{"id":"https://openalex.org/W4381716368","doi":null,"title":"A Query Engine for Self-controlled Case Series, with an application to COVID-19 EHR data.","display_name":"A Query Engine for Self-controlled Case Series, with an application to COVID-19 EHR data.","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4381716368","pmid":"https://pubmed.ncbi.nlm.nih.gov/37350916","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10283100"},"language":"en","primary_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10283100","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10283100","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10283100/pdf/2162.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Jt Summits Transl Sci Proc","raw_type":"Text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10283100/pdf/2162.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100633216","display_name":"Xiaojin Li","orcid":"https://orcid.org/0000-0003-2273-186X","observed_orcids":["https://orcid.org/0000-0003-2273-186X"]},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaojin Li","raw_affiliation_strings":["McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX","School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101595934","display_name":"Yan Huang","orcid":"https://orcid.org/0000-0002-6578-2379","observed_orcids":["https://orcid.org/0000-0002-6578-2379","https://orcid.org/0009-0001-3922-0663","https://orcid.org/0000-0003-3833-9248"]},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Huang","raw_affiliation_strings":["McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX","Texas Institute for Restorative Neurotechnologies, The University of Texas Health Science Center at Houston, Houston, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Texas Institute for Restorative Neurotechnologies, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049834185","display_name":"Licong Cui","orcid":"https://orcid.org/0000-0001-5549-8780","observed_orcids":["https://orcid.org/0000-0001-5549-8780"]},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Licong Cui","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX","Texas Institute for Restorative Neurotechnologies, The University of Texas Health Science Center at Houston, Houston, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Texas Institute for Restorative Neurotechnologies, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392487","display_name":"Guo\u2010Qiang Zhang","orcid":"https://orcid.org/0000-0002-3663-1109","observed_orcids":["https://orcid.org/0000-0002-3663-1109","https://orcid.org/0000-0002-8142-4117"]},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guo-Qiang Zhang","raw_affiliation_strings":["McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX","School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX","Texas Institute for Restorative Neurotechnologies, The University of Texas Health Science Center at Houston, Houston, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Texas Institute for Restorative Neurotechnologies, The University of Texas Health Science Center at Houston, Houston, TX","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I919571938"],"apc_list":null,"apc_paid":null,"fwci":0.1402,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.39157236,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":95},"biblio":{"volume":"2023","issue":null,"first_page":"350","last_page":"359"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.23499999940395355,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.23499999940395355,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.20759999752044678,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.19419999420642853,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/self-controlled-case-series","display_name":"self-controlled case series","score":0.9980000257492065},{"id":"https://openalex.org/keywords/query-engine","display_name":"query engine","score":0.9760000109672546},{"id":"https://openalex.org/keywords/electronic-health-records","display_name":"electronic health records","score":0.8399999737739563},{"id":"https://openalex.org/keywords/covid-19","display_name":"COVID-19 pandemic","score":0.9660000205039978},{"id":"https://openalex.org/keywords/epidemiological-study-design","display_name":"epidemiological study design","score":0.6660000085830688}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7786550521850586},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.628880500793457},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5313891172409058},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5311504602432251},{"id":"https://openalex.org/C33499554","wikidata":"https://www.wikidata.org/wiki/Q1417134","display_name":"Dashboard","level":2,"score":0.516493558883667},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47944870591163635},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.47569262981414795},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4723083972930908},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3283981680870056},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12376150488853455},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:pubmedcentral.nih.gov:10283100","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10283100","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10283100/pdf/2162.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Jt Summits Transl Sci Proc","raw_type":"Text"},{"id":"pmid:37350916","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37350916","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science","raw_type":"Journal Article"},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1136","doi":null,"is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/134","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10283100","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10283100","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10283100/pdf/2162.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Jt Summits Transl Sci Proc","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.9391000270843506}],"study_designs":[],"awards":[{"id":"https://openalex.org/G2782411164","display_name":"Biomedical Terminology Quality Assurance for Enhancing Clinical Queries over Electronic Health Records","funder_award_id":"R01LM013335","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8623505872","display_name":"CAREER: Advancing the Role of Ontologies for Data Science in Biomedicine","funder_award_id":"2047001","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G9000889280","display_name":"SCH: Neurophysiological AI-Ready Data Resource","funder_award_id":"R01NS126690","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4381716368.pdf","grobid_xml":"https://content.openalex.org/works/W4381716368.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W124587054","https://openalex.org/W1894966336","https://openalex.org/W1987811240","https://openalex.org/W1991473061","https://openalex.org/W1993888216","https://openalex.org/W2013741138","https://openalex.org/W2026962900","https://openalex.org/W2034898504","https://openalex.org/W2058837954","https://openalex.org/W2104026855","https://openalex.org/W2122565800","https://openalex.org/W2135415614","https://openalex.org/W2138399673","https://openalex.org/W2139728727","https://openalex.org/W2140302476","https://openalex.org/W2326455719","https://openalex.org/W2511153099","https://openalex.org/W2519433651","https://openalex.org/W2596248142","https://openalex.org/W2612374874","https://openalex.org/W2614071050","https://openalex.org/W2923757114","https://openalex.org/W2981864773","https://openalex.org/W3012912789","https://openalex.org/W3023558588","https://openalex.org/W3026032531","https://openalex.org/W3036141416","https://openalex.org/W3042832109","https://openalex.org/W3082031349","https://openalex.org/W3093404624","https://openalex.org/W3106757690","https://openalex.org/W3116477623","https://openalex.org/W3149609202","https://openalex.org/W3185635616","https://openalex.org/W4200603410","https://openalex.org/W4210563071","https://openalex.org/W4210885547","https://openalex.org/W4289732269","https://openalex.org/W4368359153"],"related_works":["https://openalex.org/W7131191091","https://openalex.org/W4413640283","https://openalex.org/W7221062439","https://openalex.org/W2519433651","https://openalex.org/W7165557752","https://openalex.org/W4249695431","https://openalex.org/W2419276211","https://openalex.org/W4281739168","https://openalex.org/W7003935915","https://openalex.org/W4377091913"],"abstract_inverted_index":{"Self-controlled":[0],"case":[1,72],"series":[2,73],"(SCCS)":[3],"is":[4,40],"a":[5,56,75,112,129],"statistical":[6,134],"method":[7],"in":[8,36],"epidemiological":[9,174],"study":[10],"design":[11],"that":[12,115],"uses":[13],"individuals":[14,25],"as":[15],"their":[16],"own":[17],"controls,":[18],"with":[19,111,147],"comparisons":[20],"made":[21],"within":[22],"the":[23,86,90,100,104,169],"same":[24],"at":[26],"different":[27],"time":[28],"points":[29],"of":[30,70,85,106,131],"observation.":[31],"SCCS":[32],"has":[33],"been":[34],"applied":[35],"settings":[37],"where":[38],"it":[39,66],"difficult":[41],"to":[42,67,99,119,144,167],"identify":[43],"comparison":[44],"or":[45,133],"control":[46],"groups.":[47],"To":[48],"provide":[49],"computational":[50],"support":[51],"for":[52,163,171],"SCCS,":[53],"we":[54],"introduce":[55],"query":[57,96],"engine":[58],"called":[59],"Self-Controlled":[60],"Case":[61],"Query":[62],"(SCCQ)":[63],"and":[64,123,138,157,173],"use":[65],"extract":[68],"cohorts":[69],"self-controlled":[71],"from":[74],"large-scale":[76],"COVID-19":[77,142],"Electronic":[78],"Health":[79],"Records":[80],"(EHR)":[81],"dataset.":[82],"Visual":[83],"summary":[84],"queried":[87],"population":[88],"through":[89],"R-Shiny":[91],"visualization":[92,125,159],"framework":[93],"offers":[94],"SCCQ's":[95],"result":[97],"dashboard":[98],"researcher.":[101],"SCCQ":[102],"allows":[103],"export":[105],"query-generated":[107],"raw":[108],"data":[109,155,166],"files":[110],"portable":[113],"format":[114],"researchers":[116],"can":[117,160],"extend":[118],"create":[120],"more":[121],"intricate":[122],"robust":[124],"capabilities":[126],"without":[127],"needing":[128],"high-level":[130],"technical":[132],"background.":[135],"Our":[136],"validation":[137],"evaluation":[139],"experiments":[140],"uncovered":[141],"outcomes":[143],"be":[145,161],"consistent":[146],"existing":[148],"research":[149],"findings.":[150],"With":[151],"SCCQ,":[152],"cohort":[153],"exploration,":[154],"extraction,":[156],"information":[158],"provided":[162],"structured":[164],"EHR":[165],"lower":[168],"barrier":[170],"clinical":[172],"research.":[175]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2026-10-29T09:56:32.521200","created_date":"2023-06-24T00:00:00"}
