{"id":"https://openalex.org/W4380086795","doi":"https://doi.org/10.7717/peerj.15383","title":"Characterization of prophages in bacterial genomes from the honey bee ( Apis mellifera) gut microbiome","display_name":"Characterization of prophages in bacterial genomes from the honey bee ( Apis mellifera) gut microbiome","publication_year":2023,"publication_date":"2023-06-09","ids":{"openalex":"https://openalex.org/W4380086795","doi":"https://doi.org/10.7717/peerj.15383","pmid":"https://pubmed.ncbi.nlm.nih.gov/37312882","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10259446"},"language":"en","primary_location":{"id":"doi:10.7717/peerj.15383","doi":"https://doi.org/10.7717/peerj.15383","is_oa":true,"landing_page_url":"https://doi.org/10.7717/peerj.15383","pdf_url":"https://peerj.com/articles/15383.pdf","source":{"id":"https://openalex.org/S1983995261","display_name":"PeerJ","issn_l":"2167-8359","issn":["2167-8359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320104","host_organization_name":"PeerJ, Inc.","host_organization_lineage":["https://openalex.org/P4310320104"],"host_organization_lineage_names":["PeerJ, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://peerj.com/articles/15383.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012529651","display_name":"Emma K. Bueren","orcid":"https://orcid.org/0000-0002-5738-3917","observed_orcids":["https://orcid.org/0000-0002-5738-3917"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Emma K. Bueren","raw_affiliation_strings":["Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004178677","display_name":"Alaina Weinheimer","orcid":"https://orcid.org/0000-0002-6066-0591","observed_orcids":["https://orcid.org/0000-0002-6066-0591"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alaina R. Weinheimer","raw_affiliation_strings":["Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064545135","display_name":"Frank O. Aylward","orcid":"https://orcid.org/0000-0002-1279-4050","observed_orcids":["https://orcid.org/0000-0002-1279-4050"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frank O. Aylward","raw_affiliation_strings":["Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004398630","display_name":"Bryan Boen Hsu","orcid":"https://orcid.org/0000-0002-8219-1124","observed_orcids":["https://orcid.org/0000-0002-8219-1124"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan B. Hsu","raw_affiliation_strings":["Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029471060","display_name":"David C. Haak","orcid":"https://orcid.org/0000-0002-3692-3152","observed_orcids":["https://orcid.org/0000-0002-3692-3152"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David C. Haak","raw_affiliation_strings":["School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042153897","display_name":"Lisa K. Belden","orcid":"https://orcid.org/0000-0002-3514-3920","observed_orcids":["https://orcid.org/0000-0002-3514-3920"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lisa K. Belden","raw_affiliation_strings":["Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5012529651"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":1395,"currency":"USD","value_usd":1395},"apc_paid":{"value":1395,"currency":"USD","value_usd":1395},"fwci":0.9577,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.71131222,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"11","issue":null,"first_page":"e15383","last_page":"e15383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11641","display_name":"Insect and Pesticide Research","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prophages","display_name":"prophages","score":0.9879999756813049},{"id":"https://openalex.org/keywords/honey-bee-gut-microbiome","display_name":"honey bee gut microbiome","score":0.921999990940094},{"id":"https://openalex.org/keywords/apis-mellifera","display_name":"Apis mellifera","score":0.9950000047683716},{"id":"https://openalex.org/keywords/temperate-phages","display_name":"temperate phages","score":0.9869999885559082},{"id":"https://openalex.org/keywords/snodgrassella-alvi","display_name":"Snodgrassella alvi","score":0.9120000004768372},{"id":"https://openalex.org/keywords/gilliamella-apicola","display_name":"Gilliamella apicola","score":1.0},{"id":"https://openalex.org/keywords/paenibacillus-larvae","display_name":"Paenibacillus larvae","score":0.9980000257492065},{"id":"https://openalex.org/keywords/melissococcus-plutonius","display_name":"Melissococcus plutonius","score":0.9980000257492065},{"id":"https://openalex.org/keywords/carbohydrate-metabolism","display_name":"carbohydrate metabolism","score":0.7369999885559082},{"id":"https://openalex.org/keywords/host-specificity","display_name":"host specificity","score":0.44699999690055847},{"id":"https://openalex.org/keywords/gut-microbiota","display_name":"gut microbiota","score":0.4189999997615814}],"concepts":[{"id":"https://openalex.org/C73445445","wikidata":"https://www.wikidata.org/wiki/Q1712327","display_name":"Prophage","level":5,"score":0.996591329574585},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7990509271621704},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6786531209945679},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.6052313446998596},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5363726615905762},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5013675689697266},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4816373884677887},{"id":"https://openalex.org/C197480550","wikidata":"https://www.wikidata.org/wiki/Q1258111","display_name":"Temperateness","level":5,"score":0.43237045407295227},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.3462064266204834},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3104773163795471},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.22219157218933105}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001516","descriptor_name":"Bees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058507","descriptor_name":"Host Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.7717/peerj.15383","doi":"https://doi.org/10.7717/peerj.15383","is_oa":true,"landing_page_url":"https://doi.org/10.7717/peerj.15383","pdf_url":"https://peerj.com/articles/15383.pdf","source":{"id":"https://openalex.org/S1983995261","display_name":"PeerJ","issn_l":"2167-8359","issn":["2167-8359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320104","host_organization_name":"PeerJ, Inc.","host_organization_lineage":["https://openalex.org/P4310320104"],"host_organization_lineage_names":["PeerJ, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10259446","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10259446","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10259446/pdf/peerj-11-15383.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ","raw_type":"Text"},{"id":"pmid:37312882","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37312882","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:4cdef1a174d04273b5e8646dd6e4d159","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/4cdef1a174d04273b5e8646dd6e4d159","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PeerJ, Vol 11, p e15383 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.7717/peerj.15383","doi":"https://doi.org/10.7717/peerj.15383","is_oa":true,"landing_page_url":"https://doi.org/10.7717/peerj.15383","pdf_url":"https://peerj.com/articles/15383.pdf","source":{"id":"https://openalex.org/S1983995261","display_name":"PeerJ","issn_l":"2167-8359","issn":["2167-8359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320104","host_organization_name":"PeerJ, Inc.","host_organization_lineage":["https://openalex.org/P4310320104"],"host_organization_lineage_names":["PeerJ, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G7472824331","display_name":"Collarborative Research:  A systems approach to understanding signaling networks in host-microbiome-parasite interactions","funder_award_id":"1817736","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4380086795.pdf","grobid_xml":"https://content.openalex.org/works/W4380086795.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1550275690","https://openalex.org/W1556260817","https://openalex.org/W1762161369","https://openalex.org/W1921607560","https://openalex.org/W1981244178","https://openalex.org/W1996718064","https://openalex.org/W2004413279","https://openalex.org/W2006612734","https://openalex.org/W2013389783","https://openalex.org/W2046861479","https://openalex.org/W2050783903","https://openalex.org/W2070068738","https://openalex.org/W2087952993","https://openalex.org/W2096093282","https://openalex.org/W2097146199","https://openalex.org/W2098436674","https://openalex.org/W2099539515","https://openalex.org/W2100363512","https://openalex.org/W2106119366","https://openalex.org/W2114061891","https://openalex.org/W2138122982","https://openalex.org/W2143834603","https://openalex.org/W2159675211","https://openalex.org/W2225079386","https://openalex.org/W2294922595","https://openalex.org/W2300639547","https://openalex.org/W2306404099","https://openalex.org/W2311088209","https://openalex.org/W2345386454","https://openalex.org/W2345791363","https://openalex.org/W2417593230","https://openalex.org/W2468409351","https://openalex.org/W2509910846","https://openalex.org/W2521169042","https://openalex.org/W2588121873","https://openalex.org/W2610784236","https://openalex.org/W2714107744","https://openalex.org/W2731487953","https://openalex.org/W2736920791","https://openalex.org/W2768384432","https://openalex.org/W2790367768","https://openalex.org/W2883351393","https://openalex.org/W2900629010","https://openalex.org/W2904384071","https://openalex.org/W2914317179","https://openalex.org/W2943223175","https://openalex.org/W2948347995","https://openalex.org/W2997278774","https://openalex.org/W3011976166","https://openalex.org/W3017701119","https://openalex.org/W3033129278","https://openalex.org/W3049038269","https://openalex.org/W3118048495","https://openalex.org/W3127656915","https://openalex.org/W3132431828","https://openalex.org/W3132582992","https://openalex.org/W3134954922","https://openalex.org/W3138297312","https://openalex.org/W3165334740","https://openalex.org/W3189053267","https://openalex.org/W3202488381","https://openalex.org/W4220924660","https://openalex.org/W4253139943","https://openalex.org/W4254687493","https://openalex.org/W4285589748","https://openalex.org/W4307770926","https://openalex.org/W6968675647","https://openalex.org/W6998306979"],"related_works":["https://openalex.org/W7160707541","https://openalex.org/W2013389783","https://openalex.org/W7036193730","https://openalex.org/W3202209027","https://openalex.org/W3025703685","https://openalex.org/W3011976166","https://openalex.org/W1965117546","https://openalex.org/W7223494761","https://openalex.org/W1996718064","https://openalex.org/W3017701119"],"abstract_inverted_index":{"The":[0,166],"gut":[1,84,104,241,265,277],"of":[2,23,77,91,108,123,175,193,217,224,273,284],"the":[3,29,81,92,106,141,156,187,194,215,225,230,238,262,269,274,285],"European":[4],"honey":[5,82,87,239,263,275],"bee":[6,83,88,240,264,276],"(":[7],"Apis":[8],"mellifera)":[9],"possesses":[10],"a":[11,171],"relatively":[12],"simple":[13],"bacterial":[14,30,41,125,204,219,247,286],"community,":[15,287],"but":[16],"little":[17],"is":[18],"known":[19],"about":[20],"its":[21],"community":[22],"prophages":[24,33,73,109,144,176,209,236,260],"(temperate":[25],"bacteriophages":[26],"integrated":[27],"into":[28],"genome).":[31],"Although":[32],"may":[34,266],"eventually":[35],"begin":[36],"replicating":[37],"and":[38,65,85,117,137,180,271,279,291],"kill":[39],"their":[40,50,203,246],"hosts,":[42,248],"they":[43],"can":[44],"also":[45],"sometimes":[46],"be":[47],"beneficial":[48],"for":[49,66],"hosts":[51],"by":[52],"conferring":[53],"protection":[54],"from":[55,113,131],"other":[56],"phage":[57],"infections":[58],"or":[59,191],"encoding":[60],"genes":[61,227,251],"in":[62,74,80,237,252],"metabolic":[63],"pathways":[64],"toxins.":[67],"In":[68],"this":[69,256],"study,":[70],"we":[71],"explored":[72],"17":[75],"species":[76],"core":[78,103,195],"bacteria":[79],"two":[86],"pathogens.":[89],"Out":[90],"181":[93],"genomes":[94],"examined,":[95],"431":[96],"putative":[97],"prophage":[98,118,158,181,231],"regions":[99,232],"were":[100,199,210],"predicted.":[101],"Among":[102],"bacteria,":[105],"number":[107,174],"per":[110,145],"genome":[111,126,146],"ranged":[112,130],"zero":[114],"to":[115,128,133,202,214,245,268],"seven":[116],"composition":[119,159,182],"(the":[120],"compositional":[121],"percentage":[122],"each":[124],"attributable":[127],"prophages)":[129],"0":[132],"7%.":[134],"Snodgrassella":[135],"alvi":[136,290],"Gilliamella":[138],"apicola":[139,293],"had":[140,170],"highest":[142,157],"median":[143,173],"(3.0":[147],"\u00b1":[148,151,161,164,178,184],"1.46;":[149],"3.0":[150],"1.59),":[152],"as":[153,155,250],"well":[154],"(2.58%":[160],"1.4;":[162],"3.0%":[163],"1.59).":[165],"pathogen":[167,188],"Paenibacillus":[168],"larvae":[169],"higher":[172],"(8.0":[177],"5.33)":[179],"(6.40%":[183],"3.08)":[185],"than":[186],"Melissococcus":[189],"plutonius":[190],"any":[192],"bacteria.":[196],"Prophage":[197],"populations":[198],"highly":[200],"specific":[201,282],"host":[205],"species,":[206],"suggesting":[207],"most":[208],"acquired":[211],"recently":[212],"relative":[213],"divergence":[216],"these":[218],"groups.":[220],"Furthermore,":[221],"functional":[222],"annotation":[223],"predicted":[226],"encoded":[228],"within":[229,261],"indicates":[233],"that":[234,259],"some":[235],"encode":[242],"additional":[243],"benefits":[244],"such":[249],"carbohydrate":[253],"metabolism.":[254],"Collectively,":[255],"survey":[257],"suggests":[258],"contribute":[267],"maintenance":[270],"stability":[272],"microbiome":[278],"potentially":[280],"modulate":[281],"members":[283],"particularly":[288],"S.":[289],"G.":[292],".":[294]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":2}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2023-06-10T00:00:00"}