{"id":"https://openalex.org/W4382196038","doi":"https://doi.org/10.1094/phytofr-01-23-0003-r","title":"Comparison of Sequencing Methods for Obtaining a Whole Genome of Pea Necrotic Yellow Dwarf Virus from U.K. Peas","display_name":"Comparison of Sequencing Methods for Obtaining a Whole Genome of Pea Necrotic Yellow Dwarf Virus from U.K. Peas","publication_year":2023,"publication_date":"2023-05-10","ids":{"openalex":"https://openalex.org/W4382196038","doi":"https://doi.org/10.1094/phytofr-01-23-0003-r"},"language":"en","primary_location":{"id":"doi:10.1094/phytofr-01-23-0003-r","doi":"https://doi.org/10.1094/phytofr-01-23-0003-r","is_oa":true,"landing_page_url":"https://doi.org/10.1094/phytofr-01-23-0003-r","pdf_url":null,"source":{"id":"https://openalex.org/S4210170512","display_name":"PhytoFrontiers\u2122","issn_l":"2690-5442","issn":["2690-5442"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","norway-1","oarl"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PhytoFrontiers\u2122","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1094/phytofr-01-23-0003-r","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043596892","display_name":"A. Fowkes","orcid":"https://orcid.org/0000-0001-7918-441X","observed_orcids":["https://orcid.org/0000-0001-7918-441X"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. R. Fowkes","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":"https://orcid.org/0000-0001-7918-441X","affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":null,"display_name":"S. Duffy","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210104980","display_name":"Processors and Growers Research Organisation","ror":"https://ror.org/01qtabf22","country_code":"GB","type":"other","lineage":["https://openalex.org/I4210104980"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Duffy","raw_affiliation_strings":["PGRO, The Research Station, Great North Road, Thornhaugh, Peterborough, PE8 6HJ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PGRO, The Research Station, Great North Road, Thornhaugh, Peterborough, PE8 6HJ, U.K","institution_ids":["https://openalex.org/I4210104980"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039638630","display_name":"Sam McGreig","orcid":"https://orcid.org/0000-0003-4310-569X","observed_orcids":["https://orcid.org/0000-0003-4310-569X"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. McGreig","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062621799","display_name":"In\u00e9s V\u00e1zquez-Iglesias","orcid":"https://orcid.org/0000-0003-1258-1810","observed_orcids":["https://orcid.org/0000-0003-1258-1810"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"I. Vazquez-Iglesias","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019331478","display_name":"Kinda Alraiss","orcid":"https://orcid.org/0000-0002-8110-0534","observed_orcids":["https://orcid.org/0000-0002-8110-0534"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"K. Alraiss","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062502783","display_name":"Ben Barrett","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"B. Barrett","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048827740","display_name":"Christine M. Conyers","orcid":"https://orcid.org/0000-0001-7084-2578","observed_orcids":["https://orcid.org/0000-0001-7084-2578"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"C. Conyers","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029002109","display_name":"G. R. Barrie Webster","orcid":"https://orcid.org/0000-0002-5608-9636","observed_orcids":["https://orcid.org/0000-0002-5608-9636"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G. Webster","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062132292","display_name":"Richard Ward","orcid":"https://orcid.org/0000-0002-7085-025X","observed_orcids":["https://orcid.org/0000-0002-7085-025X"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"R. Ward","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086607701","display_name":"Kiera Chisnall","orcid":"https://orcid.org/0000-0001-6124-5261","observed_orcids":["https://orcid.org/0000-0001-6124-5261"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"K. Chisnall","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017463996","display_name":"Mary Mynett","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. Mynett","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042404772","display_name":"Ian P. Adams","orcid":"https://orcid.org/0000-0002-5589-6460","observed_orcids":["https://orcid.org/0000-0002-5589-6460"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"I. P. Adams","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109979015","display_name":"Roy Macarthur","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"R. Macarthur","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]},{"author_position":"middle","author":{"id":null,"display_name":"B. Howard","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210104980","display_name":"Processors and Growers Research Organisation","ror":"https://ror.org/01qtabf22","country_code":"GB","type":"other","lineage":["https://openalex.org/I4210104980"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"B. Howard","raw_affiliation_strings":["PGRO, The Research Station, Great North Road, Thornhaugh, Peterborough, PE8 6HJ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PGRO, The Research Station, Great North Road, Thornhaugh, Peterborough, PE8 6HJ, U.K","institution_ids":["https://openalex.org/I4210104980"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081148533","display_name":"Adrian Fox","orcid":"https://orcid.org/0000-0003-1280-1836","observed_orcids":["https://orcid.org/0000-0003-1280-1836"]},"institutions":[{"id":"https://openalex.org/I1287240670","display_name":"Fera Science (United Kingdom)","ror":"https://ror.org/05299tt38","country_code":"GB","type":"company","lineage":["https://openalex.org/I1287240670","https://openalex.org/I1326803253","https://openalex.org/I2802373619","https://openalex.org/I4210137385"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. Fox","raw_affiliation_strings":["Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fera Science Ltd., Sand Hutton, York, YO41 1LZ, U.K","institution_ids":["https://openalex.org/I1287240670"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9471,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.72240073,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"3","issue":"4","first_page":"795","last_page":"801"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nanovirus","display_name":"nanovirus","score":0.7049999833106995},{"id":"https://openalex.org/keywords/rolling-circle-amplification","display_name":"rolling circle amplification","score":0.878000020980835},{"id":"https://openalex.org/keywords/oxford-nanopore-minion","display_name":"Oxford Nanopore MinION","score":0.8700000047683716},{"id":"https://openalex.org/keywords/sequencing-method-comparison","display_name":"sequencing method comparison","score":0.5899999737739563},{"id":"https://openalex.org/keywords/virus-prevalence","display_name":"viral prevalence","score":0.3779999911785126}],"concepts":[{"id":"https://openalex.org/C2779927696","wikidata":"https://www.wikidata.org/wiki/Q6865654","display_name":"Minion","level":5,"score":0.9310452938079834},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7621058821678162},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.6585444211959839},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6426197290420532},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.6034108996391296},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5789859890937805},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.5700433850288391},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5040668249130249},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.48019230365753174},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4776933491230011},{"id":"https://openalex.org/C109110057","wikidata":"https://www.wikidata.org/wiki/Q1495434","display_name":"Plant virus","level":3,"score":0.4380406439304352},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4308880865573883},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4297240376472473},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.24397829174995422},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18836727738380432}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1094/phytofr-01-23-0003-r","doi":"https://doi.org/10.1094/phytofr-01-23-0003-r","is_oa":true,"landing_page_url":"https://doi.org/10.1094/phytofr-01-23-0003-r","pdf_url":null,"source":{"id":"https://openalex.org/S4210170512","display_name":"PhytoFrontiers\u2122","issn_l":"2690-5442","issn":["2690-5442"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","norway-1","oarl"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PhytoFrontiers\u2122","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:3d7ead55d47a41b19948abc84aec1b74","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/3d7ead55d47a41b19948abc84aec1b74","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PhytoFrontiers, Vol 3, Iss 4, Pp 795-801 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1094/phytofr-01-23-0003-r","doi":"https://doi.org/10.1094/phytofr-01-23-0003-r","is_oa":true,"landing_page_url":"https://doi.org/10.1094/phytofr-01-23-0003-r","pdf_url":null,"source":{"id":"https://openalex.org/S4210170512","display_name":"PhytoFrontiers\u2122","issn_l":"2690-5442","issn":["2690-5442"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","norway-1","oarl"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PhytoFrontiers\u2122","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.6875,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320312261","display_name":"Agricultural and Horticultural Development Board","ror":"https://ror.org/010gf7388"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1983195949","https://openalex.org/W2041103395","https://openalex.org/W2063812637","https://openalex.org/W2114580048","https://openalex.org/W2117106261","https://openalex.org/W2142678478","https://openalex.org/W2165390680","https://openalex.org/W2563239801","https://openalex.org/W2599417231","https://openalex.org/W2610847313","https://openalex.org/W2618493029","https://openalex.org/W2763816339","https://openalex.org/W2784788330","https://openalex.org/W2789843538","https://openalex.org/W2790514610","https://openalex.org/W2798041089","https://openalex.org/W2804134371","https://openalex.org/W2889900726","https://openalex.org/W2900616251","https://openalex.org/W2905160643","https://openalex.org/W2910389705","https://openalex.org/W2922233944","https://openalex.org/W3010772070","https://openalex.org/W3090372807","https://openalex.org/W3099514330","https://openalex.org/W3105466883","https://openalex.org/W3121375113","https://openalex.org/W3176682519","https://openalex.org/W4200109070","https://openalex.org/W4200477218","https://openalex.org/W4210963545","https://openalex.org/W4212972500","https://openalex.org/W4280510551","https://openalex.org/W4283382256","https://openalex.org/W4289261963","https://openalex.org/W4292454808","https://openalex.org/W4297723515","https://openalex.org/W4319333131"],"related_works":["https://openalex.org/W2798041089","https://openalex.org/W2610847313","https://openalex.org/W4200477218","https://openalex.org/W2947326124","https://openalex.org/W3019852479","https://openalex.org/W2563239801","https://openalex.org/W7132601188","https://openalex.org/W2922679954","https://openalex.org/W2607736692","https://openalex.org/W2974777091"],"abstract_inverted_index":{"During":[0],"a":[1,12,96,116],"project":[2],"investigating":[3],"pea":[4,20,33,37,41,47],"viruses":[5],"in":[6,17,98],"the":[7,81,90,99,105,170,219,240],"United":[8,100],"Kingdom":[9],"and":[10,51,72,77,95,137,148,205,207],"developing":[11],"workflow":[13],"for":[14,197],"high-throughput":[15],"sequencing":[16,66,79,161],"crop":[18],"surveillance,":[19],"necrotic":[21],"yellow":[22],"dwarf":[23],"virus":[24,44],"(PNYDV)":[25],"was":[26,200],"identified":[27],"at":[28],"one":[29],"site,":[30],"along":[31],"with":[32,150],"enation":[34,38,42],"mosaic":[35,39,43,49],"virus-1,":[36],"virus-2,":[40],"satellite":[45],"RNA,":[46],"seedborne":[48],"virus,":[50],"turnip":[52],"yellows":[53],"virus.":[54],"Following":[55],"an":[56,64,166,234],"initial":[57,167],"finding":[58],"of":[59,93,104,169,173,221],"small":[60],"PNYDV":[61,83],"contigs":[62],"by":[63,75,108,145,203,209],"RNA":[65],"protocol":[67],"on":[68],"MiSeq":[69,136],"(Illumina),":[70],"confirmation":[71,128],"prevalence":[73,84],"testing":[74,129],"PCR":[76,109],"Sanger":[78],"determined":[80],"average":[82],"to":[85,127,164,217],"be":[86,191],"3%.":[87],"This":[88,125,232],"is":[89,215,233],"first":[91],"report":[92],"PNYDV,":[94],"nanovirus,":[97],"Kingdom.":[101],"Initial":[102],"characterization":[103],"octopartite":[106],"genome":[107],"revealed":[110],"that":[111,119],"component":[112],"DNA":[113,198],"N":[114,199],"had":[115],"truncated":[117,195],"sequence":[118,196],"differed":[120],"from":[121,160],"those":[122],"previously":[123],"reported.":[124],"led":[126],"using":[130],"rolling":[131],"circle":[132],"amplification":[133],"(RCA)":[134],"into":[135,179],"then":[138],"MinION":[139,151],"(Oxford":[140],"Nanopore).":[141],"Sequences":[142],"were":[143,162],"obtained":[144,159],"both":[146],"RCA-MiSeq":[147,204],"RCA-MinION,":[149],"producing":[152],"more":[153],"complete":[154],"genomes":[155],"than":[156],"RCA-MiSeq.":[157],"Data":[158],"used":[163,192],"provide":[165],"estimation":[168],"genomic":[171],"formula":[172],"PNYDV.":[174],"Previous":[175],"work":[176,214],"has":[177],"looked":[178],"comparing":[180],"each":[181],"method;":[182],"however,":[183],"this":[184,222],"study":[185],"shows":[186],"how":[187],"these":[188],"methods":[189],"can":[190],"together.":[193],"The":[194,230],"also":[201],"found":[202],"RCA-MinION":[206],"confirmed":[208],"specific":[210],"primers,":[211],"but":[212],"further":[213],"required":[216],"understand":[218],"impact":[220],"truncation.":[223],"[Formula:":[224],"see":[225],"text]":[226],"Copyright":[227],"\u00a9":[228],"2023":[229],"Author(s).":[231],"open":[235],"access":[236],"article":[237],"distributed":[238],"under":[239],"CC":[241],"BY-NC-ND":[242],"4.0":[243],"International":[244],"license":[245],".":[246]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2023-06-28T00:00:00"}
