{"id":"https://openalex.org/W4303940475","doi":"https://doi.org/10.29048/makufebed.1110458","title":"Genome-Wide Characterization and In-silico Transcriptional Expression Analysis of PEBP Family in Solanum lycopersicum L.","display_name":"Genome-Wide Characterization and In-silico Transcriptional Expression Analysis of PEBP Family in Solanum lycopersicum L.","publication_year":2022,"publication_date":"2022-10-09","ids":{"openalex":"https://openalex.org/W4303940475","doi":"https://doi.org/10.29048/makufebed.1110458"},"language":"en","primary_location":{"id":"doi:10.29048/makufebed.1110458","doi":"https://doi.org/10.29048/makufebed.1110458","is_oa":true,"landing_page_url":"https://doi.org/10.29048/makufebed.1110458","pdf_url":"https://dergipark.org.tr/en/download/article-file/2403202","source":{"id":"https://openalex.org/S4210234575","display_name":"Mehmet Akif Ersoy \u00dcniversitesi Fen Bilimleri Enstit\u00fcs\u00fc Dergisi","issn_l":"1309-2243","issn":["1309-2243"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","tr-dizin"],"host_organization":"https://openalex.org/P4310318287","host_organization_name":"Association of Food Technology, Turkey","host_organization_lineage":["https://openalex.org/P4310318287"],"host_organization_lineage_names":["Association of Food Technology, Turkey"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mehmet Akif Ersoy \u00dcniversitesi Fen Bilimleri Enstit\u00fcs\u00fc Dergisi","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://dergipark.org.tr/en/download/article-file/2403202","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087592051","display_name":"Ali K\u0131yak","orcid":"https://orcid.org/0000-0002-6631-7778","observed_orcids":["https://orcid.org/0000-0002-6631-7778"]},"institutions":[{"id":"https://openalex.org/I54515432","display_name":"Burdur Mehmet Akif Ersoy \u00dcniversitesi","ror":"https://ror.org/04xk0dc21","country_code":"TR","type":"education","lineage":["https://openalex.org/I54515432"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Ali KIYAK","raw_affiliation_strings":["BURDUR MEHMET AK\u0130F ERSOY \u00dcN\u0130VERS\u0130TES\u0130"],"raw_orcid":"https://orcid.org/0000-0002-6631-7778","affiliations":[{"raw_affiliation_string":"BURDUR MEHMET AK\u0130F ERSOY \u00dcN\u0130VERS\u0130TES\u0130","institution_ids":["https://openalex.org/I54515432"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5087592051"],"corresponding_institution_ids":["https://openalex.org/I54515432"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":"Ek (Suppl.) 1","first_page":"300","last_page":"310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11268","display_name":"Light effects on plants","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphatidylethanolamine-binding-protein","display_name":"phosphatidylethanolamine-binding protein","score":0.9779999852180481},{"id":"https://openalex.org/keywords/pebp-gene-family","display_name":"PEBP gene family","score":0.9900000095367432},{"id":"https://openalex.org/keywords/tomato","display_name":"tomato","score":0.9990000128746033},{"id":"https://openalex.org/keywords/gene-family-identification","display_name":"gene family identification","score":0.765999972820282},{"id":"https://openalex.org/keywords/phylogenetic-classification","display_name":"phylogenetic classification","score":0.8849999904632568},{"id":"https://openalex.org/keywords/gene-structure","display_name":"gene structure","score":0.824999988079071},{"id":"https://openalex.org/keywords/promoter-analysis","display_name":"promoter analysis","score":0.9639999866485596},{"id":"https://openalex.org/keywords/tissue-specific-expression","display_name":"tissue-specific gene expression","score":0.6510000228881836},{"id":"https://openalex.org/keywords/flowering-time","display_name":"flowering time","score":0.7120000123977661},{"id":"https://openalex.org/keywords/plant-architecture","display_name":"plant architecture","score":0.7570000290870667},{"id":"https://openalex.org/keywords/seed-dormancy","display_name":"seed dormancy","score":0.9959999918937683}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6937254667282104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.66264808177948},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6194297075271606},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5899689793586731},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.48194336891174316},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.43712154030799866},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3328756093978882}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.29048/makufebed.1110458","doi":"https://doi.org/10.29048/makufebed.1110458","is_oa":true,"landing_page_url":"https://doi.org/10.29048/makufebed.1110458","pdf_url":"https://dergipark.org.tr/en/download/article-file/2403202","source":{"id":"https://openalex.org/S4210234575","display_name":"Mehmet Akif Ersoy \u00dcniversitesi Fen Bilimleri Enstit\u00fcs\u00fc Dergisi","issn_l":"1309-2243","issn":["1309-2243"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","tr-dizin"],"host_organization":"https://openalex.org/P4310318287","host_organization_name":"Association of Food Technology, Turkey","host_organization_lineage":["https://openalex.org/P4310318287"],"host_organization_lineage_names":["Association of Food Technology, Turkey"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mehmet Akif Ersoy \u00dcniversitesi Fen Bilimleri Enstit\u00fcs\u00fc Dergisi","raw_type":"journal-article"},{"id":"pmh:oai:dergipark.org.tr:article/1110458","doi":null,"is_oa":true,"landing_page_url":"https://dergipark.org.tr/tr/pub/makufebed/issue/73662/1110458","pdf_url":"https://dergipark.org.tr/tr/pub/makufebed/issue/73662/1110458","source":{"id":"https://openalex.org/S4306401840","display_name":"DergiPark (Istanbul University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67581229","host_organization_name":"Istanbul University","host_organization_lineage":["https://openalex.org/I67581229"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"The Journal of Graduate School of Natural and Applied Sciences of Mehmet Akif Ersoy University","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.29048/makufebed.1110458","doi":"https://doi.org/10.29048/makufebed.1110458","is_oa":true,"landing_page_url":"https://doi.org/10.29048/makufebed.1110458","pdf_url":"https://dergipark.org.tr/en/download/article-file/2403202","source":{"id":"https://openalex.org/S4210234575","display_name":"Mehmet Akif Ersoy \u00dcniversitesi Fen Bilimleri Enstit\u00fcs\u00fc Dergisi","issn_l":"1309-2243","issn":["1309-2243"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","tr-dizin"],"host_organization":"https://openalex.org/P4310318287","host_organization_name":"Association of Food Technology, Turkey","host_organization_lineage":["https://openalex.org/P4310318287"],"host_organization_lineage_names":["Association of Food Technology, Turkey"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mehmet Akif Ersoy \u00dcniversitesi Fen Bilimleri Enstit\u00fcs\u00fc Dergisi","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.40450000762939453,"display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4303940475.pdf","grobid_xml":"https://content.openalex.org/works/W4303940475.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1494918147","https://openalex.org/W1512720088","https://openalex.org/W1521361500","https://openalex.org/W1536886974","https://openalex.org/W1561402164","https://openalex.org/W1606124170","https://openalex.org/W1709815505","https://openalex.org/W1859837269","https://openalex.org/W1948111942","https://openalex.org/W1973253766","https://openalex.org/W1979649013","https://openalex.org/W1987385657","https://openalex.org/W2024294468","https://openalex.org/W2024947127","https://openalex.org/W2027297581","https://openalex.org/W2032303183","https://openalex.org/W2033449219","https://openalex.org/W2048923264","https://openalex.org/W2053990388","https://openalex.org/W2055043387","https://openalex.org/W2056970736","https://openalex.org/W2074415831","https://openalex.org/W2081544309","https://openalex.org/W2082554284","https://openalex.org/W2083783640","https://openalex.org/W2091831514","https://openalex.org/W2098246849","https://openalex.org/W2099347841","https://openalex.org/W2102129193","https://openalex.org/W2102159144","https://openalex.org/W2107301081","https://openalex.org/W2107915254","https://openalex.org/W2111146369","https://openalex.org/W2116429296","https://openalex.org/W2119205648","https://openalex.org/W2122245399","https://openalex.org/W2123313379","https://openalex.org/W2131493813","https://openalex.org/W2133124877","https://openalex.org/W2140415861","https://openalex.org/W2141073061","https://openalex.org/W2141292707","https://openalex.org/W2146553913","https://openalex.org/W2152008652","https://openalex.org/W2156248428","https://openalex.org/W2157344326","https://openalex.org/W2162871766","https://openalex.org/W2165221570","https://openalex.org/W2166671294","https://openalex.org/W2346412991","https://openalex.org/W2469392485","https://openalex.org/W2477453901","https://openalex.org/W2610065188","https://openalex.org/W2799524357","https://openalex.org/W2891190315","https://openalex.org/W2899798266","https://openalex.org/W2934923169","https://openalex.org/W2957135019","https://openalex.org/W3015494424","https://openalex.org/W3034009485","https://openalex.org/W3036319615","https://openalex.org/W3095583226","https://openalex.org/W3111025211","https://openalex.org/W3181542529"],"related_works":["https://openalex.org/W4378228343","https://openalex.org/W4410301215","https://openalex.org/W4286697178","https://openalex.org/W4408873688","https://openalex.org/W4308424427","https://openalex.org/W3111025211","https://openalex.org/W2378468533","https://openalex.org/W3129371360","https://openalex.org/W4393194956","https://openalex.org/W4225568092"],"abstract_inverted_index":{"Phosphatidylethanolamine-binding":[0],"proteins":[1],"(PEBPs)":[2],"are":[3,22],"an":[4,23],"important":[5,24,64],"gene":[6,56,104],"family":[7,57],"with":[8],"highly":[9],"conserved":[10,99,106],"protein":[11,107],"sequences":[12],"represented":[13],"in":[14,26,49,58,130,149],"three":[15],"taxonomic":[16],"divisions.":[17],"In":[18,51,101],"plants,":[19],"PEBP":[20,39,55,78,117,147],"genes":[21,40,79,118,148],"actors":[25],"the":[27,54,62,94,97,103,140],"regulation":[28],"of":[29,61,96,115,124,146],"flowering":[30],"time,":[31],"plant":[32],"architecture":[33],"and":[34,46,71,93,111,133,143],"seed":[35],"dormancy.":[36],"Despite":[37],"this,":[38],"have":[41],"not":[42],"been":[43],"genome-wide":[44,70],"identified":[45,69],"systematically":[47],"analyzed":[48],"tomato.":[50,150],"this":[52],"study,":[53],"tomato,":[59],"one":[60],"economically":[63],"Solanum":[65],"species,":[66],"was":[67],"comprehensively":[68],"characterized":[72],"by":[73],"bioinformatics":[74],"tools.":[75],"Here,":[76],"12":[77],"were":[80,83,119],"identified,":[81],"which":[82],"classified":[84],"into":[85],"four":[86],"clades":[87],"based":[88],"on":[89],"their":[90,128],"phylogenetic":[91],"relationships":[92],"presence":[95],"structurally":[98],"domain/motif.":[100],"addition,":[102],"structure,":[105,108],"promoter":[109],"regions,":[110],"digital":[112],"expression":[113,122,129],"levels":[114],"these":[116],"determined.":[120],"Digital":[121],"profiling":[123],"SlPEBP":[125],"transcripts":[126],"revealed":[127],"most":[131],"developmental":[132],"anatomical":[134],"tissues.":[135],"These":[136],"results":[137],"will":[138],"provide":[139],"further":[141],"functional":[142],"evolutionary":[144],"characterization":[145]},"counts_by_year":[],"updated_date":"2026-08-31T07:19:18.363097","created_date":"2022-10-10T00:00:00"}
