{"id":"https://openalex.org/W4366752939","doi":"https://doi.org/10.1016/j.dib.2023.109171","title":"Genomic and 16S metabarcoding data of Holothuria tubulosa Gmelin, 1791","display_name":"Genomic and 16S metabarcoding data of Holothuria tubulosa Gmelin, 1791","publication_year":2023,"publication_date":"2023-04-22","ids":{"openalex":"https://openalex.org/W4366752939","doi":"https://doi.org/10.1016/j.dib.2023.109171","pmid":"https://pubmed.ncbi.nlm.nih.gov/37206897","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10189087"},"language":"en","primary_location":{"id":"doi:10.1016/j.dib.2023.109171","doi":"https://doi.org/10.1016/j.dib.2023.109171","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.dib.2023.109171","pdf_url":null,"source":{"id":"https://openalex.org/S2481029507","display_name":"Data in Brief","issn_l":"2352-3409","issn":["2352-3409"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","norway-1","oarl","poland-40","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data in Brief","raw_type":"journal-article"},"volume":null,"type":"data-paper","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.dib.2023.109171","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102779007","display_name":"Maria Kyritsi","orcid":"https://orcid.org/0000-0002-3034-3376","observed_orcids":["https://orcid.org/0000-0002-3034-3376"]},"institutions":[{"id":"https://openalex.org/I4210134249","display_name":"Centre for Research and Technology Hellas","ror":"https://ror.org/03bndpq63","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210134249"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Maria Kyritsi","raw_affiliation_strings":["Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece","institution_ids":["https://openalex.org/I4210134249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078149116","display_name":"George Tsiolas","orcid":"https://orcid.org/0000-0003-4945-2422","observed_orcids":["https://orcid.org/0000-0003-4945-2422"]},"institutions":[{"id":"https://openalex.org/I4210134249","display_name":"Centre for Research and Technology Hellas","ror":"https://ror.org/03bndpq63","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210134249"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George Tsiolas","raw_affiliation_strings":["Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece","institution_ids":["https://openalex.org/I4210134249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050695499","display_name":"Sofia Michailidou","orcid":"https://orcid.org/0000-0002-8250-0513","observed_orcids":["https://orcid.org/0000-0002-8250-0513"]},"institutions":[{"id":"https://openalex.org/I4210134249","display_name":"Centre for Research and Technology Hellas","ror":"https://ror.org/03bndpq63","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210134249"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Sofia Michailidou","raw_affiliation_strings":["Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece","institution_ids":["https://openalex.org/I4210134249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024100742","display_name":"\u039a\u03c9\u03bd\u03c3\u03c4\u03b1\u03bd\u03c4\u03af\u03bd\u03bf\u03c2 \u039a\u03bf\u03c5\u03ba\u03ac\u03c1\u03b1\u03c2","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210134249","display_name":"Centre for Research and Technology Hellas","ror":"https://ror.org/03bndpq63","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210134249"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Konstantinos Koukaras","raw_affiliation_strings":["Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece","institution_ids":["https://openalex.org/I4210134249"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059862506","display_name":"Anagnostis Argiriou","orcid":"https://orcid.org/0000-0002-9164-632X","observed_orcids":["https://orcid.org/0000-0002-9164-632X"]},"institutions":[{"id":"https://openalex.org/I4210134249","display_name":"Centre for Research and Technology Hellas","ror":"https://ror.org/03bndpq63","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210134249"]},{"id":"https://openalex.org/I98805295","display_name":"University of the Aegean","ror":"https://ror.org/03zsp3p94","country_code":"GR","type":"education","lineage":["https://openalex.org/I98805295"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Anagnostis Argiriou","raw_affiliation_strings":["Department of Food Science and Nutrition, University of the Aegean, Lemnos 81400, Greece","Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece"],"raw_orcid":"https://orcid.org/0000-0002-9164-632X","affiliations":[{"raw_affiliation_string":"Department of Food Science and Nutrition, University of the Aegean, Lemnos 81400, Greece","institution_ids":["https://openalex.org/I98805295"]},{"raw_affiliation_string":"Institute of Applied Biosciences / CERTH, P.O. Box 60361, Thermi, Thessaloniki 57001, Greece","institution_ids":["https://openalex.org/I4210134249"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5059862506"],"corresponding_institution_ids":["https://openalex.org/I4210134249","https://openalex.org/I98805295"],"apc_list":{"value":530,"currency":"USD","value_usd":530},"apc_paid":{"value":530,"currency":"USD","value_usd":530},"fwci":null,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"48","issue":null,"first_page":"109171","last_page":"109171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12841","display_name":"Echinoderm biology and ecology","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1104","display_name":"Aquatic Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12841","display_name":"Echinoderm biology and ecology","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1104","display_name":"Aquatic Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.06109999865293503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14399","display_name":"Invertebrate Taxonomy and Ecology","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/holothuria-tubulosa","display_name":"Holothuria tubulosa","score":1.0},{"id":"https://openalex.org/keywords/sea-cucumbers","display_name":"sea cucumbers","score":0.9100000262260437},{"id":"https://openalex.org/keywords/genome-assembly","display_name":"genome assembly","score":0.7310000061988831},{"id":"https://openalex.org/keywords/genome-size-estimation","display_name":"genome size estimation","score":0.8769999742507935},{"id":"https://openalex.org/keywords/k-mer-frequency","display_name":"k-mer frequency","score":0.8029999732971191},{"id":"https://openalex.org/keywords/gut-microbiota","display_name":"gut microbiota","score":0.9369999766349792},{"id":"https://openalex.org/keywords/gastric-microbiota","display_name":"gastric microbiota","score":0.6290000081062317},{"id":"https://openalex.org/keywords/16s-rrna","display_name":"16S rRNA","score":0.8230000138282776},{"id":"https://openalex.org/keywords/bacterial-community-composition","display_name":"bacterial community composition","score":0.5460000038146973},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"comparative genomics","score":0.6919999718666077},{"id":"https://openalex.org/keywords/north-aegean-sea","display_name":"North Aegean Sea","score":0.9309999942779541}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7495526075363159},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6501734256744385},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.5153798460960388},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.490263968706131},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4838079810142517},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4829213321208954},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4783560633659363},{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.4168933033943176},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.40113145112991333},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.234602689743042},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.10484522581100464}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1016/j.dib.2023.109171","doi":"https://doi.org/10.1016/j.dib.2023.109171","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.dib.2023.109171","pdf_url":null,"source":{"id":"https://openalex.org/S2481029507","display_name":"Data in Brief","issn_l":"2352-3409","issn":["2352-3409"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","norway-1","oarl","poland-40","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data in Brief","raw_type":"journal-article"},{"id":"doi:10.2139/ssrn.4359571","doi":"https://doi.org/10.2139/ssrn.4359571","is_oa":true,"landing_page_url":"https://doi.org/10.2139/ssrn.4359571","pdf_url":null,"source":{"id":"https://openalex.org/S4210172589","display_name":"SSRN Electronic Journal","issn_l":"1556-5068","issn":["1556-5068"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1318003438","host_organization_name":"RELX Group (Netherlands)","host_organization_lineage":["https://openalex.org/I1318003438"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:10189087","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10189087","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10189087/pdf/main.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Brief","raw_type":"Text"},{"id":"pmid:37206897","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37206897","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data in brief","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:9342c74d9c834ec4bf6d16d2031e77a8","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/9342c74d9c834ec4bf6d16d2031e77a8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data in Brief, Vol 48, Iss , Pp 109171- (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.dib.2023.109171","doi":"https://doi.org/10.1016/j.dib.2023.109171","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.dib.2023.109171","pdf_url":null,"source":{"id":"https://openalex.org/S2481029507","display_name":"Data in Brief","issn_l":"2352-3409","issn":["2352-3409"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","norway-1","oarl","poland-40","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data in Brief","raw_type":"journal-article"},"sustainable_development_goals":[{"score":1.0,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G4048726276","display_name":null,"funder_award_id":"PAR.045013","funder_id":"https://openalex.org/F4320337753","funder_display_name":"Interreg"}],"funders":[{"id":"https://openalex.org/F4320337753","display_name":"Interreg","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4366752939.pdf","grobid_xml":"https://content.openalex.org/works/W4366752939.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1982718220","https://openalex.org/W2032655465","https://openalex.org/W2056279562","https://openalex.org/W2115701239","https://openalex.org/W2267304921","https://openalex.org/W2371003679","https://openalex.org/W2401404581","https://openalex.org/W2795159677","https://openalex.org/W2797966972","https://openalex.org/W2807194798","https://openalex.org/W2963276645","https://openalex.org/W2979314567","https://openalex.org/W3012094285","https://openalex.org/W3089811728","https://openalex.org/W3165680411","https://openalex.org/W3213732104","https://openalex.org/W4211174124","https://openalex.org/W6749855577","https://openalex.org/W6768350240","https://openalex.org/W6912636611"],"related_works":["https://openalex.org/W6990460059","https://openalex.org/W7205651985","https://openalex.org/W2911917639","https://openalex.org/W7127408414","https://openalex.org/W4307462728","https://openalex.org/W2969290873","https://openalex.org/W3108279248","https://openalex.org/W4410823862","https://openalex.org/W7166872016","https://openalex.org/W7125614430"],"abstract_inverted_index":{"Holothuria":[0],"tubulosa":[1,54,83,143],"Gmelin,":[2],"1791":[3],"is":[4,26,35,99],"an":[5,57,105],"edible":[6],"sea":[7],"cucumber":[8],"species":[9,25],"widespread":[10],"in":[11,37,76,130],"the":[12,29,47,73,77,86,113,117,145],"Mediterranean":[13],"Sea":[14],"with":[15],"ecological":[16],"and":[17,28,41,79,120,148,152],"increasing":[18],"economic":[19],"importance.":[20],"Genome":[21,62],"data":[22,33,51],"of":[23,31,52,81,141],"holothurian":[24],"limited":[27],"availability":[30],"genomic":[32],"resources":[34,136],"crucial":[36],"understanding":[38],"their":[39],"biology":[40],"adaptability":[42],"mechanisms.":[43],"This":[44],"dataset":[45],"presents":[46],"raw":[48],"genome":[49,146],"sequence":[50],"H.":[53,82,142],"sequenced":[55],"on":[56,68,104],"Illumina":[58,106],"NextSeq":[59],"2000":[60],"platform.":[61,108],"size":[63],"estimation":[64],"was":[65,102,110],"performed":[66,103],"based":[67],"k-mer":[69],"frequency":[70],"approach.":[71],"Additionally,":[72],"bacterial":[74],"microbiome":[75],"stomach":[78],"intestine":[80],"collected":[84],"from":[85],"Strymonian":[87],"Gulf":[88],"(North":[89],"Aegean":[90],"Sea,":[91],"Greece)":[92],"through":[93],"16S":[94],"rRNA":[95],"amplicon":[96],"metabarcoding":[97],"sequencing":[98],"reported.":[100],"Sequencing":[101],"MiSeq":[107],"Analysis":[109],"conducted":[111],"using":[112],"QIIME2":[114],"software":[115],"package,":[116],"DADA2":[118],"algorithm":[119],"a":[121,138],"trained":[122],"classifier":[123],"for":[124,137,149],"taxonomy":[125],"assignment.":[126],"The":[127],"datasets":[128],"presented":[129],"this":[131],"work":[132],"serve":[133],"as":[134],"valuable":[135],"comprehensive":[139],"investigation":[140],"at":[144],"level":[147],"comparative":[150],"genomics":[151],"echinoderms":[153],"gut":[154],"microbial":[155],"studies.":[156]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2026-11-12T12:28:57.059296","created_date":"2023-04-24T00:00:00"}