{"id":"https://openalex.org/W4291152247","doi":"https://doi.org/10.3390/v14081758","title":"Molecular Epidemiology and Evolutionary Analysis of Avian Influenza A(H5) Viruses Circulating in Egypt, 2019\u20132021","display_name":"Molecular Epidemiology and Evolutionary Analysis of Avian Influenza A(H5) Viruses Circulating in Egypt, 2019\u20132021","publication_year":2022,"publication_date":"2022-08-11","ids":{"openalex":"https://openalex.org/W4291152247","doi":"https://doi.org/10.3390/v14081758","pmid":"https://pubmed.ncbi.nlm.nih.gov/36016379","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/9415572"},"language":"en","primary_location":{"id":"doi:10.3390/v14081758","doi":"https://doi.org/10.3390/v14081758","is_oa":true,"landing_page_url":"https://doi.org/10.3390/v14081758","pdf_url":"https://www.mdpi.com/1999-4915/14/8/1758/pdf?version=1660537218","source":{"id":"https://openalex.org/S55776271","display_name":"Viruses","issn_l":"1999-4915","issn":["1999-4915"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4915/14/8/1758/pdf?version=1660537218","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053133622","display_name":"Naglaa Mohammed Hagag","orcid":"https://orcid.org/0000-0002-2598-3264","observed_orcids":["https://orcid.org/0000-0002-2598-3264"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Naglaa M. Hagag","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047894464","display_name":"Nahed Yehia","orcid":"https://orcid.org/0000-0002-2823-6467","observed_orcids":["https://orcid.org/0000-0002-2823-6467"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Nahed Yehia","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":"https://orcid.org/0000-0002-2823-6467","affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048944886","display_name":"Mohamed H. El-Husseiny","orcid":"https://orcid.org/0000-0003-1571-0518","observed_orcids":["https://orcid.org/0000-0003-1571-0518"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Mohamed H. El-Husseiny","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011041954","display_name":"Amany Adel","orcid":"https://orcid.org/0000-0003-3462-667X","observed_orcids":["https://orcid.org/0000-0003-3462-667X"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Amany Adel","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062171563","display_name":"Azhar G. Shalaby","orcid":"https://orcid.org/0000-0003-4126-4734","observed_orcids":["https://orcid.org/0000-0003-4126-4734"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Azhar G. Shalaby","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086858367","display_name":"Neveen Rabie","orcid":"https://orcid.org/0000-0002-2006-3629","observed_orcids":["https://orcid.org/0000-0002-2006-3629"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Neveen Rabie","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101663153","display_name":"Mohamed Samy","orcid":"https://orcid.org/0000-0002-5406-112X","observed_orcids":["https://orcid.org/0000-0002-5406-112X"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Mohamed Samy","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070541317","display_name":"Motaz Mohamed","orcid":"https://orcid.org/0000-0002-8983-0814","observed_orcids":["https://orcid.org/0000-0002-8983-0814"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Motaz Mohamed","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111062367","display_name":"Amal S. A. El Oksh","orcid":"https://orcid.org/0000-0002-0739-9275","observed_orcids":["https://orcid.org/0000-0002-0739-9275"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Amal S. A. El-Oksh","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Abdullah Selim","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Abdullah Selim","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076093419","display_name":"Abdel-Satar Arafa","orcid":"https://orcid.org/0000-0001-6370-2526","observed_orcids":["https://orcid.org/0000-0001-6370-2526"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Abdel-Satar Arafa","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081863058","display_name":"Samah Eid","orcid":"https://orcid.org/0000-0002-5947-2438","observed_orcids":["https://orcid.org/0000-0002-5947-2438"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Samah Eid","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014525880","display_name":"Momtaz Abdelhady Shahein","orcid":"https://orcid.org/0000-0003-0221-8209","observed_orcids":["https://orcid.org/0000-0003-0221-8209"]},"institutions":[{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Momtaz A. Shahein","raw_affiliation_strings":["Virology Department, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virology Department, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087116077","display_name":"Mahmoud M. Naguib","orcid":"https://orcid.org/0000-0001-6876-8903","observed_orcids":["https://orcid.org/0000-0001-6876-8903"]},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I4210165448","display_name":"Agricultural Research Center","ror":"https://ror.org/05hcacp57","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210165448"]}],"countries":["EG","SE"],"is_corresponding":true,"raw_author_name":"Mahmoud M. Naguib","raw_affiliation_strings":["Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, 75121 Uppsala, Sweden"],"raw_orcid":"https://orcid.org/0000-0001-6876-8903","affiliations":[{"raw_affiliation_string":"Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Agriculture Research Center, Giza 12618, Egypt","institution_ids":["https://openalex.org/I4210165448"]},{"raw_affiliation_string":"Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, 75121 Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5087116077"],"corresponding_institution_ids":["https://openalex.org/I123387679","https://openalex.org/I4210165448"],"apc_list":{"value":2400,"currency":"CHF","value_usd":2513},"apc_paid":{"value":2400,"currency":"CHF","value_usd":2513},"fwci":3.1201,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.9263855,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"14","issue":"8","first_page":"1758","last_page":"1758"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11135","display_name":"Virology and Viral Diseases","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-epidemiology","display_name":"molecular epidemiology","score":0.7960000038146973},{"id":"https://openalex.org/keywords/molecular-evolution","display_name":"molecular evolution","score":0.8299999833106995},{"id":"https://openalex.org/keywords/clade-2-3-4-4b","display_name":"clade 2.3.4.4b","score":0.9679999947547913},{"id":"https://openalex.org/keywords/h5n1","display_name":"H5N1","score":0.8259999752044678},{"id":"https://openalex.org/keywords/poultry-surveillance","display_name":"poultry surveillance","score":0.6439999938011169},{"id":"https://openalex.org/keywords/live-bird-markets","display_name":"live bird markets","score":0.8130000233650208},{"id":"https://openalex.org/keywords/seasonal-patterns","display_name":"seasonal patterns","score":0.5720000267028809},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.7250000238418579},{"id":"https://openalex.org/keywords/bayesian-phylogeography","display_name":"Bayesian phylogeography","score":0.6899999976158142},{"id":"https://openalex.org/keywords/divergence-time-estimation","display_name":"divergence time estimation","score":0.9449999928474426},{"id":"https://openalex.org/keywords/egypt","display_name":"Egypt","score":0.503000020980835}],"concepts":[{"id":"https://openalex.org/C519248777","wikidata":"https://www.wikidata.org/wiki/Q160122","display_name":"Influenza A virus subtype H5N1","level":3,"score":0.9006391167640686},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.7126723527908325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6889067888259888},{"id":"https://openalex.org/C3019819676","wikidata":"https://www.wikidata.org/wiki/Q43987","display_name":"Highly pathogenic","level":4,"score":0.6598539352416992},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5643404722213745},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5417836308479309},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.5042084455490112},{"id":"https://openalex.org/C97669555","wikidata":"https://www.wikidata.org/wiki/Q4118435","display_name":"Molecular epidemiology","level":4,"score":0.4980766773223877},{"id":"https://openalex.org/C8769409","wikidata":"https://www.wikidata.org/wiki/Q2066554","display_name":"Viral evolution","level":4,"score":0.49014410376548767},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4813728630542755},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.42238667607307434},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11100900173187256},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.10444977879524231},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09986540675163269},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0668560266494751},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004534","descriptor_name":"Egypt","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D005585","descriptor_name":"Influenza in Birds","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011200","descriptor_name":"Poultry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053124","descriptor_name":"Influenza A Virus, H5N1 Subtype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.3390/v14081758","doi":"https://doi.org/10.3390/v14081758","is_oa":true,"landing_page_url":"https://doi.org/10.3390/v14081758","pdf_url":"https://www.mdpi.com/1999-4915/14/8/1758/pdf?version=1660537218","source":{"id":"https://openalex.org/S55776271","display_name":"Viruses","issn_l":"1999-4915","issn":["1999-4915"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"journal-article"},{"id":"pmid:36016379","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36016379","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9415572","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9415572/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"Text"},{"id":"pmh:oai:DiVA.org:uu-494307","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-494307","pdf_url":null,"source":{"id":"https://openalex.org/S4306402042","display_name":"Uppsala University Publications (Uppsala University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I123387679","host_organization_name":"Uppsala University","host_organization_lineage":["https://openalex.org/I123387679"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:2f1114721ab142a78aa3ff2c6c7d7cf4","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/2f1114721ab142a78aa3ff2c6c7d7cf4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Viruses, Vol 14, Iss 8, p 1758 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/v14081758","doi":"https://doi.org/10.3390/v14081758","is_oa":true,"landing_page_url":"https://doi.org/10.3390/v14081758","pdf_url":"https://www.mdpi.com/1999-4915/14/8/1758/pdf?version=1660537218","source":{"id":"https://openalex.org/S55776271","display_name":"Viruses","issn_l":"1999-4915","issn":["1999-4915"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Viruses","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4043000042438507,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1570179604","display_name":null,"funder_award_id":"LPP1-007","funder_id":"https://openalex.org/F4320325677","funder_display_name":"Science for Life Laboratory"},{"id":"https://openalex.org/G4456772358","display_name":null,"funder_award_id":"CTS 21:1618","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G5575481359","display_name":null,"funder_award_id":"LPP1-007","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G7038841510","display_name":null,"funder_award_id":"M2250","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G7990722264","display_name":"Pandemic preparedness pipelines: Using the experiences of past pandemics to move towards a streamlined One Health collaboration strategy with improved diagnostics in Egypt.","funder_award_id":"2021-05584","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"}],"funders":[{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320325677","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4291152247.pdf","grobid_xml":"https://content.openalex.org/works/W4291152247.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1969867599","https://openalex.org/W1976852215","https://openalex.org/W2002344455","https://openalex.org/W2056298444","https://openalex.org/W2072846173","https://openalex.org/W2077124055","https://openalex.org/W2091956821","https://openalex.org/W2111647009","https://openalex.org/W2119982825","https://openalex.org/W2160378127","https://openalex.org/W2413685031","https://openalex.org/W2468716399","https://openalex.org/W2609356370","https://openalex.org/W2738949405","https://openalex.org/W2753720457","https://openalex.org/W2772519205","https://openalex.org/W2781938185","https://openalex.org/W2789981064","https://openalex.org/W2791108672","https://openalex.org/W2792125617","https://openalex.org/W2915488108","https://openalex.org/W2952199890","https://openalex.org/W2957113378","https://openalex.org/W2973962572","https://openalex.org/W2981548452","https://openalex.org/W2990793558","https://openalex.org/W2992469016","https://openalex.org/W3015816017","https://openalex.org/W3027789301","https://openalex.org/W3048266542","https://openalex.org/W3109405109","https://openalex.org/W3120584823","https://openalex.org/W3163560394","https://openalex.org/W3187837368","https://openalex.org/W4221126337","https://openalex.org/W4283207056","https://openalex.org/W4283729269","https://openalex.org/W4297833300","https://openalex.org/W6746333287","https://openalex.org/W6778302311"],"related_works":["https://openalex.org/W4414167463","https://openalex.org/W3185946864","https://openalex.org/W2018665135","https://openalex.org/W4221126337","https://openalex.org/W2118592984","https://openalex.org/W4389588899","https://openalex.org/W4411247924","https://openalex.org/W2010648327","https://openalex.org/W2084682393","https://openalex.org/W1843268593"],"abstract_inverted_index":{"The":[0,111],"highly":[1],"pathogenic":[2],"avian":[3,239],"influenza":[4,240],"(HPAI)":[5],"H5N8":[6,41,58,104,120,174,194,204,224],"virus":[7,19,42,146,195],"was":[8,67,150],"first":[9],"detected":[10],"in":[11,13,34,45,87,128,131,152,183,226,242],"Egypt":[12,88,227],"late":[14],"2016.":[15],"Since":[16],"then,":[17],"the":[18,28,39,48,55,108,114,143,153,180,191,197,202,210,216,234,238],"has":[20],"spread":[21],"rapidly":[22],"among":[23,179],"different":[24,78,129],"poultry":[25,79,154,181],"sectors,":[26],"becoming":[27],"dominant":[29],"HPAI":[30,40,57,119,144,173,193,223],"H5":[31],"subtype":[32],"reported":[33,44],"Egypt.":[35,184,243],"Different":[36],"genotypes":[37,168],"of":[38,54,113,122,142,147,172,201,206,212,222,233,237],"were":[43,98,176],"Egypt;":[46],"however,":[47],"geographic":[49],"patterns":[50],"and":[51,95,138,161,170,220,228],"molecular":[52,186],"evolution":[53,221],"Egyptian":[56,192],"viruses":[59,121,175,200,205,225,241],"are":[60],"still":[61],"unclear.":[62],"Here,":[63],"extensive":[64],"epidemiological":[65],"surveillance":[66,116],"conducted,":[68],"including":[69],"more":[70],"than":[71],"half":[72],"a":[73],"million":[74],"samples":[75],"collected":[76],"from":[77,84],"sectors":[80,182],"(farms/backyards/live":[81],"bird":[82],"markets)":[83],"all":[85],"governorates":[86],"during":[89,107,156],"2019-2021.":[90,157],"In":[91,158,208],"addition,":[92,159],"genetic":[93,235],"characterization":[94],"evolutionary":[96],"analyses":[97,163],"performed":[99],"using":[100],"47":[101],"selected":[102],"positive":[103],"isolates":[105],"obtained":[106],"same":[109],"period.":[110],"result":[112],"conducted":[115],"showed":[117],"that":[118,165,190],"clade":[123,148],"2.3.4.4b":[124],"continue":[125],"to":[126],"circulate":[127],"locations":[130],"Egypt,":[132],"with":[133],"an":[134],"obvious":[135],"seasonal":[136],"pattern,":[137],"no":[139],"further":[140],"detection":[141],"H5N1":[145],"2.2.1.2":[149],"observed":[151],"population":[155],"phylogenetic":[160],"Bayesian":[162],"revealed":[164],"two":[166],"major":[167],"(G5":[169],"G6)":[171],"continually":[177],"expanding":[178],"Notably,":[185],"dating":[187],"analysis":[188],"suggested":[189],"is":[196],"potential":[198],"ancestral":[199],"European":[203],"2020-2021.":[207],"summary,":[209],"data":[211],"this":[213],"study":[214],"highlight":[215],"current":[217],"epidemiology,":[218],"diversity,":[219],"call":[229],"for":[230],"continuous":[231],"monitoring":[232],"features":[236]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2022-08-13T00:00:00"}
