805","https://openalex.org/W2011207731","https://openalex.org/W2018948789","https://openalex.org/W2020875069","https://openalex.org/W2025184174","https://openalex.org/W2031303523","https://openalex.org/W2031947305","https://openalex.org/W2032142842","https://openalex.org/W2058249310","https://openalex.org/W2059462675","https://openalex.org/W2066476950","https://openalex.org/W2074012369","https://openalex.org/W2105081307","https://openalex.org/W2106090237","https://openalex.org/W2109749725","https://openalex.org/W2119123521","https://openalex.org/W2120902911","https://openalex.org/W2122343132","https://openalex.org/W2128352784","https://openalex.org/W2129933858","https://openalex.org/W2138271600","https://openalex.org/W2138952930","https://openalex.org/W2139760555","https://openalex.org/W2142503351","https://openalex.org/W2156062114","https://openalex.org/W2156911394","https://openalex.org/W2271529640","https://openalex.org/W2730252722","https://openalex.org/W2749462668","https://openalex.org/W2768017947","https://openalex.org/W2796241996","https://openalex.org/W2803232767","https://openalex.org/W2900102202","https://openalex.org/W2904840344","https://openalex.org/W2938508698","https://openalex.org/W2991454167","https://openalex.org/W3025102887","https://openalex.org/W3047431890","https://openalex.org/W3122843187","https://openalex.org/W3127124714","https://openalex.org/W3139358543","https://openalex.org/W3173983940","https://openalex.org/W3200367815","https://openalex.org/W3216508890","https://openalex.org/W4224270837","https://openalex.org/W4298009886","https://openalex.org/W6811136830","https://openalex.org/W6843957548"],"related_works":["https://openalex.org/W2803232767","https://openalex.org/W2934656750","https://openalex.org/W4400881950","https://openalex.org/W3165323368","https://openalex.org/W2749462668","https://openalex.org/W4353051345","https://openalex.org/W2526504161","https://openalex.org/W4417085671","https://openalex.org/W1981065475","https://openalex.org/W3195484771"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2023-07-08T00:00:00"}