{"id":"https://openalex.org/W42890858","doi":null,"title":"Effects of Phylogeny on Structural Correlations of Vertebrate Eyes","display_name":"Effects of Phylogeny on Structural Correlations of Vertebrate Eyes","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W42890858","mag":"42890858"},"language":"en","primary_location":{"id":"pmh:oai:scholarship.claremont.edu:scripps_theses-1377","doi":null,"is_oa":true,"landing_page_url":"https://scholarship.claremont.edu/scripps_theses/346","pdf_url":"https://scholarship.claremont.edu/cgi/viewcontent.cgi?article=1377&context=scripps_theses","source":{"id":"https://openalex.org/S4377196412","display_name":"Scholarship - Claremont (Claremont Colleges)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I872248612","host_organization_name":"Claremont Colleges","host_organization_lineage":["https://openalex.org/I872248612"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scripps Senior Theses","raw_type":"text"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://scholarship.claremont.edu/cgi/viewcontent.cgi?article=1377&context=scripps_theses","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000283156","display_name":"Amanda Yl Jacobs","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I872248612","display_name":"Claremont Colleges","ror":"https://ror.org/03xaz7s88","country_code":"US","type":"education","lineage":["https://openalex.org/I872248612"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amanda Yl Jacobs","raw_affiliation_strings":["Claremont Colleges***"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Claremont Colleges***","institution_ids":["https://openalex.org/I872248612"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5000283156"],"corresponding_institution_ids":["https://openalex.org/I872248612"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.739300012588501,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.739300012588501,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.1266999989748001,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13100","display_name":"Comparative Animal Anatomy Studies","score":0.1096000000834465,"subfield":{"id":"https://openalex.org/subfields/2702","display_name":"Anatomy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/vertebrate-eye","display_name":"vertebrate eye","score":0.8410000205039978},{"id":"https://openalex.org/keywords/eye-structure","display_name":"eye structure","score":0.7279999852180481},{"id":"https://openalex.org/keywords/phylogenetic-comparative-analysis","display_name":"phylogenetic comparative analysis","score":0.8640000224113464},{"id":"https://openalex.org/keywords/phylogenetic-signal","display_name":"phylogenetic signal","score":0.843999981880188},{"id":"https://openalex.org/keywords/pagel-s-lambda","display_name":"Pagel's lambda","score":0.824999988079071},{"id":"https://openalex.org/keywords/trait-covariance","display_name":"trait covariance","score":0.4909999966621399},{"id":"https://openalex.org/keywords/soft-tissue","display_name":"soft tissue","score":0.3540000021457672},{"id":"https://openalex.org/keywords/hard-tissue","display_name":"hard tissue","score":0.9879999756813049},{"id":"https://openalex.org/keywords/time-calibrated-phylogeny","display_name":"time-calibrated phylogeny","score":0.7279999852180481}],"concepts":[{"id":"https://openalex.org/C2778961482","wikidata":"https://www.wikidata.org/wiki/Q25241","display_name":"Vertebrate","level":3,"score":0.7573957443237305},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6934873461723328},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5006372928619385},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43962329626083374},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.363766074180603},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.3634156584739685},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3270265758037567},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17649409174919128},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07664397358894348}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:scholarship.claremont.edu:scripps_theses-1377","doi":null,"is_oa":true,"landing_page_url":"https://scholarship.claremont.edu/scripps_theses/346","pdf_url":"https://scholarship.claremont.edu/cgi/viewcontent.cgi?article=1377&context=scripps_theses","source":{"id":"https://openalex.org/S4377196412","display_name":"Scholarship - Claremont (Claremont Colleges)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I872248612","host_organization_name":"Claremont Colleges","host_organization_lineage":["https://openalex.org/I872248612"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scripps Senior Theses","raw_type":"text"},{"id":"mag:42890858","doi":null,"is_oa":false,"landing_page_url":"https://scholarship.claremont.edu/cgi/viewcontent.cgi?article=1377&context=scripps_theses","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:scholarship.claremont.edu:scripps_theses-1377","doi":null,"is_oa":true,"landing_page_url":"https://scholarship.claremont.edu/scripps_theses/346","pdf_url":"https://scholarship.claremont.edu/cgi/viewcontent.cgi?article=1377&context=scripps_theses","source":{"id":"https://openalex.org/S4377196412","display_name":"Scholarship - Claremont (Claremont Colleges)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I872248612","host_organization_name":"Claremont Colleges","host_organization_lineage":["https://openalex.org/I872248612"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scripps Senior Theses","raw_type":"text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W42890858.pdf","grobid_xml":"https://content.openalex.org/works/W42890858.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1488393970","https://openalex.org/W1595395445","https://openalex.org/W1967157162","https://openalex.org/W1990221500","https://openalex.org/W2013410948","https://openalex.org/W2019735629","https://openalex.org/W2048806399","https://openalex.org/W2054239174","https://openalex.org/W2063699372","https://openalex.org/W2072020803","https://openalex.org/W2080804702","https://openalex.org/W2088262090","https://openalex.org/W2105395390","https://openalex.org/W2107555182","https://openalex.org/W2109628725","https://openalex.org/W2114525641","https://openalex.org/W2117066938","https://openalex.org/W2117368100","https://openalex.org/W2125129601","https://openalex.org/W2125269856","https://openalex.org/W2127779696","https://openalex.org/W2151409320","https://openalex.org/W2163619998","https://openalex.org/W2171731170","https://openalex.org/W2179984775","https://openalex.org/W2335715110","https://openalex.org/W3086315876"],"related_works":["https://openalex.org/W3145179902","https://openalex.org/W2101880235","https://openalex.org/W2027737873","https://openalex.org/W2174831257","https://openalex.org/W1987838894","https://openalex.org/W7100864368","https://openalex.org/W2102871571","https://openalex.org/W2013410948","https://openalex.org/W2132543781","https://openalex.org/W2086293112"],"abstract_inverted_index":{"Common":[0],"ancestry":[1],"prevents":[2],"scientists":[3],"from":[4],"using":[5,81],"traditional":[6],"statistical":[7,27,87],"tests":[8],"in":[9,17,56,68,76],"dimensional":[10],"comparisons":[11],"that":[12,133,159],"span":[13],"entire":[14],"clades.":[15],"Data":[16],"these":[18],"cases":[19],"are":[20],"non-independent,":[21],"so":[22],"a":[23,77],"variety":[24],"of":[25,52,99,107,119,127],"special":[26],"methods":[28],"have":[29,175],"been":[30,176],"developed":[31],"specifically":[32],"for":[33,171],"phylogenetic":[34,38,79,137,161,172],"comparative":[35],"analyses.":[36,166],"A":[37],"least":[39],"squares":[40],"method":[41],"was":[42,62,93],"used":[43,94],"to":[44,64,95,131,152,155,178],"re-examine":[45],"four":[46],"published":[47,82],"datasets":[48],"detailing":[49],"structural":[50],"correlates":[51],"eyes":[53],"while":[54],"factoring":[55],"the":[57,60,66,86,117,120,124,128,157,180],"different":[58],"ways":[59],"phylogeny":[61,102,118],"expected":[63],"affect":[65],"covariance":[67],"trait":[69],"values.":[70],"All":[71],"analyses":[72],"were":[73],"carried":[74],"out":[75],"strict":[78],"context,":[80],"time-calibrated":[83],"phylogenies":[84],"and":[85,113],"platform":[88],"R.":[89],"Specifically,":[90],"Pagel\u2019s":[91],"lambda":[92],"determine":[96,156],"how":[97],"much":[98],"an":[100],"influence":[101,179],"had":[103],"on":[104,164],"each":[105],"pair":[106],"traits.":[108,183],"In":[109],"all":[110],"tested":[111],"soft":[112],"hard":[114],"tissue":[115],"correlations,":[116],"species":[121],"slightly":[122],"altered":[123],"trend":[125],"lines":[126,132],"measurements,":[129],"compared":[130],"did":[134],"not":[135,144],"take":[136],"relationship":[138,181],"into":[139],"consideration.":[140],"These":[141],"results":[142],"do":[143],"contradict":[145],"previous":[146],"results,":[147],"but":[148],"further":[149],"work":[150],"needs":[151],"be":[153],"done":[154],"implications":[158],"significant":[160],"signal":[162],"has":[163],"subsequent":[165],"Future":[167],"studies":[168],"should":[169],"account":[170],"relationships":[173],"which":[174],"shown":[177],"between":[182]},"counts_by_year":[],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2016-06-24T00:00:00"}