{"id":"https://openalex.org/W4378651302","doi":"https://doi.org/10.3390/plants12112139","title":"Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests","display_name":"Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests","publication_year":2023,"publication_date":"2023-05-29","ids":{"openalex":"https://openalex.org/W4378651302","doi":"https://doi.org/10.3390/plants12112139","pmid":"https://pubmed.ncbi.nlm.nih.gov/37299118","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10255714"},"language":"en","primary_location":{"id":"doi:10.3390/plants12112139","doi":"https://doi.org/10.3390/plants12112139","is_oa":true,"landing_page_url":"https://doi.org/10.3390/plants12112139","pdf_url":"https://www.mdpi.com/2223-7747/12/11/2139/pdf?version=1685342006","source":{"id":"https://openalex.org/S4210230202","display_name":"Plants","issn_l":"2223-7747","issn":["2223-7747"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plants","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2223-7747/12/11/2139/pdf?version=1685342006","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059191462","display_name":"Annelies Haegeman","orcid":"https://orcid.org/0000-0002-8192-5368","observed_orcids":["https://orcid.org/0000-0002-8192-5368"]},"institutions":[{"id":"https://openalex.org/I4210145253","display_name":"Instituut voor Landbouw en Visserijonderzoek","ror":"https://ror.org/05cjt1n05","country_code":"BE","type":"facility","lineage":["https://openalex.org/I4210145253"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Annelies Haegeman","raw_affiliation_strings":["Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-8192-5368","affiliations":[{"raw_affiliation_string":"Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium","institution_ids":["https://openalex.org/I4210145253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013075984","display_name":"Yoika Foucart","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210145253","display_name":"Instituut voor Landbouw en Visserijonderzoek","ror":"https://ror.org/05cjt1n05","country_code":"BE","type":"facility","lineage":["https://openalex.org/I4210145253"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yoika Foucart","raw_affiliation_strings":["Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium","institution_ids":["https://openalex.org/I4210145253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050259630","display_name":"Kris De Jonghe","orcid":"https://orcid.org/0000-0003-1763-5654","observed_orcids":["https://orcid.org/0000-0003-1763-5654"]},"institutions":[{"id":"https://openalex.org/I4210145253","display_name":"Instituut voor Landbouw en Visserijonderzoek","ror":"https://ror.org/05cjt1n05","country_code":"BE","type":"facility","lineage":["https://openalex.org/I4210145253"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Kris De Jonghe","raw_affiliation_strings":["Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium"],"raw_orcid":"https://orcid.org/0000-0003-1763-5654","affiliations":[{"raw_affiliation_string":"Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium","institution_ids":["https://openalex.org/I4210145253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072271777","display_name":"Thomas Goedefroit","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210145253","display_name":"Instituut voor Landbouw en Visserijonderzoek","ror":"https://ror.org/05cjt1n05","country_code":"BE","type":"facility","lineage":["https://openalex.org/I4210145253"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Thomas Goedefroit","raw_affiliation_strings":["Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9820 Merelbeke, Belgium","institution_ids":["https://openalex.org/I4210145253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000228983","display_name":"Maher Al Rwahnih","orcid":"https://orcid.org/0000-0003-1589-9234","observed_orcids":["https://orcid.org/0000-0003-1589-9234"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maher Al Rwahnih","raw_affiliation_strings":["Foundation Plant Services, Department of Plant Pathology, University of California, Davis, CA 95616, USA"],"raw_orcid":"https://orcid.org/0000-0003-1589-9234","affiliations":[{"raw_affiliation_string":"Foundation Plant Services, Department of Plant Pathology, University of California, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085003042","display_name":"Neil Boonham","orcid":"https://orcid.org/0000-0002-8886-5708","observed_orcids":["https://orcid.org/0000-0002-8886-5708"]},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil Boonham","raw_affiliation_strings":["School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036982385","display_name":"Thierry Candresse","orcid":"https://orcid.org/0000-0001-9757-1835","observed_orcids":["https://orcid.org/0000-0001-9757-1835"]},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210089449","display_name":"Biologie du Fruit et Pathologie","ror":"https://ror.org/00ccpdp17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I4210088668","https://openalex.org/I4210089449"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thierry Candresse","raw_affiliation_strings":["UMR 1332 Biologie du Fruit et Pathologie, Institut National de Recherche pour l\u2019Agriculture, l\u2019Alimentation et l\u2019Environnement (INRAE), Universit\u00e9 de Bordeaux, 33882 Villenave-d\u2019Ornon, France"],"raw_orcid":"https://orcid.org/0000-0001-9757-1835","affiliations":[{"raw_affiliation_string":"UMR 1332 Biologie du Fruit et Pathologie, Institut National de Recherche pour l\u2019Agriculture, l\u2019Alimentation et l\u2019Environnement (INRAE), Universit\u00e9 de Bordeaux, 33882 Villenave-d\u2019Ornon, France","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I4210088668","https://openalex.org/I4210089449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069550731","display_name":"Yahya Z. A. Gaafar","orcid":"https://orcid.org/0000-0002-7833-1542","observed_orcids":["https://orcid.org/0000-0002-7833-1542"]},"institutions":[{"id":"https://openalex.org/I1307613440","display_name":"Canadian Food Inspection Agency","ror":"https://ror.org/00qxr8t08","country_code":"CA","type":"government","lineage":["https://openalex.org/I1307613440"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yahya Z. A. Gaafar","raw_affiliation_strings":["Centre for Plant Health, Canadian Food Inspection Agency, 8801 East Saanich Road, North Saanich, BC V8L 1H3, Canada"],"raw_orcid":"https://orcid.org/0000-0002-7833-1542","affiliations":[{"raw_affiliation_string":"Centre for Plant Health, Canadian Food Inspection Agency, 8801 East Saanich Road, North Saanich, BC V8L 1H3, Canada","institution_ids":["https://openalex.org/I1307613440"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083689051","display_name":"Oscar P. Hurtado\u2010Gonzales","orcid":"https://orcid.org/0000-0002-9561-7016","observed_orcids":["https://orcid.org/0000-0002-9561-7016"]},"institutions":[{"id":"https://openalex.org/I1288380561","display_name":"Animal and Plant Health Inspection Service","ror":"https://ror.org/0599wfz09","country_code":"US","type":"government","lineage":["https://openalex.org/I1288380561","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oscar P. Hurtado-Gonzales","raw_affiliation_strings":["Plant Germplasm Quarantine Program, Animal and Plant Health Inspection Service, United States Department of Agriculture (USDA-APHIS), Beltsville, ML 20705, USA"],"raw_orcid":"https://orcid.org/0000-0002-9561-7016","affiliations":[{"raw_affiliation_string":"Plant Germplasm Quarantine Program, Animal and Plant Health Inspection Service, United States Department of Agriculture (USDA-APHIS), Beltsville, ML 20705, USA","institution_ids":["https://openalex.org/I1288380561","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024702355","display_name":"Zala Kogej Zwitter","orcid":"https://orcid.org/0000-0002-8146-2906","observed_orcids":["https://orcid.org/0000-0002-8146-2906"]},"institutions":[{"id":"https://openalex.org/I4210113529","display_name":"Jo\u017eef Stefan International Postgraduate School","ror":"https://ror.org/01hdkb925","country_code":"SI","type":"education","lineage":["https://openalex.org/I4210113529"]},{"id":"https://openalex.org/I4210140619","display_name":"National Institute of Biology","ror":"https://ror.org/03s5t0r17","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210140619"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Zala Kogej Zwitter","raw_affiliation_strings":["Department of Biotechnology and Systems Biology, National Institute of Biology (NIB), 1000 Ljubljana, Slovenia","Jo\u017eef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0002-8146-2906","affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Systems Biology, National Institute of Biology (NIB), 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210140619"]},{"raw_affiliation_string":"Jo\u017eef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210113529"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091483317","display_name":"Denis Kutnjak","orcid":"https://orcid.org/0000-0002-5327-0587","observed_orcids":["https://orcid.org/0000-0002-5327-0587"]},"institutions":[{"id":"https://openalex.org/I4210140619","display_name":"National Institute of Biology","ror":"https://ror.org/03s5t0r17","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210140619"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Denis Kutnjak","raw_affiliation_strings":["Department of Biotechnology and Systems Biology, National Institute of Biology (NIB), 1000 Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0002-5327-0587","affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Systems Biology, National Institute of Biology (NIB), 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210140619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029510260","display_name":"Janja Lamov\u0161ek","orcid":"https://orcid.org/0000-0001-6358-4486","observed_orcids":["https://orcid.org/0000-0001-6358-4486"]},"institutions":[{"id":"https://openalex.org/I4210125532","display_name":"Agricultural institute of Slovenia","ror":"https://ror.org/030dahd49","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210125532"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Janja Lamov\u0161ek","raw_affiliation_strings":["Plant Protection Department, Agricultural Institute of Slovenia (KIS), 1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Protection Department, Agricultural Institute of Slovenia (KIS), 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210125532"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087769116","display_name":"Marie Lefebvre","orcid":"https://orcid.org/0000-0002-3093-5873","observed_orcids":["https://orcid.org/0000-0002-3093-5873"]},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210089449","display_name":"Biologie du Fruit et Pathologie","ror":"https://ror.org/00ccpdp17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I4210088668","https://openalex.org/I4210089449"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie Lefebvre","raw_affiliation_strings":["UMR 1332 Biologie du Fruit et Pathologie, Institut National de Recherche pour l\u2019Agriculture, l\u2019Alimentation et l\u2019Environnement (INRAE), Universit\u00e9 de Bordeaux, 33882 Villenave-d\u2019Ornon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMR 1332 Biologie du Fruit et Pathologie, Institut National de Recherche pour l\u2019Agriculture, l\u2019Alimentation et l\u2019Environnement (INRAE), Universit\u00e9 de Bordeaux, 33882 Villenave-d\u2019Ornon, France","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I4210088668","https://openalex.org/I4210089449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032409985","display_name":"Martha Malapi\u2010Wight","orcid":"https://orcid.org/0000-0003-2249-6257","observed_orcids":["https://orcid.org/0000-0003-2249-6257"]},"institutions":[{"id":"https://openalex.org/I1288380561","display_name":"Animal and Plant Health Inspection Service","ror":"https://ror.org/0599wfz09","country_code":"US","type":"government","lineage":["https://openalex.org/I1288380561","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martha Malapi","raw_affiliation_strings":["Biotechnology Risk Analysis Program, Animal and Plant Health Inspection Service, United States Department of Agriculture (USDA-APHIS), Riverdale, ML 20737, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Risk Analysis Program, Animal and Plant Health Inspection Service, United States Department of Agriculture (USDA-APHIS), Riverdale, ML 20737, USA","institution_ids":["https://openalex.org/I1288380561","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067662276","display_name":"Irena Mavri\u010d Ple\u0161ko","orcid":"https://orcid.org/0000-0003-2874-3562","observed_orcids":["https://orcid.org/0000-0003-2874-3562"]},"institutions":[{"id":"https://openalex.org/I4210125532","display_name":"Agricultural institute of Slovenia","ror":"https://ror.org/030dahd49","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210125532"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Irena Mavri\u010d Ple\u0161ko","raw_affiliation_strings":["Plant Protection Department, Agricultural Institute of Slovenia (KIS), 1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Protection Department, Agricultural Institute of Slovenia (KIS), 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210125532"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064899160","display_name":"Serkan \u00d6nder","orcid":"https://orcid.org/0000-0001-8954-8707","observed_orcids":["https://orcid.org/0000-0001-8954-8707"]},"institutions":[{"id":"https://openalex.org/I51209816","display_name":"Eski\u015fehir Osmangazi University","ror":"https://ror.org/01dzjez04","country_code":"TR","type":"education","lineage":["https://openalex.org/I51209816"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Serkan \u00d6nder","raw_affiliation_strings":["Department of Plant Protection, Faculty of Agriculture, Eski\u015fehir Osmangazi University, Odunpazar\u0131, Eski\u015fehir 26160, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-8954-8707","affiliations":[{"raw_affiliation_string":"Department of Plant Protection, Faculty of Agriculture, Eski\u015fehir Osmangazi University, Odunpazar\u0131, Eski\u015fehir 26160, Turkey","institution_ids":["https://openalex.org/I51209816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027466058","display_name":"Jean-S\u00e9bastien Reynard","orcid":"https://orcid.org/0000-0002-2337-107X","observed_orcids":["https://orcid.org/0000-0002-2337-107X"]},"institutions":[{"id":"https://openalex.org/I4210139035","display_name":"Agroscope","ror":"https://ror.org/04d8ztx87","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210139035"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jean-S\u00e9bastien Reynard","raw_affiliation_strings":["Department of Plant Protection, Agroscope, 1260 Nyon, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-2337-107X","affiliations":[{"raw_affiliation_string":"Department of Plant Protection, Agroscope, 1260 Nyon, Switzerland","institution_ids":["https://openalex.org/I4210139035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053285321","display_name":"Ferran Salavert Pamblanco","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ferran Salavert Pamblanco","raw_affiliation_strings":["School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne NE1 7RU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne NE1 7RU, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086405936","display_name":"Olivier Schumpp","orcid":"https://orcid.org/0000-0002-2070-2144","observed_orcids":["https://orcid.org/0000-0002-2070-2144"]},"institutions":[{"id":"https://openalex.org/I4210139035","display_name":"Agroscope","ror":"https://ror.org/04d8ztx87","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210139035"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Olivier Schumpp","raw_affiliation_strings":["Department of Plant Protection, Agroscope, 1260 Nyon, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-2070-2144","affiliations":[{"raw_affiliation_string":"Department of Plant Protection, Agroscope, 1260 Nyon, Switzerland","institution_ids":["https://openalex.org/I4210139035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011867405","display_name":"Kristian Stevens","orcid":"https://orcid.org/0009-0006-8779-1774","observed_orcids":["https://orcid.org/0009-0006-8779-1774"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristian Stevens","raw_affiliation_strings":["Foundation Plant Services, Department of Plant Pathology, University of California, Davis, CA 95616, USA"],"raw_orcid":"https://orcid.org/0009-0006-8779-1774","affiliations":[{"raw_affiliation_string":"Foundation Plant Services, Department of Plant Pathology, University of California, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020630476","display_name":"Chandan Pal","orcid":"https://orcid.org/0000-0002-0503-8804","observed_orcids":["https://orcid.org/0000-0002-0503-8804"]},"institutions":[{"id":"https://openalex.org/I4405272790","display_name":"Zespri Group Limited (New Zealand)","ror":"https://ror.org/04qe1ff78","country_code":"NZ","type":"company","lineage":["https://openalex.org/I4405272790"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Chandan Pal","raw_affiliation_strings":["Zespri International Limited, 400 Maunganui Road, Mount Maunganui 3116, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zespri International Limited, 400 Maunganui Road, Mount Maunganui 3116, New Zealand","institution_ids":["https://openalex.org/I4405272790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058805319","display_name":"Lucie Tamisier","orcid":"https://orcid.org/0000-0002-9231-2997","observed_orcids":["https://orcid.org/0000-0002-9231-2997"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210137510","display_name":"G\u00e9n\u00e9tique et am\u00e9lioration des fruits et l\u00e9gumes","ror":"https://ror.org/03kk92g72","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210137510"]},{"id":"https://openalex.org/I4405263555","display_name":"Pathologie v\u00e9g\u00e9tale","ror":"https://ror.org/02prm7t27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4405263555"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lucie Tamisier","raw_affiliation_strings":["Unit\u00e9s GAFL et Pathologie V\u00e9g\u00e9tale, Institut National de Recherche pour l\u2019Agriculture, l\u2019Alimentation et l\u2019Environnement (INRAE), 84143 Montfavet, France"],"raw_orcid":"https://orcid.org/0000-0002-9231-2997","affiliations":[{"raw_affiliation_string":"Unit\u00e9s GAFL et Pathologie V\u00e9g\u00e9tale, Institut National de Recherche pour l\u2019Agriculture, l\u2019Alimentation et l\u2019Environnement (INRAE), 84143 Montfavet, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210137510","https://openalex.org/I4405263555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040727006","display_name":"\u00c7i\u011fdem Uluba\u015f Ser\u00e7e","orcid":"https://orcid.org/0000-0001-5337-5883","observed_orcids":["https://orcid.org/0000-0001-5337-5883"]},"institutions":[{"id":"https://openalex.org/I198265615","display_name":"Ni\u011fde \u00d6mer Halisdemir \u00dcniversitesi","ror":"https://ror.org/03ejnre35","country_code":"TR","type":"education","lineage":["https://openalex.org/I198265615"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"\u00c7i\u011fdem Uluba\u015f Ser\u00e7e","raw_affiliation_strings":["Department of Plant Production and Technologies, Faculty of Agricultural Sciences and Technologies, Ni\u011fde \u00d6mer Halisdemir University, 51240 Ni\u011fde, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-5337-5883","affiliations":[{"raw_affiliation_string":"Department of Plant Production and Technologies, Faculty of Agricultural Sciences and Technologies, Ni\u011fde \u00d6mer Halisdemir University, 51240 Ni\u011fde, Turkey","institution_ids":["https://openalex.org/I198265615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039486403","display_name":"Inge van Duivenbode","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Inge van Duivenbode","raw_affiliation_strings":["Dutch General Inspection Service for Agricultural Seed and Seed Potatoes (NAK), Randweg 14, 8304 AS Emmeloord, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dutch General Inspection Service for Agricultural Seed and Seed Potatoes (NAK), Randweg 14, 8304 AS Emmeloord, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005845333","display_name":"David W. Waite","orcid":"https://orcid.org/0000-0002-0184-2942","observed_orcids":["https://orcid.org/0000-0002-0184-2942"]},"institutions":[{"id":"https://openalex.org/I262074209","display_name":"Ministry for Primary Industries","ror":"https://ror.org/055y4y749","country_code":"NZ","type":"government","lineage":["https://openalex.org/I262074209"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"David W. Waite","raw_affiliation_strings":["Plant Health and Environment Laboratory, Ministry for Primary Industries, Auckland 1140, New Zealand"],"raw_orcid":"https://orcid.org/0000-0002-0184-2942","affiliations":[{"raw_affiliation_string":"Plant Health and Environment Laboratory, Ministry for Primary Industries, Auckland 1140, New Zealand","institution_ids":["https://openalex.org/I262074209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024081154","display_name":"Xiaojun Hu","orcid":"https://orcid.org/0000-0002-4464-206X","observed_orcids":["https://orcid.org/0000-0002-4464-206X","https://orcid.org/0000-0003-1348-1491"]},"institutions":[{"id":"https://openalex.org/I1288380561","display_name":"Animal and Plant Health Inspection Service","ror":"https://ror.org/0599wfz09","country_code":"US","type":"government","lineage":["https://openalex.org/I1288380561","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaojun Hu","raw_affiliation_strings":["Plant Germplasm Quarantine Program, Animal and Plant Health Inspection Service, United States Department of Agriculture (USDA-APHIS), Beltsville, ML 20705, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Germplasm Quarantine Program, Animal and Plant Health Inspection Service, United States Department of Agriculture (USDA-APHIS), Beltsville, ML 20705, USA","institution_ids":["https://openalex.org/I1288380561","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077710542","display_name":"Heiko Ziebell","orcid":"https://orcid.org/0000-0003-0059-1595","observed_orcids":["https://orcid.org/0000-0003-0059-1595"]},"institutions":[{"id":"https://openalex.org/I1326965316","display_name":"Julius K\u00fchn-Institut","ror":"https://ror.org/022d5qt08","country_code":"DE","type":"government","lineage":["https://openalex.org/I1326965316","https://openalex.org/I2801963157"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heiko Ziebell","raw_affiliation_strings":["Institute for Epidemiology and Pathogen Diagnostics, Federal Research Centre for Cultivated Plants, Julius K\u00fchn Institute (JKI), Messeweg 11-12, 38104 Braunschweig, Germany"],"raw_orcid":"https://orcid.org/0000-0003-0059-1595","affiliations":[{"raw_affiliation_string":"Institute for Epidemiology and Pathogen Diagnostics, Federal Research Centre for Cultivated Plants, Julius K\u00fchn Institute (JKI), Messeweg 11-12, 38104 Braunschweig, Germany","institution_ids":["https://openalex.org/I1326965316"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078719674","display_name":"S\u00e9bastien Massart","orcid":"https://orcid.org/0000-0002-7153-737X","observed_orcids":["https://orcid.org/0000-0002-7153-737X"]},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]},{"id":"https://openalex.org/I27895137","display_name":"Gembloux Agro-Bio Tech","ror":"https://ror.org/00bmzhb16","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565","https://openalex.org/I27895137"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"S\u00e9bastien Massart","raw_affiliation_strings":["Plant Pathology Laboratory, University of Li\u00e8ge, Gembloux Agro-Bio Tech, TERRA, 5030 Gembloux, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Pathology Laboratory, University of Li\u00e8ge, Gembloux Agro-Bio Tech, TERRA, 5030 Gembloux, Belgium","institution_ids":["https://openalex.org/I157674565","https://openalex.org/I27895137"]}]}],"institutions":[],"countries_distinct_count":10,"institutions_distinct_count":22,"corresponding_author_ids":["https://openalex.org/A5059191462","https://openalex.org/A5078719674"],"corresponding_institution_ids":["https://openalex.org/I157674565","https://openalex.org/I27895137","https://openalex.org/I4210145253"],"apc_list":{"value":2400,"currency":"CHF","value_usd":2669},"apc_paid":{"value":2400,"currency":"CHF","value_usd":2669},"fwci":2.0773,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.85230311,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"12","issue":"11","first_page":"2139","last_page":"2139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plant-virus-detection","display_name":"plant virus detection","score":0.7620000243186951},{"id":"https://openalex.org/keywords/plant-pests","display_name":"plant pests","score":0.8569999933242798},{"id":"https://openalex.org/keywords/fungal-pathogens","display_name":"fungal pathogens","score":0.48899999260902405},{"id":"https://openalex.org/keywords/insect-pests","display_name":"insect pests","score":0.9580000042915344},{"id":"https://openalex.org/keywords/mites","display_name":"mites","score":0.9789999723434448},{"id":"https://openalex.org/keywords/plant-virology","display_name":"plant virology","score":0.515999972820282}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.776160478591919},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5815551280975342},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5770513415336609},{"id":"https://openalex.org/C109110057","wikidata":"https://www.wikidata.org/wiki/Q1495434","display_name":"Plant virus","level":3,"score":0.5520612597465515},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5261078476905823},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.45809680223464966},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.43634337186813354},{"id":"https://openalex.org/C2985179745","wikidata":"https://www.wikidata.org/wiki/Q131449","display_name":"Plant species","level":2,"score":0.4246806502342224},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4105384051799774},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3004893362522125},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28421348333358765},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.16310656070709229},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.11085778474807739},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09630957245826721}],"mesh":[],"locations_count":14,"locations":[{"id":"doi:10.3390/plants12112139","doi":"https://doi.org/10.3390/plants12112139","is_oa":true,"landing_page_url":"https://doi.org/10.3390/plants12112139","pdf_url":"https://www.mdpi.com/2223-7747/12/11/2139/pdf?version=1685342006","source":{"id":"https://openalex.org/S4210230202","display_name":"Plants","issn_l":"2223-7747","issn":["2223-7747"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plants","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10255714","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10255714","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10255714/pdf/plants-12-02139.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plants (Basel)","raw_type":"Text"},{"id":"pmid:37299118","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37299118","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plants (Basel, Switzerland)","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-04117624v1","doi":null,"is_oa":true,"landing_page_url":"https://hal.inrae.fr/hal-04117624","pdf_url":"https://hal.inrae.fr/hal-04117624v1/file/2023_Haegeman_plants.pdf","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plants, 2023, 12 (11), pp.2139. ⟨10.3390/plants12112139⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dirros.openscience.si:IzpisGradiva.php?id=19262","doi":null,"is_oa":true,"landing_page_url":"https://dirros.openscience.si/IzpisGradiva.php?id=19262","pdf_url":"https://dirros.openscience.si/Dokument.php?id=26559&dn=","source":{"id":"https://openalex.org/S4377196363","display_name":"DiRROS repository (University of Maribor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I37696226","host_organization_name":"University of Maribor","host_organization_lineage":["https://openalex.org/I37696226"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 2223-7747","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt97v9d6dq","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/97v9d6dq","pdf_url":"https://escholarship.org/content/qt97v9d6dq/qt97v9d6dq.pdf?t=ry0o4d","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plants, vol 12, iss 11","raw_type":"article"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/305529","doi":null,"is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/305529","pdf_url":"https://orbi.uliege.be/bitstream/2268/305529/1/N%c2%b0808%20-%20Massart%202023.pdf","source":{"id":"https://openalex.org/S4306401300","display_name":"ORBi (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plants, 12 (11), 2139 (2023-05-29)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:acikerisim.ohu.edu.tr:11480/16556","doi":null,"is_oa":true,"landing_page_url":"https://doi.org/10.3390/plants12112139","pdf_url":null,"source":{"id":"https://openalex.org/S7407055360","display_name":"Ni\u011fde \u00dcniversitesi A\u00e7\u0131k Eri\u015fim Sistemi","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:40030533daaa4723a56319bd0debfd81","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/40030533daaa4723a56319bd0debfd81","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plants, Vol 12, Iss 11, p 2139 (2023)","raw_type":"article"},{"id":"pmh:oai:open-science.canada.ca:123456789/2845","doi":null,"is_oa":true,"landing_page_url":"https://doi.org/10.3390/plants12112139","pdf_url":null,"source":{"id":"https://openalex.org/S7407055455","display_name":"Federal Open Science Repository of Canada / Le D\u00e9p\u00f4t f\u00e9d\u00e9ral de science ouverte du Canada","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:oskar-bordeaux.fr:20.500.12278/185375","doi":null,"is_oa":false,"landing_page_url":"https://oskar-bordeaux.fr/handle/20.500.12278/185375","pdf_url":null,"source":{"id":"https://openalex.org/S4306402569","display_name":"Oskar-Bordeaux (Universite de Bordeaux)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I15057530","host_organization_name":"Universit\u00e9 de Bordeaux","host_organization_lineage":["https://openalex.org/I15057530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article de revue"},{"id":"pmh:oai:www.openagrar.de:openagrar_mods_00087670","doi":null,"is_oa":true,"landing_page_url":"https://www.openagrar.de/receive/openagrar_mods_00087670","pdf_url":null,"source":{"id":"https://openalex.org/S7407055137","display_name":"OpenAgrar","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.25405/ncl.34474551","doi":"https://doi.org/10.25405/ncl.34474551","is_oa":true,"landing_page_url":"https://doi.org/10.25405/ncl.34474551","pdf_url":null,"source":{"id":"https://openalex.org/S4306402485","display_name":"Newcastle University ePrints (Newcastle Univesity)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I84884186","host_organization_name":"Newcastle University","host_organization_lineage":["https://openalex.org/I84884186"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.25405/ncl.34474551.v1","doi":"https://doi.org/10.25405/ncl.34474551.v1","is_oa":true,"landing_page_url":"https://doi.org/10.25405/ncl.34474551.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306402485","display_name":"Newcastle University ePrints (Newcastle Univesity)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I84884186","host_organization_name":"Newcastle University","host_organization_lineage":["https://openalex.org/I84884186"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.3390/plants12112139","doi":"https://doi.org/10.3390/plants12112139","is_oa":true,"landing_page_url":"https://doi.org/10.3390/plants12112139","pdf_url":"https://www.mdpi.com/2223-7747/12/11/2139/pdf?version=1685342006","source":{"id":"https://openalex.org/S4210230202","display_name":"Plants","issn_l":"2223-7747","issn":["2223-7747"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plants","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G4254845764","display_name":null,"funder_award_id":"RI 18_A-289","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G4333601699","display_name":"Agrobiodiversity","funder_award_id":"P4-0072","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G4894716412","display_name":null,"funder_award_id":"and P4-","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G5422051858","display_name":null,"funder_award_id":"L7-2632 and P4-0165","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G5462005243","display_name":null,"funder_award_id":"2018-A-289","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G6010880478","display_name":"Biotechnology and Plant Systems Biology","funder_award_id":"P4-0165","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G7572843782","display_name":"Nanopore high-throughput sequencing for resolution of problems in plant pathogen epidemiology and diagnostics","funder_award_id":"L7-2632","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"}],"funders":[{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"},{"id":"https://openalex.org/F4320326817","display_name":"FOD Volksgezondheid, Veiligheid van de Voedselketen en Leefmilieu","ror":"https://ror.org/01rwa8h06"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4378651302.pdf","grobid_xml":"https://content.openalex.org/works/W4378651302.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1942729492","https://openalex.org/W1966568994","https://openalex.org/W1969522526","https://openalex.org/W1997989653","https://openalex.org/W2036897871","https://openalex.org/W2040898355","https://openalex.org/W2063131041","https://openalex.org/W2064556327","https://openalex.org/W2071939778","https://openalex.org/W2072934530","https://openalex.org/W2075716829","https://openalex.org/W2085926377","https://openalex.org/W2094373529","https://openalex.org/W2096525273","https://openalex.org/W2103296919","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2132038194","https://openalex.org/W2167824850","https://openalex.org/W2239037555","https://openalex.org/W2245585054","https://openalex.org/W2337747100","https://openalex.org/W2497092774","https://openalex.org/W2502239899","https://openalex.org/W2531619105","https://openalex.org/W2625348030","https://openalex.org/W2730233141","https://openalex.org/W2763816339","https://openalex.org/W2809389095","https://openalex.org/W2880795292","https://openalex.org/W2890534901","https://openalex.org/W2896357852","https://openalex.org/W2898301098","https://openalex.org/W2948622428","https://openalex.org/W2952021144","https://openalex.org/W2968450569","https://openalex.org/W2969234820","https://openalex.org/W2990618091","https://openalex.org/W2995935634","https://openalex.org/W3009074983","https://openalex.org/W3026115592","https://openalex.org/W3032503719","https://openalex.org/W3080185003","https://openalex.org/W3080377078","https://openalex.org/W3093218166","https://openalex.org/W3122768045","https://openalex.org/W3126277252","https://openalex.org/W3153691888","https://openalex.org/W4210418189","https://openalex.org/W4210819692","https://openalex.org/W4211037082","https://openalex.org/W4242289937","https://openalex.org/W4248735723","https://openalex.org/W4254687493","https://openalex.org/W4280626647","https://openalex.org/W4283218038","https://openalex.org/W4285726197","https://openalex.org/W4290653849","https://openalex.org/W4301182496"],"related_works":["https://openalex.org/W4416623160","https://openalex.org/W7106855682","https://openalex.org/W4403762582","https://openalex.org/W4389679113","https://openalex.org/W4280553265","https://openalex.org/W4388866369","https://openalex.org/W4286908344","https://openalex.org/W3123429278","https://openalex.org/W2911336328","https://openalex.org/W2886734910"],"abstract_inverted_index":{"High-throughput":[0],"sequencing":[1,6,57],"(HTS),":[2],"more":[3],"specifically":[4],"RNA":[5],"of":[7,56,63,99,107,114,161,181,192,202,229,231,247,256,260,275,288],"plant":[8,16,22,29,90,101,115,177,204,326,336],"tissues,":[9],"has":[10],"become":[11],"an":[12],"indispensable":[13],"tool":[14],"for":[15,89,96,152,157,186,285,334],"virologists":[17,30,327],"to":[18,36,49,81,125,145,155,299,322],"detect":[19,300],"and":[20,103,224,282,315],"identify":[21],"viruses.":[23],"During":[24],"the":[25,33,54,75,97,136,158,193,232,243,248,257,273,286],"data":[26,330],"analysis":[27],"step,":[28],"typically":[31],"compare":[32],"obtained":[34],"sequences":[35,46],"reference":[37],"virus":[38,91,153],"databases.":[39],"In":[40,74,166,190,291],"this":[41,70,214,310,318],"way,":[42],"they":[43,253,270],"are":[44],"neglecting":[45],"without":[47],"homologies":[48],"viruses,":[50],"which":[51,182],"usually":[52],"represent":[53],"majority":[55],"reads.":[58],"We":[59],"hypothesized":[60],"that":[61,252,269,295,328],"traces":[62,201],"other":[64,100,339],"pathogens":[65,102,122,130,163,205,234,262,302],"might":[66,331],"be":[67,132,332],"detected":[68,134,212,233],"in":[69,123,135,213,263,279,309,338],"unused":[71],"sequence":[72],"data.":[73,137],"present":[76],"study,":[77,319],"our":[78],"goal":[79],"was":[80,235],"investigate":[82],"whether":[83,127],"total":[84,306],"RNA-seq":[85,112,149,307],"data,":[86],"as":[87,344],"generated":[88],"detection,":[92],"is":[93,297],"also":[94],"suitable":[95],"detection":[98,154],"pests.":[104,165,207],"As":[105],"proof":[106],"concept,":[108],"we":[109,139,198,293,320],"first":[110],"analyzed":[111],"datasets":[113,150,169],"materials":[116],"with":[117],"confirmed":[118,236],"infections":[119],"by":[120,221,237],"cellular":[121],"order":[124],"check":[126,156,284],"these":[128,261],"non-viral":[129,162,203,289,301],"could":[131],"easily":[133],"Next,":[138],"set":[140],"up":[141],"a":[142],"community":[143],"effort":[144],"re-analyze":[146],"existing":[147],"Illumina":[148],"used":[151],"potential":[159],"presence":[160,228,259,287],"or":[164,206,303],"total,":[167],"101":[168],"from":[170,174,305],"15":[171,249],"participants":[172,250,267],"derived":[173],"51":[175],"different":[176],"species":[178],"were":[179,184,216,254],"re-analyzed,":[180],"37":[183,194],"selected":[185,195],"subsequent":[187],"in-depth":[188],"analyses.":[189,240],"29":[191],"samples":[196],"(78%),":[197],"found":[199],"convincing":[200],"The":[208,227],"organisms":[209],"most":[210],"frequently":[211],"way":[215],"fungi":[217],"(15/37":[218],"datasets),":[219],"followed":[220],"insects":[222],"(13/37)":[223],"mites":[225],"(9/37).":[226],"some":[230],"independent":[238],"(q)PCRs":[239],"After":[241],"communicating":[242],"results,":[244],"6":[245],"out":[246],"indicated":[251,268],"unaware":[255],"possible":[258,298],"their":[264,276,329],"sample(s).":[265],"All":[266],"would":[271],"broaden":[272],"scope":[274],"bioinformatic":[277],"analyses":[278],"future":[280],"studies":[281],"thus":[283],"pathogens.":[290],"conclusion,":[292],"show":[294],"it":[296],"pests":[304],"datasets,":[308],"case":[311],"primarily":[312],"fungi,":[313],"insects,":[314],"mites.":[316],"With":[317],"hope":[321],"raise":[323],"awareness":[324],"among":[325],"useful":[333],"fellow":[335],"pathologists":[337],"disciplines":[340],"(mycology,":[341],"entomology,":[342],"bacteriology)":[343],"well.":[345]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2023-05-30T00:00:00"}