{"id":"https://openalex.org/W4298975834","doi":"https://doi.org/10.48550/arxiv.1607.01384","title":"SMISS: A protein function prediction server by integrating multiple sources","display_name":"SMISS: A protein function prediction server by integrating multiple sources","publication_year":2016,"publication_date":"2016-03-22","ids":{"openalex":"https://openalex.org/W4298975834","doi":"https://doi.org/10.48550/arxiv.1607.01384"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:1607.01384","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1607.01384","pdf_url":"https://arxiv.org/pdf/1607.01384","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"volume":null,"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1607.01384","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085487073","display_name":"Renzhi Cao","orcid":"https://orcid.org/0000-0002-8345-343X","observed_orcids":["https://orcid.org/0000-0002-8345-343X"]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cao, Renzhi","raw_affiliation_strings":["Department of Computer Science , University of Missouri , Columbia , Missouri , 65211 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science , University of Missouri , Columbia , Missouri , 65211 , USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075153934","display_name":"Zhaolong Zhong","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhong, Zhaolong","raw_affiliation_strings":["Department of Computer Science , University of Missouri , Columbia , Missouri , 65211 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science , University of Missouri , Columbia , Missouri , 65211 , USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044354277","display_name":"Jianlin Jack Cheng","orcid":"https://orcid.org/0000-0003-0305-2853","observed_orcids":["https://orcid.org/0000-0003-0305-2853"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cheng, Jianlin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8978999853134155,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8978999853134155,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.06430000066757202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.024000000208616257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"protein function prediction","score":0.9990000128746033},{"id":"https://openalex.org/keywords/web-server","display_name":"web server","score":0.7910000085830688},{"id":"https://openalex.org/keywords/protein-protein-interaction-network","display_name":"protein-protein interaction network","score":0.8289999961853027},{"id":"https://openalex.org/keywords/gene-interaction-networks","display_name":"gene interaction networks","score":0.996999979019165},{"id":"https://openalex.org/keywords/sequence-based-prediction","display_name":"sequence-based prediction","score":0.6729999780654907}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.8813329339027405},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7883555889129639},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6829050779342651},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5550265908241272},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.49109530448913574},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.48895084857940674},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.4398467540740967},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.43214017152786255},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.41149190068244934},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37308812141418457},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32203441858291626},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18188011646270752},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.13258323073387146},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0830528736114502}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:1607.01384","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1607.01384","pdf_url":"https://arxiv.org/pdf/1607.01384","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.1607.01384","doi":"https://doi.org/10.48550/arxiv.1607.01384","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1607.01384","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1607.01384","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/1607.01384","pdf_url":"https://arxiv.org/pdf/1607.01384","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4298975834.pdf","grobid_xml":"https://content.openalex.org/works/W4298975834.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1500518213","https://openalex.org/W1663797894","https://openalex.org/W2945057500","https://openalex.org/W7097748455","https://openalex.org/W2154479185","https://openalex.org/W2168118433","https://openalex.org/W7095186051","https://openalex.org/W4412708807","https://openalex.org/W2608914020","https://openalex.org/W7095240383"],"abstract_inverted_index":{"SMISS":[0,49],"is":[1,65],"a":[2],"novel":[3],"web":[4,107,128],"server":[5],"for":[6,16,115,143],"protein":[7,26,33,46,55],"function":[8,27,47,56],"prediction.":[9],"Three":[10],"different":[11,17,21,124],"predictors":[12],"can":[13,81,120],"be":[14,121],"selected":[15],"usage.":[18],"It":[19,71,119],"integrates":[20],"sources":[22],"to":[23,52],"improve":[24],"the":[25,31,42,60,69,86,101,117],"prediction":[28,57],"accuracy,":[29],"including":[30],"query":[32,61],"sequence,":[34],"protein-protein":[35],"interaction":[36,39],"network,":[37,40],"gene-gene":[38],"and":[41,78,92,109,137],"rules":[43],"mined":[44],"from":[45],"associations.":[48],"automatically":[50],"switch":[51],"ab":[53],"initio":[54],"based":[58],"on":[59],"sequence":[62],"when":[63],"there":[64],"no":[66],"homologs":[67],"in":[68,100,123,126],"database.":[70],"takes":[72],"fasta":[73],"format":[74],"sequences":[75,80],"as":[76,131],"input,":[77],"several":[79],"submit":[82],"together":[83],"without":[84],"influencing":[85],"computation":[87],"speed":[88],"too":[89],"much.":[90],"PHP":[91,106],"Perl":[93],"are":[94,113,141],"two":[95],"primary":[96],"programming":[97],"language":[98],"used":[99,114,122],"server.":[102,118],"The":[103],"CodeIgniter":[104],"MVC":[105],"framework":[108,112],"Bootstrap":[110],"front-end":[111],"building":[116],"platforms":[125],"standard":[127],"browser,":[129],"such":[130],"Windows,":[132],"Mac":[133],"OS":[134],"X,":[135],"Linux,":[136],"iOS.":[138],"No":[139],"plugins":[140],"needed":[142],"our":[144],"website.":[145],"Availability:":[146],"http://tulip.rnet.missouri.edu/profunc/.":[147]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-09-30T09:27:27.532063","created_date":"2022-10-02T00:00:00"}
