{"id":"https://openalex.org/W4292993733","doi":"https://doi.org/10.1016/j.lanwpc.2022.100556","title":"Whole genome sequencing for tuberculosis in Victoria, Australia: A genomic implementation study from 2017 to 2020","display_name":"Whole genome sequencing for tuberculosis in Victoria, Australia: A genomic implementation study from 2017 to 2020","publication_year":2022,"publication_date":"2022-08-18","ids":{"openalex":"https://openalex.org/W4292993733","doi":"https://doi.org/10.1016/j.lanwpc.2022.100556","pmid":"https://pubmed.ncbi.nlm.nih.gov/36034164","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/9405109"},"language":"en","primary_location":{"id":"doi:10.1016/j.lanwpc.2022.100556","doi":"https://doi.org/10.1016/j.lanwpc.2022.100556","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.lanwpc.2022.100556","pdf_url":null,"source":{"id":"https://openalex.org/S4210225048","display_name":"The Lancet Regional Health - Western Pacific","issn_l":"2666-6065","issn":["2666-6065"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","ki-jl-1","norway-1","oarl","poland-20","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet Regional Health - Western Pacific","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.lanwpc.2022.100556","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029497061","display_name":"Katie Dale","orcid":"https://orcid.org/0000-0002-0655-1685","observed_orcids":["https://orcid.org/0000-0002-0655-1685"]},"institutions":[{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I4210158168","display_name":"Melbourne Health","ror":"https://ror.org/04z4kmw33","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Katie Dale","raw_affiliation_strings":["Victorian Tuberculosis Program, Melbourne Health, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":"https://orcid.org/0000-0002-0655-1685","affiliations":[{"raw_affiliation_string":"Victorian Tuberculosis Program, Melbourne Health, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081837603","display_name":"Maria Globan","orcid":"https://orcid.org/0000-0002-3400-2843","observed_orcids":["https://orcid.org/0000-0002-3400-2843"]},"institutions":[{"id":"https://openalex.org/I4210088630","display_name":"Victorian Infectious Diseases Reference Laboratory","ror":"https://ror.org/005ynf375","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210088630"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Maria Globan","raw_affiliation_strings":["Victorian Infectious Diseases Reference Laboratory (VIDRL), at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Victorian Infectious Diseases Reference Laboratory (VIDRL), at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I4210088630","https://openalex.org/I4210105123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086443313","display_name":"Kristy Horan","orcid":"https://orcid.org/0009-0003-2636-7820","observed_orcids":["https://orcid.org/0009-0003-2636-7820","https://orcid.org/0000-0003-3960-1519"]},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kristy Horan","raw_affiliation_strings":["Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I4210105123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040256275","display_name":"Norelle L. Sherry","orcid":"https://orcid.org/0000-0002-7789-8360","observed_orcids":["https://orcid.org/0000-0002-7789-8360"]},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Norelle Sherry","raw_affiliation_strings":["Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I4210105123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074463845","display_name":"Susan A. Ballard","orcid":"https://orcid.org/0000-0002-0096-9474","observed_orcids":["https://orcid.org/0000-0002-0096-9474"]},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Susan Ballard","raw_affiliation_strings":["Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I4210105123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112165288","display_name":"Ee Laine Tay","orcid":"https://orcid.org/0000-0001-5214-205X","observed_orcids":["https://orcid.org/0000-0001-5214-205X"]},"institutions":[{"id":"https://openalex.org/I4210091014","display_name":"Department of Health and Human Services","ror":"https://ror.org/00b9jhh55","country_code":"AU","type":"government","lineage":["https://openalex.org/I2801037857","https://openalex.org/I4210091014"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ee Laine Tay","raw_affiliation_strings":["Communicable Disease Epidemiology and Surveillance, Health Protection Branch, Public Health Division, Department of Health, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Communicable Disease Epidemiology and Surveillance, Health Protection Branch, Public Health Division, Department of Health, Victoria, Australia","institution_ids":["https://openalex.org/I4210091014"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023964882","display_name":"Simone Bittmann","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I4210158168","display_name":"Melbourne Health","ror":"https://ror.org/04z4kmw33","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Simone Bittmann","raw_affiliation_strings":["Victorian Tuberculosis Program, Melbourne Health, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Victorian Tuberculosis Program, Melbourne Health, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080993375","display_name":"Niamh Meagher","orcid":"https://orcid.org/0000-0001-5324-8307","observed_orcids":["https://orcid.org/0000-0001-5324-8307"]},"institutions":[{"id":"https://openalex.org/I1320473756","display_name":"The Royal Melbourne Hospital","ror":"https://ror.org/005bvs909","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1320473756","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Niamh Meagher","raw_affiliation_strings":["Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Victoria, Australia","Department of Infectious Diseases at the Doherty Institute for Infection & Immunity, The University of Melbourne and Royal Melbourne Hospital, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Department of Infectious Diseases at the Doherty Institute for Infection & Immunity, The University of Melbourne and Royal Melbourne Hospital, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090998567","display_name":"David J. Price","orcid":"https://orcid.org/0000-0003-0076-3123","observed_orcids":["https://orcid.org/0000-0003-0076-3123"]},"institutions":[{"id":"https://openalex.org/I1320473756","display_name":"The Royal Melbourne Hospital","ror":"https://ror.org/005bvs909","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I1320473756","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"David J. Price","raw_affiliation_strings":["Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Victoria, Australia","Department of Infectious Diseases at the Doherty Institute for Infection & Immunity, The University of Melbourne and Royal Melbourne Hospital, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Department of Infectious Diseases at the Doherty Institute for Infection & Immunity, The University of Melbourne and Royal Melbourne Hospital, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002105758","display_name":"Benjamin P. Howden","orcid":"https://orcid.org/0000-0003-0237-1473","observed_orcids":["https://orcid.org/0000-0003-0237-1473"]},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Benjamin P. Howden","raw_affiliation_strings":["Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I4210105123"]},{"raw_affiliation_string":"Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I4210105123"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033969972","display_name":"Deborah Anne Williamson","orcid":"https://orcid.org/0000-0001-7363-6665","observed_orcids":["https://orcid.org/0000-0001-7363-6665"]},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I4210088630","display_name":"Victorian Infectious Diseases Reference Laboratory","ror":"https://ror.org/005ynf375","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210088630"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Deborah A. Williamson","raw_affiliation_strings":["Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Victoria, Australia","Victorian Infectious Diseases Reference Laboratory (VIDRL), at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"],"raw_orcid":"https://orcid.org/0000-0001-7363-6665","affiliations":[{"raw_affiliation_string":"Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Victorian Infectious Diseases Reference Laboratory (VIDRL), at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I4210088630","https://openalex.org/I4210105123"]},{"raw_affiliation_string":"Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia","institution_ids":["https://openalex.org/I196021976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020786234","display_name":"Justin Timothy Denholm","orcid":"https://orcid.org/0000-0002-9214-6431","observed_orcids":["https://orcid.org/0000-0002-9214-6431"]},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I4210105123","display_name":"Peter Doherty Institute","ror":"https://ror.org/016899r71","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1320473756","https://openalex.org/I165779595","https://openalex.org/I4210105123","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I4210158168","display_name":"Melbourne Health","ror":"https://ror.org/04z4kmw33","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Justin Denholm","raw_affiliation_strings":["Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","Victorian Tuberculosis Program, Melbourne Health, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I4210105123"]},{"raw_affiliation_string":"Victorian Tuberculosis Program, Melbourne Health, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I4210105123","https://openalex.org/I4210158168"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5029497061"],"corresponding_institution_ids":["https://openalex.org/I4210105123","https://openalex.org/I4210158168"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":2.1585,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.89236814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"28","issue":null,"first_page":"100556","last_page":"100556"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11381","display_name":"Infectious Diseases and Tuberculosis","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13586","display_name":"HIV, TB, and STIs Epidemiology","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tuberculosis","display_name":"tuberculosis","score":0.9509999752044678},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.9909999966621399},{"id":"https://openalex.org/keywords/transmission-clusters","display_name":"transmission clusters","score":0.5270000100135803},{"id":"https://openalex.org/keywords/household-transmission","display_name":"household transmission","score":0.8140000104904175},{"id":"https://openalex.org/keywords/sputum-smear-positivity","display_name":"sputum smear positivity","score":0.8180000185966492},{"id":"https://openalex.org/keywords/contact-tracing","display_name":"contact tracing","score":0.8299999833106995},{"id":"https://openalex.org/keywords/low-incidence-tuberculosis","display_name":"low-incidence tuberculosis","score":0.800000011920929},{"id":"https://openalex.org/keywords/victoria-australia","display_name":"Victoria, Australia","score":0.6200000047683716},{"id":"https://openalex.org/keywords/genomic-epidemiology","display_name":"genomic epidemiology","score":0.5120000243186951}],"concepts":[{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.7764427065849304},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.6967570781707764},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.6417440176010132},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.6397331953048706},{"id":"https://openalex.org/C73269764","wikidata":"https://www.wikidata.org/wiki/Q954529","display_name":"Poisson regression","level":3,"score":0.5883665084838867},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5437085032463074},{"id":"https://openalex.org/C61511704","wikidata":"https://www.wikidata.org/wiki/Q1671857","display_name":"Incidence (geometry)","level":2,"score":0.5355555415153503},{"id":"https://openalex.org/C97669555","wikidata":"https://www.wikidata.org/wiki/Q4118435","display_name":"Molecular epidemiology","level":4,"score":0.47698408365249634},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.44650745391845703},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3572043776512146},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.3201448917388916},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3150539994239807},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.16656020283699036},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.16012659668922424},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12257367372512817},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10877731442451477},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09253484010696411},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1016/j.lanwpc.2022.100556","doi":"https://doi.org/10.1016/j.lanwpc.2022.100556","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.lanwpc.2022.100556","pdf_url":null,"source":{"id":"https://openalex.org/S4210225048","display_name":"The Lancet Regional Health - Western Pacific","issn_l":"2666-6065","issn":["2666-6065"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","ki-jl-1","norway-1","oarl","poland-20","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet Regional Health - Western Pacific","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9405109","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9405109/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9405109/pdf/","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lancet Reg Health West Pac","raw_type":"Text"},{"id":"pmid:36034164","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36034164","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet regional health. Western Pacific","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:ca76d559f64146709a2a7c09ea901e46","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/ca76d559f64146709a2a7c09ea901e46","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"The Lancet Regional Health. Western Pacific, Vol 28, Iss , Pp 100556- (2022)","raw_type":"article"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/317402","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/11343/317402","pdf_url":null,"source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1016/j.lanwpc.2022.100556","doi":"https://doi.org/10.1016/j.lanwpc.2022.100556","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.lanwpc.2022.100556","pdf_url":null,"source":{"id":"https://openalex.org/S4210225048","display_name":"The Lancet Regional Health - Western Pacific","issn_l":"2666-6065","issn":["2666-6065"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","ki-jl-1","norway-1","oarl","poland-20","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet Regional Health - Western Pacific","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9940000176429749,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322127","display_name":"Department of Health, State Government of Victoria","ror":"https://ror.org/00b9jhh55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4292993733.pdf","grobid_xml":"https://content.openalex.org/works/W4292993733.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W186307931","https://openalex.org/W194376621","https://openalex.org/W205622831","https://openalex.org/W1503030608","https://openalex.org/W1535139272","https://openalex.org/W1863711781","https://openalex.org/W1941443464","https://openalex.org/W1944107535","https://openalex.org/W1976305179","https://openalex.org/W2012473911","https://openalex.org/W2019790854","https://openalex.org/W2029808995","https://openalex.org/W2060003027","https://openalex.org/W2066862513","https://openalex.org/W2098679442","https://openalex.org/W2102359080","https://openalex.org/W2111582999","https://openalex.org/W2115727302","https://openalex.org/W2149310596","https://openalex.org/W2162912294","https://openalex.org/W2168358002","https://openalex.org/W2169510674","https://openalex.org/W2337112893","https://openalex.org/W2558519010","https://openalex.org/W2605343367","https://openalex.org/W2766429296","https://openalex.org/W2794372577","https://openalex.org/W2795801049","https://openalex.org/W2803413725","https://openalex.org/W2856168987","https://openalex.org/W2887586912","https://openalex.org/W2889019390","https://openalex.org/W2898608072","https://openalex.org/W2904268068","https://openalex.org/W2915026237","https://openalex.org/W2922991112","https://openalex.org/W2947098398","https://openalex.org/W2952463453","https://openalex.org/W2955577869","https://openalex.org/W2978470949","https://openalex.org/W2978960125","https://openalex.org/W3005235420","https://openalex.org/W3019706413","https://openalex.org/W3033862776","https://openalex.org/W3134449255","https://openalex.org/W3183184747","https://openalex.org/W4281492528"],"related_works":["https://openalex.org/W7118683493","https://openalex.org/W4414444375","https://openalex.org/W2922991112","https://openalex.org/W4416403536","https://openalex.org/W3059303181","https://openalex.org/W7212177848","https://openalex.org/W2938508698","https://openalex.org/W2337112893","https://openalex.org/W3178417333","https://openalex.org/W2955773288"],"abstract_inverted_index":{"Background:":[0],"transmission":[1,63,99],"in":[2,38,105,119,169],"the":[3,11,51,103,115,142,159,164,170],"low-incidence":[4,107],"setting":[5],"of":[6,13,55,117,123,145],"Victoria,":[7],"Australia,":[8],"and":[9,62,138,163],"assess":[10],"utility":[12],"WGS.":[14],"Methods:":[15],"isolates":[16],"from":[17,20,141],"TB":[18],"cases":[19],"2017":[21],"to":[22,76,113],"2020.":[23],"Potential":[24],"clusters":[25,42],"(\u226412":[26],"single":[27],"nucleotide":[28],"polymorphisms":[29],"[SNPs])":[30],"were":[31,43,70],"investigated":[32],"for":[33,133,150],"epidemiological":[34,57],"links.":[35],"Transmission":[36],"events":[37],"highly-related":[39],"(\u22645":[40],"SNPs)":[41],"classified":[44],"as":[45],"likely":[46],"or":[47,53,158,178],"possible,":[48],"based":[49],"on":[50],"presence":[52],"absence":[54],"an":[56],"link,":[58],"respectively.":[59],"Case":[60],"characteristics":[61],"settings":[64],"(as":[65],"defined":[66],"by":[67,155],"case":[68,81,96,136],"relationship)":[69],"summarised.":[71],"Poisson":[72],"regression":[73],"was":[74,91,153],"used":[75],"examine":[77],"associations":[78],"with":[79,93],"secondary":[80,95],"number.":[82],"Findings:":[83],"=":[84,87],"12,":[85],"median":[86],"7.5":[88],"cases).":[89],"Sputum-smear-positivity":[90],"associated":[92],"higher":[94],"numbers.":[97],"Interpretation:":[98],"commonly":[100],"occurs":[101],"outside":[102],"household":[104],"our":[106],"setting.":[108],"Further":[109],"work":[110],"is":[111],"required":[112],"optimise":[114],"use":[116],"WGS":[118],"public":[120],"health":[121],"management":[122,137],"TB.":[124],"Funding:":[125],"The":[126],"Victorian":[127,143,160],"Tuberculosis":[128,161],"Program":[129],"receives":[130],"block":[131],"funding":[132,149],"activities":[134],"including":[135],"contact":[139],"tracing":[140],"Department":[144],"Health.":[146],"No":[147],"specific":[148],"this":[151],"report":[152,179],"received":[154],"manuscript":[156],"authors":[157],"Program,":[162],"funders":[165],"had":[166],"no":[167],"role":[168],"study":[171],"design,":[172],"data":[173,175],"collection,":[174],"analysis,":[176],"interpretation":[177],"writing.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6}],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2022-08-25T00:00:00"}