{"id":"https://openalex.org/W4361909077","doi":"https://doi.org/10.1158/1078-0432.22451777","title":"Supplementary Table 2 from Next-Generation Sequencing of Translocation Renal Cell Carcinoma Reveals Novel RNA Splicing Partners and Frequent Mutations of Chromatin-Remodeling Genes","display_name":"Supplementary Table 2 from Next-Generation Sequencing of Translocation Renal Cell Carcinoma Reveals Novel RNA Splicing Partners and Frequent Mutations of Chromatin-Remodeling Genes","publication_year":2023,"publication_date":"2023-03-31","ids":{"openalex":"https://openalex.org/W4361909077","doi":"https://doi.org/10.1158/1078-0432.22451777"},"language":"en","primary_location":{"id":"doi:10.1158/1078-0432.22451777","doi":"https://doi.org/10.1158/1078-0432.22451777","is_oa":true,"landing_page_url":"https://doi.org/10.1158/1078-0432.22451777","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"supplementary-materials","is_traditional":false,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1158/1078-0432.22451777","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064378838","display_name":"Gabriel G. Malouf","orcid":"https://orcid.org/0000-0003-3527-0417","observed_orcids":["https://orcid.org/0000-0003-3527-0417","https://orcid.org/0000-0001-9524-9885"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gabriel G. Malouf","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072226386","display_name":"Xiaoping Su","orcid":"https://orcid.org/0000-0003-1824-943X","observed_orcids":["https://orcid.org/0000-0003-1824-943X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaoping Su","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100647956","display_name":"Hui Yao","orcid":"https://orcid.org/0000-0002-7800-0858","observed_orcids":["https://orcid.org/0000-0002-7800-0858"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hui Yao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069915515","display_name":"Jianjun Gao","orcid":"https://orcid.org/0000-0001-6138-4472","observed_orcids":["https://orcid.org/0000-0001-6138-4472"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jianjun Gao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036785658","display_name":"Liangwen Xiong","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liangwen Xiong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102437000","display_name":"Qiuming He","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qiuming He","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063195568","display_name":"\u00c9va Comp\u00e9rat","orcid":"https://orcid.org/0000-0001-8488-543X","observed_orcids":["https://orcid.org/0000-0001-8488-543X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eva Comp\u00e9rat","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109039053","display_name":"J\u00e9r\u00f4me Couturier","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J\u00e9r\u00f4me Couturier","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083305562","display_name":"Vincent Molini\u00e9","orcid":"https://orcid.org/0000-0003-1465-6580","observed_orcids":["https://orcid.org/0000-0003-1465-6580"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vincent Molini\u00e9","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049672639","display_name":"Bernard J. Escudier","orcid":"https://orcid.org/0000-0002-4626-0479","observed_orcids":["https://orcid.org/0000-0002-4626-0479"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bernard Escudier","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070218005","display_name":"Philippe Camparo","orcid":"https://orcid.org/0000-0002-5030-1974","observed_orcids":["https://orcid.org/0000-0002-5030-1974"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Philippe Camparo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032650752","display_name":"Denaha J. Doss","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Denaha J. Doss","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044622369","display_name":"Erika J. Thompson","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Erika J. Thompson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110336054","display_name":"David Khayat","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Khayat","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017537551","display_name":"Christopher G. Wood","orcid":"https://orcid.org/0000-0003-3450-8809","observed_orcids":["https://orcid.org/0000-0003-3450-8809"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christopher G. Wood","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086881402","display_name":"Willie Yu","orcid":"https://orcid.org/0000-0002-1230-3426","observed_orcids":["https://orcid.org/0000-0002-1230-3426"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Willie Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039053890","display_name":"Bin Tean Teh","orcid":"https://orcid.org/0000-0003-1514-1124","observed_orcids":["https://orcid.org/0000-0003-1514-1124"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bin T. Teh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026079862","display_name":"John N. Weinstein","orcid":"https://orcid.org/0000-0001-9401-6908","observed_orcids":["https://orcid.org/0000-0001-9401-6908"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John Weinstein","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5058115259","display_name":"Nizar M. Tannir","orcid":"https://orcid.org/0000-0001-5559-8060","observed_orcids":["https://orcid.org/0000-0001-5559-8060"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nizar M. Tannir","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10449","display_name":"Renal cell carcinoma treatment","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10449","display_name":"Renal cell carcinoma treatment","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.0066999997943639755,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12820","display_name":"Chromatin Remodeling and Cancer","score":0.005200000014156103,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/translocation-renal-cell-carcinoma","display_name":"translocation renal cell carcinoma","score":0.9710000157356262},{"id":"https://openalex.org/keywords/fusion-transcripts","display_name":"fusion transcripts","score":0.9229999780654907},{"id":"https://openalex.org/keywords/chromatin-remodeling-genes","display_name":"chromatin remodeling genes","score":0.9570000171661377},{"id":"https://openalex.org/keywords/mutation","display_name":"genetic mutations","score":0.7210000157356262},{"id":"https://openalex.org/keywords/next-generation-sequencing","display_name":"next-generation sequencing","score":0.6700000166893005}],"concepts":[{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.6752316951751709},{"id":"https://openalex.org/C167227067","wikidata":"https://www.wikidata.org/wiki/Q5113739","display_name":"Chromatin remodeling","level":4,"score":0.6433699727058411},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.602432131767273},{"id":"https://openalex.org/C138626823","wikidata":"https://www.wikidata.org/wiki/Q916504","display_name":"Chromosomal translocation","level":3,"score":0.5980687737464905},{"id":"https://openalex.org/C111829193","wikidata":"https://www.wikidata.org/wiki/Q1108970","display_name":"Fusion gene","level":3,"score":0.5548855066299438},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.53926682472229},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4830651879310608},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48013731837272644},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4339294731616974},{"id":"https://openalex.org/C2777472916","wikidata":"https://www.wikidata.org/wiki/Q1164529","display_name":"Renal cell carcinoma","level":2,"score":0.4249001443386078},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40036284923553467},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3906109035015106},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2217313051223755},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.17019733786582947}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1158/1078-0432.22451777","doi":"https://doi.org/10.1158/1078-0432.22451777","is_oa":true,"landing_page_url":"https://doi.org/10.1158/1078-0432.22451777","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"doi:10.1158/1078-0432.22451777.v1","doi":"https://doi.org/10.1158/1078-0432.22451777.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1158/1078-0432.22451777.v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/22451777","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Supplementary_Table_2_from_Next-Generation_Sequencing_of_Translocation_Renal_Cell_Carcinoma_Reveals_Novel_RNA_Splicing_Partners_and_Frequent_Mutations_of_Chromatin-Remodeling_Genes/22451777","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1158/1078-0432.22451777","doi":"https://doi.org/10.1158/1078-0432.22451777","is_oa":true,"landing_page_url":"https://doi.org/10.1158/1078-0432.22451777","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6240000128746033,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2068507286","https://openalex.org/W4361950994","https://openalex.org/W2800816607","https://openalex.org/W1572901993","https://openalex.org/W1583020265"],"abstract_inverted_index":{"XLSX":[0],"file":[1],"-":[2],"12K,":[3],"List":[4],"of":[5],"fusion":[6],"transcripts":[7],"identified":[8],"in":[9],"our":[10],"dataset":[11],"with":[12],"validation":[13],"accuracy.":[14]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2023-04-05T00:00:00"}