{"id":"https://openalex.org/W4287900807","doi":"https://doi.org/10.13140/rg.2.2.11966.02885","title":"How to name those to blame ? A practical taxonomical study of the Xanthomonas causing bacterial leaf spot of lettuce has major consequences for the boundaries delimitation of X. hortorum","display_name":"How to name those to blame ? A practical taxonomical study of the Xanthomonas causing bacterial leaf spot of lettuce has major consequences for the boundaries delimitation of X. hortorum","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W4287900807","doi":"https://doi.org/10.13140/rg.2.2.11966.02885"},"language":"en","primary_location":{"id":"pmh:oai:HAL:hal-02561970v1","doi":null,"is_oa":false,"landing_page_url":"https://univ-lyon1.hal.science/hal-02561970","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"14\u00e8mes Rencontres Plantes-Bact\u00e9ries, Jan 2020, Aussois, France","raw_type":"info:eu-repo/semantics/conferenceObject"},"volume":null,"type":"conference-paper","is_traditional":true,"indexed_in":["datacite"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004702743","display_name":"Lucas Morini\u00e8re","orcid":"https://orcid.org/0000-0003-1703-8825","observed_orcids":["https://orcid.org/0000-0003-1703-8825"]},"institutions":[{"id":"https://openalex.org/I4210153052","display_name":"Ecologie microbienne","ror":"https://ror.org/053vv7851","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210088668","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210153052"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Morini\u00e8re, Lucas","raw_affiliation_strings":["Laboratoire d'Ecologie Microbienne - UMR 5557"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Ecologie Microbienne - UMR 5557","institution_ids":["https://openalex.org/I4210153052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038321526","display_name":"A. Burlet","orcid":"https://orcid.org/0009-0000-4976-7825","observed_orcids":["https://orcid.org/0009-0000-4976-7825"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Burlet, Alexandre","raw_affiliation_strings":["Station exp\u00e9rimentale Rh\u00f4ne-Alpes et Information L\u00e9gumi\u00e8re"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Station exp\u00e9rimentale Rh\u00f4ne-Alpes et Information L\u00e9gumi\u00e8re","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078395880","display_name":"Emma Rosenthal","orcid":"https://orcid.org/0000-0002-6397-9696","observed_orcids":["https://orcid.org/0000-0002-6397-9696"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rosenthal, Emma R.","raw_affiliation_strings":["Department of Plant pathology and Environmental Microbiology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant pathology and Environmental Microbiology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045841177","display_name":"Xavier Nesme","orcid":"https://orcid.org/0000-0002-9834-7154","observed_orcids":["https://orcid.org/0000-0002-9834-7154"]},"institutions":[{"id":"https://openalex.org/I4210153052","display_name":"Ecologie microbienne","ror":"https://ror.org/053vv7851","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210088668","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210153052"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nesme, Xavier","raw_affiliation_strings":["Laboratoire d'Ecologie Microbienne - UMR 5557"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Ecologie Microbienne - UMR 5557","institution_ids":["https://openalex.org/I4210153052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024764285","display_name":"Perrine Portier","orcid":"https://orcid.org/0000-0003-1033-6731","observed_orcids":["https://orcid.org/0000-0003-1033-6731"]},"institutions":[{"id":"https://openalex.org/I4210125447","display_name":"Institut de Recherche en Horticulture et Semences","ror":"https://ror.org/02xq0x374","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Portier, Perrine","raw_affiliation_strings":["Institut de Recherche en Horticulture et Semences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Recherche en Horticulture et Semences","institution_ids":["https://openalex.org/I4210125447"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057214809","display_name":"Carolee T. Bull","orcid":"https://orcid.org/0000-0002-2592-407X","observed_orcids":["https://orcid.org/0000-0002-2592-407X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bull, Carolee T.","raw_affiliation_strings":["Department of Plant pathology and Environmental Microbiology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant pathology and Environmental Microbiology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047078362","display_name":"C\u00e9line Lavire","orcid":"https://orcid.org/0000-0002-0698-4683","observed_orcids":["https://orcid.org/0000-0002-0698-4683"]},"institutions":[{"id":"https://openalex.org/I4210153052","display_name":"Ecologie microbienne","ror":"https://ror.org/053vv7851","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210088668","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210153052"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lavire, C\u00e9line","raw_affiliation_strings":["Laboratoire d'Ecologie Microbienne - UMR 5557"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Ecologie Microbienne - UMR 5557","institution_ids":["https://openalex.org/I4210153052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056972574","display_name":"Marion Fischer\u2010Le Saux","orcid":"https://orcid.org/0000-0002-9567-9444","observed_orcids":["https://orcid.org/0000-0002-9567-9444"]},"institutions":[{"id":"https://openalex.org/I4210125447","display_name":"Institut de Recherche en Horticulture et Semences","ror":"https://ror.org/02xq0x374","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Saux, Marion Fischer-Le","raw_affiliation_strings":["Institut de Recherche en Horticulture et Semences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Recherche en Horticulture et Semences","institution_ids":["https://openalex.org/I4210125447"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053031096","display_name":"Franck Bertolla","orcid":"https://orcid.org/0000-0001-6515-6370","observed_orcids":["https://orcid.org/0000-0001-6515-6370"]},"institutions":[{"id":"https://openalex.org/I4210153052","display_name":"Ecologie microbienne","ror":"https://ror.org/053vv7851","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210088668","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210153052"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bertolla, Franck","raw_affiliation_strings":["Laboratoire d'Ecologie Microbienne - UMR 5557"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Ecologie Microbienne - UMR 5557","institution_ids":["https://openalex.org/I4210153052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xanthomonas-hortorum-pv-vitians","display_name":"Xanthomonas hortorum pv. vitians","score":0.9200000166893005},{"id":"https://openalex.org/keywords/xanthomonas-campestris-pv-vitians","display_name":"Xanthomonas campestris pv. vitians","score":0.9639999866485596},{"id":"https://openalex.org/keywords/bacterial-taxonomy","display_name":"bacterial taxonomy","score":0.6690000295639038},{"id":"https://openalex.org/keywords/species-delimitation","display_name":"species delimitation","score":0.6869999766349792},{"id":"https://openalex.org/keywords/xanthomonas-cynarae","display_name":"Xanthomonas cynarae","score":0.921999990940094},{"id":"https://openalex.org/keywords/multilocus-sequence-analysis","display_name":"multilocus sequence analysis","score":0.7490000128746033},{"id":"https://openalex.org/keywords/phenotypic-profiling","display_name":"phenotypic profiling","score":0.7490000128746033},{"id":"https://openalex.org/keywords/lettuce","display_name":"lettuce","score":0.3869999945163727}],"concepts":[{"id":"https://openalex.org/C2780034373","wikidata":"https://www.wikidata.org/wiki/Q6508875","display_name":"Leaf spot","level":2,"score":0.7792445421218872},{"id":"https://openalex.org/C2780746887","wikidata":"https://www.wikidata.org/wiki/Q140652","display_name":"Xanthomonas","level":3,"score":0.6415335536003113},{"id":"https://openalex.org/C2781466463","wikidata":"https://www.wikidata.org/wiki/Q621695","display_name":"Blame","level":2,"score":0.5112042427062988},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45775899291038513},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.38683876395225525},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.19364649057388306},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08014187216758728},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:HAL:hal-02561970v1","doi":null,"is_oa":false,"landing_page_url":"https://univ-lyon1.hal.science/hal-02561970","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"14\u00e8mes Rencontres Plantes-Bact\u00e9ries, Jan 2020, Aussois, France","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"doi:10.13140/rg.2.2.11966.02885","doi":"https://doi.org/10.13140/rg.2.2.11966.02885","is_oa":false,"landing_page_url":"https://doi.org/10.13140/rg.2.2.11966.02885","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.6875,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3027167239","https://openalex.org/W4288112357","https://openalex.org/W3215215724","https://openalex.org/W2039408967","https://openalex.org/W2162423127","https://openalex.org/W2116290690","https://openalex.org/W2472018382","https://openalex.org/W1977549575","https://openalex.org/W2057805959","https://openalex.org/W7005170656"],"abstract_inverted_index":{"Assessment":[0],"of":[1,6,14,60,71,85,95,132,196,247,258,292,303,314,330,346,373,379],"the":[2,7,33,82,93,96,152,192,216,243,248,255,297,312,371,377],"taxonomy":[3,238,378],"and":[4,144,182,239,265,316,393,399],"diversity":[5],"Xanthomonas":[8,250],"strains":[9,61],"causing":[10],"bacterial":[11,237,328],"leaf":[12],"spot":[13],"lettuce":[15,148],"(BLSL),":[16],"commonly":[17],"referred":[18],"to":[19,37,43,49,150,229,242,287,321],"as":[20,129],"X.":[21,86,133,154,180,183,259,266,277,293],"campestris":[22,87,134],"pv.":[23,88,135,156],"vitians,":[24],"has":[25],"been":[26],"a":[27,45,54,58,72,223,275,300,308],"long-lasting":[28],"issue":[29],"which":[30],"held":[31],"back":[32],"global":[34,244],"efforts":[35],"made":[36],"understand":[38],"this":[39,112],"pathogen.":[40],"In":[41],"order":[42],"provide":[44],"sound":[46],"basis":[47],"essential":[48],"its":[50],"study,":[51],"we":[52,115,253],"conducted":[53],"polyphasic":[55],"approach":[56],"on":[57,147,299],"panel":[59],"obtained":[62],"through":[63],"sampling":[64],"campaigns":[65],"or":[66],"acquired":[67],"from":[68],"collections.":[69],"Results":[70],"multilocus":[73],"sequence":[74],"analysis":[75],"combined":[76],"with":[77,203,233,240],"phenotypic":[78],"assays":[79,146],"revealed":[80],"that":[81,117],"pathotype":[83,130],"strain":[84,131],"vitians":[89,157],"does":[90,110],"not":[91,209],"match":[92],"description":[94],"nomenspecies":[97],"provided":[98],"by":[99,162,186],"Brown":[100,325],"in":[101,166,231,236],"1918":[102],"[1].":[103],"However,":[104],"LMG":[105,118,124],"938":[106,119],"=":[107,120,126],"CFBP":[108,121,127],"8686":[109,122],"fit":[111],"description.":[113],"Therefore,":[114],"propose":[116,254],"replaces":[123],"937":[125],"2538":[128],"vitians.":[136],"Then,":[137],"overall":[138],"genome":[139,374],"relatedness":[140],"indices":[141],"(OGRIs)":[142],"calculations":[143,189],"crossed-pathogenicity":[145],"allowed":[149],"validate":[151],"nomenclature":[153],"hortorum":[155,181,260,278,294],"comb.":[158,279],"nov.":[159,280],"originally":[160],"proposed":[161],"Vauterin":[163,261,337],"et":[164,262,271,365],"al.":[165,263,272,366],"1995":[167,264],"[2].":[168],"Interestingly,":[169],"genome-based":[170],"phylogenies":[171],"exhibited":[172],"an":[173],"evolutionary":[174],"continuum":[175],"between":[176,190],"closely":[177],"related":[178],"species":[179,221,284,395],"cynarae,":[184],"confirmed":[185],"multiple":[187],"OGRIs":[188],"all":[191],"taxonomically":[193],"relevant":[194],"members":[195,291],"these":[197],"two":[198,219],"species.":[199],"Phenotypic":[200],"profiles":[201],"characterized":[202],"Biolog":[204],"GEN":[205],"III":[206],"microplates":[207],"did":[208],"reveal":[210],"any":[211],"stable":[212,225,283],"diagnostic":[213],"traits":[214],"legitimizing":[215],"distinction":[217],"into":[218,274],"different":[220],"but":[222],"strong":[224],"core":[226],"phenotype.":[227],"Thus,":[228],"be":[230],"accordance":[232],"nowadays":[234],"standards":[235,369],"respect":[241],"taxonomical":[245],"framework":[246],"genus":[249],"[3,":[251],"4],":[252],"new":[256,276,282,289],"combination":[257],"cynarae":[267],"(Tr\u00e9baol":[268],"2000)":[269],"Timilsina":[270],"2018":[273],"This":[281],"would":[285],"allow":[286],"integrate":[288],"uncharacterized":[290],"isolated":[295],"over":[296],"years":[298],"wide":[301],"range":[302],"host":[304,322],"plants,":[305],"making":[306],"it":[307],"promising":[309],"model":[310],"for":[311,370,376,397],"study":[313],"genomic":[315],"ecologic":[317],"determinants":[318],"underlying":[319],"adaptation":[320],"plants.":[323],"1.":[324],"NA.":[326],"Some":[327],"diseases":[329],"lettuce.":[331],"J":[332,349,382],"Agric":[333],"Res":[334],"1918;13:367.":[335],"2.":[336],"L,":[338],"Hoste":[339],"B,":[340],"Kersters":[341],"K,":[342],"Swings":[343],"J.":[344],"Reclassification":[345],"Xanthomonas.":[347],"Int":[348,381],"Syst":[350,383,401],"Evol":[351,384],"Microbiol":[352,385,403],"1995;45:472-489.":[353],"3.":[354],"Chun":[355],"J,":[356],"Oren":[357],"A,":[358,360],"Ventosa":[359],"Christensen":[361],"H,":[362],"Arahal":[363],"DR,":[364],"Proposed":[367],"minimal":[368],"use":[372],"data":[375],"prokaryotes.":[380],"2018;68:461-466.":[386],"4.":[387],"Rossell\u00f3-M\u00f3ra":[388],"R,":[389],"Amann":[390],"R.":[391],"Past":[392],"future":[394],"definitions":[396],"Bacteria":[398],"Archaea.":[400],"Appl":[402],"2015;38:209-216.":[404]},"counts_by_year":[],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2022-07-26T00:00:00"}