{"id":"https://openalex.org/W4295880122","doi":"https://doi.org/10.1371/journal.pcbi.1010492","title":"RNA velocity unraveled","display_name":"RNA velocity unraveled","publication_year":2022,"publication_date":"2022-09-12","ids":{"openalex":"https://openalex.org/W4295880122","doi":"https://doi.org/10.1371/journal.pcbi.1010492","pmid":"https://pubmed.ncbi.nlm.nih.gov/36094956","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/9499228"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010492","doi":"https://doi.org/10.1371/journal.pcbi.1010492","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010492","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","ccf-b","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041010223","display_name":"Gennady Gorin","orcid":"https://orcid.org/0000-0001-6097-2029","observed_orcids":["https://orcid.org/0000-0001-6097-2029"]},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gennady Gorin","raw_affiliation_strings":["Division of Chemistry and Chemical Engineering, California Institute of Technology","Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6097-2029","affiliations":[{"raw_affiliation_string":"Division of Chemistry and Chemical Engineering, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058813323","display_name":"Meichen Fang","orcid":"https://orcid.org/0000-0002-8217-0710","observed_orcids":["https://orcid.org/0000-0002-8217-0710"]},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meichen Fang","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology","Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-8217-0710","affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014033824","display_name":"Tara Chari","orcid":"https://orcid.org/0000-0002-6953-4313","observed_orcids":["https://orcid.org/0000-0002-6953-4313"]},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tara Chari","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology","Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6953-4313","affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020008219","display_name":"Lior S. Pachter","orcid":"https://orcid.org/0000-0002-9164-6231","observed_orcids":["https://orcid.org/0000-0002-9164-6231"]},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lior Pachter","raw_affiliation_strings":["Department of Computing and Mathematical Sciences, California Institute of Technology","Division of Biology and Biological Engineering, California Institute of Technology","Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, California, United States of America","Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-9164-6231","affiliations":[{"raw_affiliation_string":"Department of Computing and Mathematical Sciences, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5020008219"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":9.9267,"has_fulltext":true,"cited_by_count":179,"citation_normalized_percentile":{"value":0.9930965,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"18","issue":"9","first_page":"e1010492","last_page":"e1010492"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-velocity","display_name":"RNA velocity","score":0.9980000257492065},{"id":"https://openalex.org/keywords/single-cell-transcriptomics","display_name":"single-cell transcriptomics","score":0.6970000267028809},{"id":"https://openalex.org/keywords/markov-chain-model","display_name":"Markov chain model","score":0.6600000262260437},{"id":"https://openalex.org/keywords/parameter-sensitivity","display_name":"parameter sensitivity","score":0.7730000019073486},{"id":"https://openalex.org/keywords/method-comparison","display_name":"method comparison","score":0.4860000014305115}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7107793092727661},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.633930504322052},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.6168792247772217},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5886152982711792},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4599560499191284},{"id":"https://openalex.org/C2776285698","wikidata":"https://www.wikidata.org/wiki/Q2642214","display_name":"Exposition (narrative)","level":2,"score":0.45514941215515137},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39719197154045105},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.16225117444992065},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09729617834091187},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1010492","doi":"https://doi.org/10.1371/journal.pcbi.1010492","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010492","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","ccf-b","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"doi:10.1101/2022.02.12.480214","doi":"https://doi.org/10.1101/2022.02.12.480214","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2022.02.12.480214","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2022/02/13/2022.02.12.480214.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:9499228","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9499228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmid:36094956","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36094956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":"Journal Article"},{"id":"pmh:oai:authors.library.caltech.edu:113438","doi":null,"is_oa":true,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20220214-147056100","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Report or Paper"},{"id":"pmh:oai:authors.library.caltech.edu:116968","doi":null,"is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/116968/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:7e761d3aaae24babbd862289e8ed3f97","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/7e761d3aaae24babbd862289e8ed3f97","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 9, p e1010492 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010492","doi":"https://doi.org/10.1371/journal.pcbi.1010492","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010492","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010492&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","ccf-b","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G758694790","display_name":"A comprehensive whole-brain atlas of cell types in the mouse","funder_award_id":"U19MH114830","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4295880122.pdf","grobid_xml":"https://content.openalex.org/works/W4295880122.grobid-xml"},"referenced_works_count":184,"referenced_works":["https://openalex.org/W565175910","https://openalex.org/W1510900750","https://openalex.org/W1571087346","https://openalex.org/W1976714996","https://openalex.org/W1984429906","https://openalex.org/W1984883254","https://openalex.org/W1988714210","https://openalex.org/W1992927069","https://openalex.org/W2001798854","https://openalex.org/W2005361347","https://openalex.org/W2018944012","https://openalex.org/W2030070978","https://openalex.org/W2036983007","https://openalex.org/W2042321087","https://openalex.org/W2066594542","https://openalex.org/W2067630518","https://openalex.org/W2068751516","https://openalex.org/W2074097219","https://openalex.org/W2075251971","https://openalex.org/W2077322578","https://openalex.org/W2080252570","https://openalex.org/W2088760574","https://openalex.org/W2094438648","https://openalex.org/W2099793004","https://openalex.org/W2101810447","https://openalex.org/W2102787760","https://openalex.org/W2104254083","https://openalex.org/W2113053834","https://openalex.org/W2117762572","https://openalex.org/W2121793131","https://openalex.org/W2122121413","https://openalex.org/W2123012564","https://openalex.org/W2124361485","https://openalex.org/W2127535453","https://openalex.org/W2128120736","https://openalex.org/W2130596496","https://openalex.org/W2134672468","https://openalex.org/W2137088684","https://openalex.org/W2139199979","https://openalex.org/W2141688036","https://openalex.org/W2143447881","https://openalex.org/W2145748272","https://openalex.org/W2155804510","https://openalex.org/W2157999920","https://openalex.org/W2159055782","https://openalex.org/W2167244112","https://openalex.org/W2177009097","https://openalex.org/W2181255501","https://openalex.org/W2183676805","https://openalex.org/W2211016425","https://openalex.org/W2265892941","https://openalex.org/W2268351591","https://openalex.org/W2283889297","https://openalex.org/W2322523654","https://openalex.org/W2323326409","https://openalex.org/W2344881354","https://openalex.org/W2345179863","https://openalex.org/W2398184959","https://openalex.org/W2518662817","https://openalex.org/W2533012945","https://openalex.org/W2582033455","https://openalex.org/W2588694271","https://openalex.org/W2594807826","https://openalex.org/W2615816755","https://openalex.org/W2621349699","https://openalex.org/W2625783081","https://openalex.org/W2746479894","https://openalex.org/W2760415787","https://openalex.org/W2764169974","https://openalex.org/W2766437506","https://openalex.org/W2768250222","https://openalex.org/W2785199982","https://openalex.org/W2785668899","https://openalex.org/W2786690691","https://openalex.org/W2791634322","https://openalex.org/W2792693509","https://openalex.org/W2795460076","https://openalex.org/W2806524706","https://openalex.org/W2809616137","https://openalex.org/W2810696621","https://openalex.org/W2811137963","https://openalex.org/W2895322450","https://openalex.org/W2895602577","https://openalex.org/W2896156331","https://openalex.org/W2899067706","https://openalex.org/W2899348912","https://openalex.org/W2901308272","https://openalex.org/W2901677030","https://openalex.org/W2906180136","https://openalex.org/W2911279170","https://openalex.org/W2927507212","https://openalex.org/W2946682337","https://openalex.org/W2947216895","https://openalex.org/W2948517648","https://openalex.org/W2949237386","https://openalex.org/W2950372712","https://openalex.org/W2950583356","https://openalex.org/W2951268343","https://openalex.org/W2951444558","https://openalex.org/W2951506174","https://openalex.org/W2951911538","https://openalex.org/W2952580930","https://openalex.org/W2952840385","https://openalex.org/W2953405766","https://openalex.org/W2953852587","https://openalex.org/W2954066696","https://openalex.org/W2989747508","https://openalex.org/W2989985381","https://openalex.org/W2997280954","https://openalex.org/W2998065416","https://openalex.org/W3000145506","https://openalex.org/W3006800618","https://openalex.org/W3007264533","https://openalex.org/W3009609875","https://openalex.org/W3010742608","https://openalex.org/W3013151148","https://openalex.org/W3013163248","https://openalex.org/W3013599686","https://openalex.org/W3013821085","https://openalex.org/W3013936092","https://openalex.org/W3021060601","https://openalex.org/W3022585649","https://openalex.org/W3040819442","https://openalex.org/W3045053780","https://openalex.org/W3047141442","https://openalex.org/W3047392293","https://openalex.org/W3082793808","https://openalex.org/W3088401235","https://openalex.org/W3089504536","https://openalex.org/W3105727837","https://openalex.org/W3119249186","https://openalex.org/W3121112961","https://openalex.org/W3125980488","https://openalex.org/W3126629478","https://openalex.org/W3131529660","https://openalex.org/W3134241784","https://openalex.org/W3134266784","https://openalex.org/W3136569600","https://openalex.org/W3137366663","https://openalex.org/W3145635506","https://openalex.org/W3157094484","https://openalex.org/W3157384750","https://openalex.org/W3161618053","https://openalex.org/W3163881056","https://openalex.org/W3165360138","https://openalex.org/W3169494650","https://openalex.org/W3171488579","https://openalex.org/W3174608384","https://openalex.org/W3186637316","https://openalex.org/W3194520274","https://openalex.org/W3197020116","https://openalex.org/W3198536560","https://openalex.org/W3199346329","https://openalex.org/W3204119535","https://openalex.org/W3206184033","https://openalex.org/W3209211486","https://openalex.org/W3214478476","https://openalex.org/W3215961257","https://openalex.org/W4205496949","https://openalex.org/W4205569118","https://openalex.org/W4210494137","https://openalex.org/W4210575300","https://openalex.org/W4210587306","https://openalex.org/W4210832276","https://openalex.org/W4220765701","https://openalex.org/W4225981439","https://openalex.org/W4245699060","https://openalex.org/W4285254634","https://openalex.org/W4299157219","https://openalex.org/W4300223101","https://openalex.org/W4301028492","https://openalex.org/W4301421397","https://openalex.org/W4305013698","https://openalex.org/W4311676301","https://openalex.org/W4311895189","https://openalex.org/W4313255175","https://openalex.org/W4320719433","https://openalex.org/W4363673883","https://openalex.org/W4385945347","https://openalex.org/W4387966382","https://openalex.org/W4391333047","https://openalex.org/W6784824514","https://openalex.org/W7002181973","https://openalex.org/W7039294642"],"related_works":["https://openalex.org/W6939656386","https://openalex.org/W7143482114","https://openalex.org/W4387966382","https://openalex.org/W6902141975","https://openalex.org/W7118132592","https://openalex.org/W3205040906","https://openalex.org/W4403948744","https://openalex.org/W3121112961","https://openalex.org/W7129022171","https://openalex.org/W4404663527"],"abstract_inverted_index":{"We":[0],"perform":[1,38],"a":[2,10,27,58,67],"thorough":[3],"analysis":[4,71],"of":[5,16,30,80],"RNA":[6,63],"velocity":[7],"methods,":[8],"with":[9],"view":[11],"towards":[12],"understanding":[13],"the":[14,17,31],"suitability":[15],"various":[18],"assumptions":[19],"underlying":[20,32,52],"popular":[21],"implementations.":[22],"In":[23],"addition":[24],"to":[25,44,48,62,74],"providing":[26],"self-contained":[28],"exposition":[29],"mathematics,":[33],"we":[34,55],"undertake":[35],"simulations":[36],"and":[37,51,65,78],"controlled":[39],"experiments":[40],"on":[41],"biological":[42],"datasets":[43],"assess":[45],"workflow":[46],"sensitivity":[47],"parameter":[49],"choices":[50],"biology.":[53],"Finally,":[54],"argue":[56],"for":[57,69,76],"more":[59],"rigorous":[60],"approach":[61],"velocity,":[64],"present":[66],"framework":[68],"Markovian":[70],"that":[72],"points":[73],"directions":[75],"improvement":[77],"mitigation":[79],"current":[81],"problems.":[82]},"counts_by_year":[{"year":2026,"cited_by_count":44},{"year":2025,"cited_by_count":49},{"year":2024,"cited_by_count":45},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":12}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2022-09-15T00:00:00"}