{"id":"https://openalex.org/W4289929324","doi":"https://doi.org/10.1016/j.jia.2022.08.032","title":"Identifying candidate genes involved in trichome formation on carrot stems by transcriptome profiling and resequencing","display_name":"Identifying candidate genes involved in trichome formation on carrot stems by transcriptome profiling and resequencing","publication_year":2022,"publication_date":"2022-08-06","ids":{"openalex":"https://openalex.org/W4289929324","doi":"https://doi.org/10.1016/j.jia.2022.08.032"},"language":"en","primary_location":{"id":"doi:10.1016/j.jia.2022.08.032","doi":"https://doi.org/10.1016/j.jia.2022.08.032","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jia.2022.08.032","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2095311922001101/pdf","source":{"id":"https://openalex.org/S2491286908","display_name":"Journal of Integrative Agriculture","issn_l":"2095-3119","issn":["2095-3119","2352-3425"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Agriculture","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.sciencedirect.com/science/article/pii/S2095311922001101/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001756137","display_name":"Zhe WU","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhe WU","raw_affiliation_strings":["College of Horticulture, Shanxi Agricultural University, Taigu 030801, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Shanxi Agricultural University, Taigu 030801, P.R.China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101802621","display_name":"Xuan Yang","orcid":"https://orcid.org/0000-0002-7743-3731","observed_orcids":["https://orcid.org/0000-0002-7743-3731"]},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan YANG","raw_affiliation_strings":["College of Horticulture, Shanxi Agricultural University, Taigu 030801, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Shanxi Agricultural University, Taigu 030801, P.R.China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031184049","display_name":"Yu-xuan ZHAO","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-xuan ZHAO","raw_affiliation_strings":["College of Horticulture, Shanxi Agricultural University, Taigu 030801, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Horticulture, Shanxi Agricultural University, Taigu 030801, P.R.China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"last","author":{"id":null,"display_name":"Li JIA","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210110961","display_name":"Anhui Academy of Agricultural Sciences","ror":"https://ror.org/01pw5qp76","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210110961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Li JIA","raw_affiliation_strings":["Key Laboratory of Genetic Improvement and Ecophysiology of Horticultural Crop of Anhui Province, Institute of Horticulture, Anhui Academy of Agricultural Sciences, Hefei 230001, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Genetic Improvement and Ecophysiology of Horticultural Crop of Anhui Province, Institute of Horticulture, Anhui Academy of Agricultural Sciences, Hefei 230001, P.R.China","institution_ids":["https://openalex.org/I4210110961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001756137"],"corresponding_institution_ids":["https://openalex.org/I119868032","https://openalex.org/I4210110961"],"apc_list":{"value":1000,"currency":"USD","value_usd":1000},"apc_paid":{"value":1000,"currency":"USD","value_usd":1000},"fwci":0.2754,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.5174145,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":95},"biblio":{"volume":"21","issue":"12","first_page":"3589","last_page":"3599"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12161","display_name":"Plant Surface Properties and Treatments","score":0.015200000256299973,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12828","display_name":"Plant Genetic and Mutation Studies","score":0.011300000362098217,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trichome-formation","display_name":"trichome formation","score":0.8420000076293945},{"id":"https://openalex.org/keywords/carrot","display_name":"carrot","score":0.9240000247955322},{"id":"https://openalex.org/keywords/nonsynonymous-mutations","display_name":"non-synonymous mutations","score":0.8100000023841858},{"id":"https://openalex.org/keywords/candidate-genes","display_name":"candidate genes","score":0.7409999966621399},{"id":"https://openalex.org/keywords/differentially-expressed-genes","display_name":"differentially expressed genes","score":0.8100000023841858},{"id":"https://openalex.org/keywords/transcription-factors","display_name":"transcription factors","score":0.7519999742507935},{"id":"https://openalex.org/keywords/trichome-morphology","display_name":"trichome morphology","score":0.6150000095367432},{"id":"https://openalex.org/keywords/stem-trichomes","display_name":"stem trichomes","score":0.5479999780654907}],"concepts":[{"id":"https://openalex.org/C56221022","wikidata":"https://www.wikidata.org/wiki/Q1125215","display_name":"Trichome","level":2,"score":0.9868683815002441},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7896591424942017},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7467789649963379},{"id":"https://openalex.org/C149904235","wikidata":"https://www.wikidata.org/wiki/Q7049620","display_name":"Nonsynonymous substitution","level":4,"score":0.6724638342857361},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6110406517982483},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.48820072412490845},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44449061155319214},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.4313291907310486},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17629334330558777},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.12481272220611572}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.jia.2022.08.032","doi":"https://doi.org/10.1016/j.jia.2022.08.032","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jia.2022.08.032","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2095311922001101/pdf","source":{"id":"https://openalex.org/S2491286908","display_name":"Journal of Integrative Agriculture","issn_l":"2095-3119","issn":["2095-3119","2352-3425"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Agriculture","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:57b936b17cdc406ea8cb34480fda68ec","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/57b936b17cdc406ea8cb34480fda68ec","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Agriculture, Vol 21, Iss 12, Pp 3589-3599 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.jia.2022.08.032","doi":"https://doi.org/10.1016/j.jia.2022.08.032","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jia.2022.08.032","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2095311922001101/pdf","source":{"id":"https://openalex.org/S2491286908","display_name":"Journal of Integrative Agriculture","issn_l":"2095-3119","issn":["2095-3119","2352-3425"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Agriculture","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9208999872207642,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1998769298","display_name":null,"funder_award_id":"2021-066","funder_id":"https://openalex.org/F4320321884","funder_display_name":"Shanxi Scholarship Council of China"},{"id":"https://openalex.org/G491348734","display_name":null,"funder_award_id":"201903D221063","funder_id":"https://openalex.org/F4320321884","funder_display_name":"Shanxi Scholarship Council of China"},{"id":"https://openalex.org/G5375053452","display_name":null,"funder_award_id":"31601751","funder_id":"https://openalex.org/F4320321884","funder_display_name":"Shanxi Scholarship Council of China"},{"id":"https://openalex.org/G6628300316","display_name":null,"funder_award_id":"2016ZZ02","funder_id":"https://openalex.org/F4320321884","funder_display_name":"Shanxi Scholarship Council of China"},{"id":"https://openalex.org/G7302908496","display_name":null,"funder_award_id":"20210302123412","funder_id":"https://openalex.org/F4320321884","funder_display_name":"Shanxi Scholarship Council of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321884","display_name":"Shanxi Scholarship Council of China","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320328120","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362"},{"id":"https://openalex.org/F4320336035","display_name":"Shanxi Provincial Key Research and Development Project","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4289929324.pdf","grobid_xml":"https://content.openalex.org/works/W4289929324.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W59020042","https://openalex.org/W1502072943","https://openalex.org/W1952994533","https://openalex.org/W1966289182","https://openalex.org/W1977760850","https://openalex.org/W1980007971","https://openalex.org/W1995971407","https://openalex.org/W2002520494","https://openalex.org/W2014733990","https://openalex.org/W2026657727","https://openalex.org/W2031809905","https://openalex.org/W2033833048","https://openalex.org/W2068502244","https://openalex.org/W2095424461","https://openalex.org/W2103441770","https://openalex.org/W2107593640","https://openalex.org/W2137777746","https://openalex.org/W2141209126","https://openalex.org/W2152198063","https://openalex.org/W2154778106","https://openalex.org/W2161179461","https://openalex.org/W2161723152","https://openalex.org/W2163106310","https://openalex.org/W2164388273","https://openalex.org/W2166057645","https://openalex.org/W2166671294","https://openalex.org/W2401904073","https://openalex.org/W2473995749","https://openalex.org/W2583237652","https://openalex.org/W2783256249","https://openalex.org/W2797896710","https://openalex.org/W2880506738","https://openalex.org/W2897671570","https://openalex.org/W2903249578","https://openalex.org/W2954602596","https://openalex.org/W3002015385","https://openalex.org/W3009073762","https://openalex.org/W3176208644"],"related_works":["https://openalex.org/W2028348195","https://openalex.org/W1967987810","https://openalex.org/W746239651","https://openalex.org/W3201034599","https://openalex.org/W2144498618","https://openalex.org/W3171648237","https://openalex.org/W7098627598","https://openalex.org/W4212781832","https://openalex.org/W4407843659","https://openalex.org/W3162403061"],"abstract_inverted_index":{"Trichomes":[0,17],"are":[1,39,192],"specialized":[2],"structures":[3],"developed":[4],"from":[5],"epidermal":[6],"cells":[7],"and":[8,14,31,50,60,72,76,83,129,131,153,163,167,184,200,206],"can":[9],"protect":[10],"plants":[11],"against":[12],"biotic":[13],"abiotic":[15],"stresses.":[16],"cover":[18],"carrots":[19],"during":[20],"the":[21,25,28,35,55,111,114,161],"generative":[22],"phase.":[23],"However,":[24],"morphology":[26],"of":[27,37,62,66,93,113],"carrot":[29,46,87,211],"trichomes":[30,38,47,74,85,115,208],"candidate":[32,195],"genes":[33,96,137,172,191,196],"controlling":[34],"formation":[36],"still":[40],"unclear.":[41],"This":[42],"study":[43],"found":[44,168],"that":[45,169,173],"were":[48,102,123,174],"non-glandular":[49],"unbranched":[51],"hairs":[52],"distributed":[53],"on":[54,86,116,210],"stem,":[56],"leaf,":[57],"petiole,":[58],"pedicel,":[59],"seed":[61],"carrot.":[63],"Resequencing":[64],"analysis":[65],"a":[67,77],"trichome":[68],"mutant":[69],"with":[70,81,155],"sparse":[71],"short":[73,207],"(sst)":[75],"wild":[78],"type":[79],"(wt)":[80],"long":[82,126],"dense":[84],"stems":[88,212],"was":[89],"conducted.":[90],"A":[91],"total":[92],"15":[94],"396":[95],"containing":[97,181],"nonsynonymous":[98,182,198],"mutations":[99,183,199],"in":[100,187,204,213],"sst":[101,130],"obtained,":[103],"including":[104,139],"42":[105],"trichome-related":[106,141,171],"genes.":[107,142],"We":[108,158],"also":[109],"analyzed":[110],"transcriptome":[112,164],"secondary":[117,121],"branches":[118,122],"when":[119],"these":[120,190],"10":[124],"cm":[125],"between":[127],"wt":[128],"obtained":[132],"6":[133],"576":[134],"differentially":[135],"expressed":[136],"(DEGs),":[138],"24":[140],"qRT-PCR":[143],"validation":[144],"exhibited":[145],"three":[146],"significantly":[147,151,185],"up-regulated":[148],"DEGs,":[149],"20":[150],"down-regulated,":[152],"one":[154],"no":[156],"difference.":[157],"considered":[159],"both":[160],"resequencing":[162],"sequencing":[165],"analyses":[166],"12":[170],"grouped":[175],"into":[176],"five":[177],"transcription":[178],"factor":[179],"families":[180],"down-regulated":[186],"sst.":[188,214],"Therefore,":[189],"potentially":[193],"promising":[194],"whose":[197],"down-regulation":[201],"may":[202],"result":[203],"scarce":[205],"mutation":[209]},"counts_by_year":[{"year":2023,"cited_by_count":2}],"updated_date":"2026-09-27T08:07:27.782135","created_date":"2022-08-06T00:00:00"}