{"id":"https://openalex.org/W4362556261","doi":"https://doi.org/10.1158/2159-8290.22541143.v1","title":"Supplementary Table from Deconvolving Clinically Relevant Cellular Immune Cross-talk from Bulk Gene Expression Using CODEFACS and LIRICS Stratifies Patients with Melanoma to Anti\u2013PD-1 Therapy","display_name":"Supplementary Table from Deconvolving Clinically Relevant Cellular Immune Cross-talk from Bulk Gene Expression Using CODEFACS and LIRICS Stratifies Patients with Melanoma to Anti\u2013PD-1 Therapy","publication_year":2023,"publication_date":"2023-04-04","ids":{"openalex":"https://openalex.org/W4362556261","doi":"https://doi.org/10.1158/2159-8290.22541143.v1"},"language":"en","primary_location":{"id":"doi:10.1158/2159-8290.22541143.v1","doi":"https://doi.org/10.1158/2159-8290.22541143.v1","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1158/2159-8290.22541143.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"supplementary-materials","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://dx.doi.org/10.1158/2159-8290.22541143.v1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020787458","display_name":"Kun Wang","orcid":"https://orcid.org/0000-0001-8923-8557","observed_orcids":["https://orcid.org/0000-0001-8923-8557"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kun Wang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068204137","display_name":"Sushant Patkar","orcid":"https://orcid.org/0000-0002-5877-0599","observed_orcids":["https://orcid.org/0000-0002-5877-0599"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sushant Patkar","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045212145","display_name":"Joo Sang Lee","orcid":"https://orcid.org/0000-0001-8564-0848","observed_orcids":["https://orcid.org/0000-0001-8564-0848"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joo Sang Lee","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041973530","display_name":"Edward Michael Gertz","orcid":"https://orcid.org/0000-0001-8390-4387","observed_orcids":["https://orcid.org/0000-0001-8390-4387"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E. Michael Gertz","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8390-4387","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059617425","display_name":"Welles Robinson","orcid":"https://orcid.org/0000-0001-9018-6811","observed_orcids":["https://orcid.org/0000-0001-9018-6811"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Welles Robinson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025950037","display_name":"Fiorella Schischlik","orcid":"https://orcid.org/0000-0003-4299-7657","observed_orcids":["https://orcid.org/0000-0003-4299-7657"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fiorella Schischlik","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-4299-7657","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091017356","display_name":"David Robert Crawford","orcid":"https://orcid.org/0000-0001-8947-0057","observed_orcids":["https://orcid.org/0000-0001-8947-0057"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David R. Crawford","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000317216","display_name":"Alejandro A. Sch\u00e4ffer","orcid":"https://orcid.org/0000-0002-2147-8033","observed_orcids":["https://orcid.org/0000-0002-2147-8033"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alejandro A. Sch\u00e4ffer","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-2147-8033","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5063492133","display_name":"Eytan Ruppin","orcid":"https://orcid.org/0000-0002-7862-3940","observed_orcids":["https://orcid.org/0000-0002-7862-3940"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eytan Ruppin","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7862-3940","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9648000001907349,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9648000001907349,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.0284000001847744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.00279999990016222,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/melanoma","display_name":"melanoma","score":0.984000027179718},{"id":"https://openalex.org/keywords/anti-pd-1-therapy","display_name":"anti-PD-1 therapy","score":0.9639999866485596},{"id":"https://openalex.org/keywords/immune-cell-deconvolution","display_name":"immune cell deconvolution","score":0.7390000224113464},{"id":"https://openalex.org/keywords/bulk-gene-expression","display_name":"bulk gene expression","score":0.6470000147819519},{"id":"https://openalex.org/keywords/immune-cell-composition","display_name":"immune cell composition","score":0.6169999837875366},{"id":"https://openalex.org/keywords/patient-stratification","display_name":"patient stratification","score":0.7720000147819519},{"id":"https://openalex.org/keywords/immune-checkpoint-inhibitors","display_name":"immune checkpoint inhibitors","score":0.5479999780654907}],"concepts":[{"id":"https://openalex.org/C2777658100","wikidata":"https://www.wikidata.org/wiki/Q180614","display_name":"Melanoma","level":2,"score":0.6087128520011902},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5041950941085815},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.44550174474716187},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.4259325861930847},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3740321397781372},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3459450602531433},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3324733376502991},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.25594672560691833},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.24933356046676636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24410831928253174},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22170427441596985},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.07486143708229065}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1158/2159-8290.22541143.v1","doi":"https://doi.org/10.1158/2159-8290.22541143.v1","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1158/2159-8290.22541143.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/22541143","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Supplementary_Table_from_Deconvolving_Clinically_Relevant_Cellular_Immune_Cross-talk_from_Bulk_Gene_Expression_Using_CODEFACS_and_LIRICS_Stratifies_Patients_with_Melanoma_to_Anti_PD-1_Therapy/22541143","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1158/2159-8290.22541143.v1","doi":"https://doi.org/10.1158/2159-8290.22541143.v1","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1158/2159-8290.22541143.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[{"score":0.9391000270843506,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4362546385","https://openalex.org/W6912591097","https://openalex.org/W4206676821","https://openalex.org/W3178921298","https://openalex.org/W4362641219","https://openalex.org/W4362617833","https://openalex.org/W4362640886","https://openalex.org/W7213583366","https://openalex.org/W7127165822"],"abstract_inverted_index":{"Supplementary":[0],"Table":[1],"from":[2,9],"Deconvolving":[3],"Clinically":[4],"Relevant":[5],"Cellular":[6],"Immune":[7],"Cross-talk":[8],"Bulk":[10],"Gene":[11],"Expression":[12],"Using":[13],"CODEFACS":[14],"and":[15],"LIRICS":[16],"Stratifies":[17],"Patients":[18],"with":[19],"Melanoma":[20],"to":[21],"Anti\u2013PD-1":[22],"Therapy":[23]},"counts_by_year":[],"updated_date":"2026-09-22T06:50:58.402377","created_date":"2023-04-06T00:00:00"}