{"id":"https://openalex.org/W4362490237","doi":"https://doi.org/10.1158/1535-7163.22520709.v1","title":"Supplementary Table 3 from Endogenous Retrovirus Transcript Levels Are Associated with Immunogenic Signatures in Multiple Metastatic Cancer Types","display_name":"Supplementary Table 3 from Endogenous Retrovirus Transcript Levels Are Associated with Immunogenic Signatures in Multiple Metastatic Cancer Types","publication_year":2023,"publication_date":"2023-04-03","ids":{"openalex":"https://openalex.org/W4362490237","doi":"https://doi.org/10.1158/1535-7163.22520709.v1"},"language":"en","primary_location":{"id":"doi:10.1158/1535-7163.22520709.v1","doi":"https://doi.org/10.1158/1535-7163.22520709.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/1535-7163.22520709.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"supplementary-materials","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1158/1535-7163.22520709.v1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081831776","display_name":"James Thomas Topham","orcid":"https://orcid.org/0009-0001-6601-8807","observed_orcids":["https://orcid.org/0009-0001-6601-8807"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James T. Topham","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058082067","display_name":"Emma Titmuss","orcid":"https://orcid.org/0000-0002-1993-6912","observed_orcids":["https://orcid.org/0000-0002-1993-6912"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emma Titmuss","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1993-6912","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012789041","display_name":"Erin Pleasance","orcid":"https://orcid.org/0000-0002-5104-042X","observed_orcids":["https://orcid.org/0000-0002-5104-042X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Erin D. Pleasance","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-5104-042X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103280206","display_name":"Laura M. Williamson","orcid":"https://orcid.org/0000-0001-7353-6533","observed_orcids":["https://orcid.org/0000-0001-7353-6533"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laura M. Williamson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036473360","display_name":"Joanna M. Karasinska","orcid":"https://orcid.org/0000-0001-6861-4189","observed_orcids":["https://orcid.org/0000-0001-6861-4189"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joanna M. Karasinska","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082292492","display_name":"Luka Culibrk","orcid":"https://orcid.org/0000-0003-1208-1920","observed_orcids":["https://orcid.org/0000-0003-1208-1920"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luka Culibrk","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073611908","display_name":"Michael K.C. Lee","orcid":"https://orcid.org/0000-0001-8075-3608","observed_orcids":["https://orcid.org/0000-0001-8075-3608"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael K.C. Lee","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8075-3608","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074901251","display_name":"Shehara Ramyalini Mendis","orcid":"https://orcid.org/0000-0001-9175-6329","observed_orcids":["https://orcid.org/0000-0001-9175-6329"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shehara Mendis","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9175-6329","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088325035","display_name":"Robert Edward Denroche","orcid":"https://orcid.org/0000-0003-2197-7083","observed_orcids":["https://orcid.org/0000-0003-2197-7083"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert E. Denroche","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-2197-7083","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051758076","display_name":"Gun-Ho Jang","orcid":"https://orcid.org/0000-0001-8169-7011","observed_orcids":["https://orcid.org/0000-0001-8169-7011"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gun-Ho Jang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085580353","display_name":"Steve E. Kalloger","orcid":"https://orcid.org/0000-0003-1332-7881","observed_orcids":["https://orcid.org/0000-0003-1332-7881"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steve E. Kalloger","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015015784","display_name":"Hui\u2010Li Wong","orcid":"https://orcid.org/0000-0003-3803-2107","observed_orcids":["https://orcid.org/0000-0003-3803-2107"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hui-Li Wong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001333381","display_name":"Richard A. Moore","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard A. Moore","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052194762","display_name":"Andrew J. J. Mungall","orcid":"https://orcid.org/0000-0002-0905-2742","observed_orcids":["https://orcid.org/0000-0002-0905-2742"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrew J. Mungall","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-0905-2742","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017021482","display_name":"Grainne Mary O'Kane","orcid":"https://orcid.org/0000-0002-8690-403X","observed_orcids":["https://orcid.org/0000-0002-8690-403X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grainne M. O'Kane","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068644454","display_name":"Jennifer Jane Knox","orcid":"https://orcid.org/0000-0003-3474-6647","observed_orcids":["https://orcid.org/0000-0003-3474-6647"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jennifer J. Knox","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110966875","display_name":"Steve Gallinger","orcid":"https://orcid.org/0000-0002-6998-9414","observed_orcids":["https://orcid.org/0000-0002-6998-9414","https://orcid.org/0000-0001-5004-8393"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steven Gallinger","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066894564","display_name":"Jonathan M. Loree","orcid":"https://orcid.org/0000-0001-8189-2132","observed_orcids":["https://orcid.org/0000-0001-8189-2132"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jonathan M. Loree","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8189-2132","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005840834","display_name":"Dixie L. Mager","orcid":"https://orcid.org/0000-0002-5955-2550","observed_orcids":["https://orcid.org/0000-0002-5955-2550"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dixie L. Mager","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-5955-2550","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088331751","display_name":"Janessa J. Laskin","orcid":"https://orcid.org/0000-0002-0161-9329","observed_orcids":["https://orcid.org/0000-0002-0161-9329"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Janessa Laskin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070061359","display_name":"Marco A. Marra","orcid":"https://orcid.org/0000-0001-7146-7175","observed_orcids":["https://orcid.org/0000-0001-7146-7175"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marco A. Marra","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7146-7175","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100728059","display_name":"Steven J.M. Jones","orcid":"https://orcid.org/0000-0003-3394-2208","observed_orcids":["https://orcid.org/0000-0003-3394-2208","https://orcid.org/0000-0002-3927-3562"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steven J.M. Jones","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-3394-2208","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104256891","display_name":"David F. Schaeffer","orcid":"https://orcid.org/0000-0002-7341-1308","observed_orcids":["https://orcid.org/0000-0002-7341-1308"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David F. Schaeffer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5001731680","display_name":"Daniel John Renouf","orcid":"https://orcid.org/0000-0002-7597-6089","observed_orcids":["https://orcid.org/0000-0002-7597-6089"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel J. Renouf","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.5023999810218811,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.5023999810218811,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.18790000677108765,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.0737999975681305,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/endogenous-retroviruses","display_name":"endogenous retroviruses","score":0.9909999966621399},{"id":"https://openalex.org/keywords/metastatic-cancer","display_name":"metastatic cancer","score":0.8629999756813049},{"id":"https://openalex.org/keywords/gene-set-enrichment-analysis","display_name":"gene set enrichment analysis","score":0.8920000195503235},{"id":"https://openalex.org/keywords/upregulated-genes","display_name":"upregulated genes","score":0.7480000257492065},{"id":"https://openalex.org/keywords/tumor-immunology","display_name":"tumor immunology","score":0.5669999718666077}],"concepts":[{"id":"https://openalex.org/C121346293","wikidata":"https://www.wikidata.org/wiki/Q1340715","display_name":"Endogenous retrovirus","level":4,"score":0.5785828232765198},{"id":"https://openalex.org/C16613235","wikidata":"https://www.wikidata.org/wiki/Q285982","display_name":"Endogeny","level":2,"score":0.483352392911911},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4610643982887268},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.4315980076789856},{"id":"https://openalex.org/C2778431562","wikidata":"https://www.wikidata.org/wiki/Q189308","display_name":"Retrovirus","level":3,"score":0.4189787209033966},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.38390204310417175},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3520512580871582},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32958662509918213},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3242736756801605},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.31005793809890747},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3078377842903137},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.24375280737876892},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18768936395645142},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15270695090293884},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.09723496437072754},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1158/1535-7163.22520709.v1","doi":"https://doi.org/10.1158/1535-7163.22520709.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/1535-7163.22520709.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/22520709","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Supplementary_Table_3_from_Endogenous_Retrovirus_Transcript_Levels_Are_Associated_with_Immunogenic_Signatures_in_Multiple_Metastatic_Cancer_Types/22520709","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1158/1535-7163.22520709.v1","doi":"https://doi.org/10.1158/1535-7163.22520709.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/1535-7163.22520709.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[{"score":0.9537000060081482,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2994722079","https://openalex.org/W4391734559","https://openalex.org/W7164936560","https://openalex.org/W2093139291","https://openalex.org/W4322775544","https://openalex.org/W4232725965","https://openalex.org/W2062009974","https://openalex.org/W2084304758","https://openalex.org/W425292031","https://openalex.org/W3183254048"],"abstract_inverted_index":{"Supplemental":[0],"Table":[1],"S3":[2],"lists":[3],"gene":[4],"sets":[5],"significantly":[6],"enriched":[7],"among":[8],"genes":[9],"up-regulated":[10],"in":[11],"VMP":[12],"samples.":[13]},"counts_by_year":[],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2023-04-05T00:00:00"}
