{"id":"https://openalex.org/W4289745142","doi":"https://doi.org/10.3389/fsoil.2022.945888","title":"Spatial, temporal and technical variability in the diversity of prokaryotes and fungi in agricultural soils","display_name":"Spatial, temporal and technical variability in the diversity of prokaryotes and fungi in agricultural soils","publication_year":2022,"publication_date":"2022-08-04","ids":{"openalex":"https://openalex.org/W4289745142","doi":"https://doi.org/10.3389/fsoil.2022.945888"},"language":"en","primary_location":{"id":"doi:10.3389/fsoil.2022.945888","doi":"https://doi.org/10.3389/fsoil.2022.945888","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fsoil.2022.945888","pdf_url":"https://www.frontiersin.org/articles/10.3389/fsoil.2022.945888/pdf","source":{"id":"https://openalex.org/S4210190589","display_name":"Frontiers in Soil Science","issn_l":"2673-8619","issn":["2673-8619"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","norway-1"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Soil Science","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fsoil.2022.945888/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049110384","display_name":"Thomas Jeanne","orcid":"https://orcid.org/0000-0001-6230-5369","observed_orcids":["https://orcid.org/0000-0001-6230-5369"]},"institutions":[{"id":"https://openalex.org/I4210136451","display_name":"Institut de Recherche et de D\u00e9veloppement en Agroenvironnement","ror":"https://ror.org/03snehy11","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210136451"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Thomas Jeanne","raw_affiliation_strings":["Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Qu\u00e9bec, QC, Canada","Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Qu\u00e9bec, QC, Canada","institution_ids":["https://openalex.org/I4210136451"]},{"raw_affiliation_string":"Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Canada","institution_ids":["https://openalex.org/I4210136451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016921502","display_name":"Jo\u00ebl D\u2019Astous-Pag\u00e9","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210136451","display_name":"Institut de Recherche et de D\u00e9veloppement en Agroenvironnement","ror":"https://ror.org/03snehy11","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210136451"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jo\u00ebl D\u2019Astous-Pag\u00e9","raw_affiliation_strings":["Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Qu\u00e9bec, QC, Canada","Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Qu\u00e9bec, QC, Canada","institution_ids":["https://openalex.org/I4210136451"]},{"raw_affiliation_string":"Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Canada","institution_ids":["https://openalex.org/I4210136451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056611732","display_name":"Richard Hogue","orcid":"https://orcid.org/0000-0002-2768-0857","observed_orcids":["https://orcid.org/0000-0002-2768-0857"]},"institutions":[{"id":"https://openalex.org/I4210136451","display_name":"Institut de Recherche et de D\u00e9veloppement en Agroenvironnement","ror":"https://ror.org/03snehy11","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210136451"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Richard Hogue","raw_affiliation_strings":["Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Qu\u00e9bec, QC, Canada","Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Qu\u00e9bec, QC, Canada","institution_ids":["https://openalex.org/I4210136451"]},{"raw_affiliation_string":"Microbial ecology laboratory, Institut de Recherche et de D\u00e9veloppement en Agroenvironnement (IRDA), Canada","institution_ids":["https://openalex.org/I4210136451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5049110384"],"corresponding_institution_ids":["https://openalex.org/I4210136451"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":1.6216,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.81625019,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"2","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.4507000148296356,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.4507000148296356,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10004","display_name":"Soil Carbon and Nitrogen Dynamics","score":0.42329999804496765,"subfield":{"id":"https://openalex.org/subfields/1111","display_name":"Soil Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.09539999812841415,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/soil-microbial-diversity","display_name":"soil microbial diversity","score":0.8190000057220459},{"id":"https://openalex.org/keywords/prokaryotes","display_name":"prokaryotes","score":0.7739999890327454},{"id":"https://openalex.org/keywords/fungi","display_name":"fungi","score":0.8149999976158142},{"id":"https://openalex.org/keywords/technical-variation","display_name":"technical variability","score":0.7379999756813049},{"id":"https://openalex.org/keywords/spatial-variability","display_name":"spatial variability","score":0.9769999980926514},{"id":"https://openalex.org/keywords/temporal-variation","display_name":"temporal variation","score":1.0},{"id":"https://openalex.org/keywords/soil-microbiome","display_name":"soil microbiome","score":0.8510000109672546},{"id":"https://openalex.org/keywords/crop-management","display_name":"crop management","score":0.6830000281333923},{"id":"https://openalex.org/keywords/potato","display_name":"potato","score":0.5989999771118164},{"id":"https://openalex.org/keywords/grassland","display_name":"grassland","score":0.9950000047683716},{"id":"https://openalex.org/keywords/soil-dna-extraction","display_name":"soil DNA extraction","score":0.8659999966621399},{"id":"https://openalex.org/keywords/sampling-variability","display_name":"sampling variability","score":0.40299999713897705},{"id":"https://openalex.org/keywords/shannon-diversity-index","display_name":"Shannon diversity index","score":0.6029999852180481},{"id":"https://openalex.org/keywords/unifrac-distance","display_name":"UniFrac distance","score":0.8550000190734863}],"concepts":[{"id":"https://openalex.org/C94747663","wikidata":"https://www.wikidata.org/wiki/Q7574086","display_name":"Spatial variability","level":2,"score":0.679625928401947},{"id":"https://openalex.org/C159750122","wikidata":"https://www.wikidata.org/wiki/Q96621023","display_name":"Soil water","level":2,"score":0.6625480651855469},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.5973686575889587},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.5414575934410095},{"id":"https://openalex.org/C151437367","wikidata":"https://www.wikidata.org/wiki/Q7884646","display_name":"UniFrac","level":4,"score":0.5156782865524292},{"id":"https://openalex.org/C2775835988","wikidata":"https://www.wikidata.org/wiki/Q1006733","display_name":"Grassland","level":2,"score":0.4733978509902954},{"id":"https://openalex.org/C118518473","wikidata":"https://www.wikidata.org/wiki/Q11451","display_name":"Agriculture","level":2,"score":0.4331142008304596},{"id":"https://openalex.org/C30968088","wikidata":"https://www.wikidata.org/wiki/Q1230601","display_name":"Diversity index","level":3,"score":0.41866442561149597},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3676142990589142},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.357774555683136},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.3388804793357849},{"id":"https://openalex.org/C159390177","wikidata":"https://www.wikidata.org/wiki/Q9161265","display_name":"Soil science","level":1,"score":0.2853206396102905},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.15523594617843628},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14835575222969055},{"id":"https://openalex.org/C53565203","wikidata":"https://www.wikidata.org/wiki/Q17146659","display_name":"Species richness","level":2,"score":0.13474634289741516},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0755317211151123},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3389/fsoil.2022.945888","doi":"https://doi.org/10.3389/fsoil.2022.945888","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fsoil.2022.945888","pdf_url":"https://www.frontiersin.org/articles/10.3389/fsoil.2022.945888/pdf","source":{"id":"https://openalex.org/S4210190589","display_name":"Frontiers in Soil Science","issn_l":"2673-8619","issn":["2673-8619"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","norway-1"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Soil Science","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:003edd3a6f4f45d089e17c968ce54961","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/003edd3a6f4f45d089e17c968ce54961","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Soil Science, Vol 2 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fsoil.2022.945888","doi":"https://doi.org/10.3389/fsoil.2022.945888","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fsoil.2022.945888","pdf_url":"https://www.frontiersin.org/articles/10.3389/fsoil.2022.945888/pdf","source":{"id":"https://openalex.org/S4210190589","display_name":"Frontiers in Soil Science","issn_l":"2673-8619","issn":["2673-8619"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","norway-1"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Soil Science","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.9208999872207642},{"id":"https://metadata.un.org/sdg/15","display_name":"Life on land","score":0.7605999708175659}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310800","display_name":"Minist\u00e8re de l'Agriculture, des P\u00eacheries et de l'Alimentation","ror":"https://ror.org/04mqc6b03"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4289745142.pdf","grobid_xml":"https://content.openalex.org/works/W4289745142.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W190681677","https://openalex.org/W1922909364","https://openalex.org/W1952026831","https://openalex.org/W1995875735","https://openalex.org/W2002211554","https://openalex.org/W2036897871","https://openalex.org/W2038036959","https://openalex.org/W2068218282","https://openalex.org/W2069638100","https://openalex.org/W2073497355","https://openalex.org/W2083532638","https://openalex.org/W2091627137","https://openalex.org/W2100742794","https://openalex.org/W2113925621","https://openalex.org/W2133308090","https://openalex.org/W2144388854","https://openalex.org/W2153755764","https://openalex.org/W2161163382","https://openalex.org/W2401404581","https://openalex.org/W2510474575","https://openalex.org/W2512109611","https://openalex.org/W2544682192","https://openalex.org/W2626376206","https://openalex.org/W2763273291","https://openalex.org/W2766656369","https://openalex.org/W2782119243","https://openalex.org/W2783192416","https://openalex.org/W2793870188","https://openalex.org/W2809877221","https://openalex.org/W2886594856","https://openalex.org/W2891134622","https://openalex.org/W2894325618","https://openalex.org/W2896268397","https://openalex.org/W2911619442","https://openalex.org/W2924475544","https://openalex.org/W2962091781","https://openalex.org/W2963276645","https://openalex.org/W2971656115","https://openalex.org/W3001320690","https://openalex.org/W3015990045","https://openalex.org/W3044902219","https://openalex.org/W3097782415","https://openalex.org/W3112920764","https://openalex.org/W3135280038","https://openalex.org/W3156094511","https://openalex.org/W3165615104","https://openalex.org/W3187079899"],"related_works":["https://openalex.org/W4406821906","https://openalex.org/W2038036959","https://openalex.org/W7098711695","https://openalex.org/W4406643794","https://openalex.org/W2913936000","https://openalex.org/W4220964837","https://openalex.org/W1966956693","https://openalex.org/W2802335036","https://openalex.org/W2302501534","https://openalex.org/W7165648318"],"abstract_inverted_index":{"Several":[0],"studies":[1],"have":[2],"shown":[3],"that":[4,21,67,102,230],"Illumina":[5],"MiSeq":[6],"high-throughput":[7],"sequencing":[8,153],"can":[9,103],"be":[10,50,104],"used":[11,105],"to":[12,54,57,109,126,188],"measure":[13],"the":[14,59,65,79,88,118,185,199,239,247,255,260],"diversity":[15,256],"of":[16,30,43,61,81,84,99,120,146,155,207,210,219,246,257],"prokaryotes":[17,90,224],"and":[18,36,52,64,91,122,137,151,212,214,221,225,241,259,269],"fungal":[19,92],"communities":[20],"provide":[22],"ecosystem":[23],"functions":[24],"in":[25,130,143,244],"agricultural":[26,37],"soils.":[27],"Pedoclimatic":[28],"properties":[29],"soils,":[31],"together":[32],"with":[33,204],"cropping":[34],"systems":[35],"management":[38,113,133],"practices,":[39],"are":[40],"major":[41],"drivers":[42],"soil":[44,89,148,164,200],"microbiome":[45],"diversity.":[46],"Their":[47],"effects":[48,63,80,119],"must":[49],"quantified":[51],"compared":[53],"technical":[55,85,100,128,193,231],"variability":[56,86,101,124,140,158,194,203,232,251],"improve":[58],"relevance":[60],"observed":[62,229],"indicators":[66],"may":[68],"result":[69],"from":[70],"them.":[71],"This":[72],"study":[73],"was":[74,141,159,196,233,252],"conducted:":[75],"1)":[76],"To":[77,95,116],"assess":[78,111],"three":[82,131,181],"sources":[83],"on":[87,180,267],"diversity;":[93],"2)":[94],"identify":[96],"a":[97,107,127,144,205,215,264],"source":[98,154],"as":[106],"threshold":[108,129,195],"better":[110],"crop":[112,132,261],"effects;":[114],"3)":[115],"evaluate":[117,189],"spatial":[121,240,270],"temporal":[123,190,242,268],"compare":[125],"contexts,":[134],"potato,":[135],"corn/soybean":[136],"grassland.":[138],"Technical":[139],"evaluated":[142,160],"basis":[145],"sampling,":[147],"DNA":[149,201],"extraction":[150,202],"amplicon":[152],"variability.":[156,191,271],"Spatial":[157],"using":[161],"composite":[162],"bulk":[163],"cores":[165],"at":[166],"four":[167],"sampling":[168,182],"points":[169],"covering":[170],"2500":[171],"m\u00b2":[172],"per":[173],"field.":[174],"Geolocated":[175],"soils":[176],"were":[177],"also":[178],"collected":[179],"dates":[183],"during":[184],"growing":[186],"season":[187],"A":[192],"determined":[197],"for":[198,223,254],"delta":[206],"Shannon":[208],"index":[209],"0.142":[211],"0.390":[213],"weighted":[216],"UniFrac":[217],"distance":[218],"0.081":[220],"0.364":[222],"fungi,":[226],"respectively.":[227],"We":[228],"consistently":[234],"similar":[235],"or":[236],"lower":[237],"than":[238],"variabilities":[243],"each":[245],"microbial":[248],"communities.":[249],"Observed":[250],"greater":[253],"fungi":[258],"system":[262],"has":[263],"strong":[265],"effect":[266]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2022-08-04T00:00:00"}