{"id":"https://openalex.org/W4287218604","doi":"https://doi.org/10.7717/peerj-cs.1022","title":"Understanding progress in software citation: a study of software citation in the CORD-19 corpus","display_name":"Understanding progress in software citation: a study of software citation in the CORD-19 corpus","publication_year":2022,"publication_date":"2022-07-25","ids":{"openalex":"https://openalex.org/W4287218604","doi":"https://doi.org/10.7717/peerj-cs.1022","pmid":"https://pubmed.ncbi.nlm.nih.gov/36091992","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/9454791"},"language":"en","primary_location":{"id":"doi:10.7717/peerj-cs.1022","doi":"https://doi.org/10.7717/peerj-cs.1022","is_oa":true,"landing_page_url":"https://doi.org/10.7717/peerj-cs.1022","pdf_url":null,"source":{"id":"https://openalex.org/S4210178049","display_name":"PeerJ Computer Science","issn_l":"2376-5992","issn":["2376-5992"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320104","host_organization_name":"PeerJ, Inc.","host_organization_lineage":["https://openalex.org/P4310320104"],"host_organization_lineage_names":["PeerJ, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ Computer Science","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.7717/peerj-cs.1022","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059105472","display_name":"Caifan Du","orcid":"https://orcid.org/0000-0003-2538-607X","observed_orcids":["https://orcid.org/0000-0003-2538-607X"]},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Caifan Du","raw_affiliation_strings":["The University of Texas at Austin, Austin, TX, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas at Austin, Austin, TX, United States of America","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091768359","display_name":"Johanna Cohoon","orcid":"https://orcid.org/0000-0002-3352-9766","observed_orcids":["https://orcid.org/0000-0002-3352-9766"]},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Johanna Cohoon","raw_affiliation_strings":["The University of Texas at Austin, Austin, TX, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas at Austin, Austin, TX, United States of America","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009557399","display_name":"Patrice Lopez","orcid":"https://orcid.org/0000-0002-9959-9441","observed_orcids":["https://orcid.org/0000-0002-9959-9441"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patrice Lopez","raw_affiliation_strings":["Science-miner, Naves, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Science-miner, Naves, France","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034085206","display_name":"James Howison","orcid":"https://orcid.org/0000-0002-5702-149X","observed_orcids":["https://orcid.org/0000-0002-5702-149X"]},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Howison","raw_affiliation_strings":["The University of Texas at Austin, Austin, TX, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas at Austin, Austin, TX, United States of America","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5059105472"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":{"value":1395,"currency":"USD","value_usd":1395},"apc_paid":{"value":1395,"currency":"USD","value_usd":1395},"fwci":0.9029,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.75356706,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":97},"biblio":{"volume":"8","issue":null,"first_page":"e1022","last_page":"e1022"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10102","display_name":"scientometrics and bibliometrics research","score":0.5034000277519226,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10102","display_name":"scientometrics and bibliometrics research","score":0.5034000277519226,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.24400000274181366,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.12759999930858612,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software-citation","display_name":"software citation","score":0.9990000128746033},{"id":"https://openalex.org/keywords/software-versioning","display_name":"software versioning","score":0.7480000257492065},{"id":"https://openalex.org/keywords/software-accessibility","display_name":"software accessibility","score":0.5659999847412109},{"id":"https://openalex.org/keywords/covid-19-research","display_name":"COVID-19 research","score":0.8619999885559082}],"concepts":[{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.7567716836929321},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6270290017127991},{"id":"https://openalex.org/C74579156","wikidata":"https://www.wikidata.org/wiki/Q7554342","display_name":"Software peer review","level":5,"score":0.591738224029541},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.553429365158081},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5511667728424072},{"id":"https://openalex.org/C46110900","wikidata":"https://www.wikidata.org/wiki/Q11702993","display_name":"Software walkthrough","level":5,"score":0.41449517011642456},{"id":"https://openalex.org/C182500959","wikidata":"https://www.wikidata.org/wiki/Q7551380","display_name":"Social software engineering","level":5,"score":0.4111676812171936},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4105716347694397},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.38771501183509827},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3420388698577881},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.29667896032333374},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.7717/peerj-cs.1022","doi":"https://doi.org/10.7717/peerj-cs.1022","is_oa":true,"landing_page_url":"https://doi.org/10.7717/peerj-cs.1022","pdf_url":null,"source":{"id":"https://openalex.org/S4210178049","display_name":"PeerJ Computer Science","issn_l":"2376-5992","issn":["2376-5992"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320104","host_organization_name":"PeerJ, Inc.","host_organization_lineage":["https://openalex.org/P4310320104"],"host_organization_lineage_names":["PeerJ, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ Computer Science","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9454791","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9454791","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ Comput Sci","raw_type":"Text"},{"id":"pmid:36091992","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36091992","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ. Computer science","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:bcc719ac8cf14cc4b9f332993009966d","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/bcc719ac8cf14cc4b9f332993009966d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PeerJ Computer Science, Vol 8, p e1022 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.7717/peerj-cs.1022","doi":"https://doi.org/10.7717/peerj-cs.1022","is_oa":true,"landing_page_url":"https://doi.org/10.7717/peerj-cs.1022","pdf_url":null,"source":{"id":"https://openalex.org/S4210178049","display_name":"PeerJ Computer Science","issn_l":"2376-5992","issn":["2376-5992"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320104","host_organization_name":"PeerJ, Inc.","host_organization_lineage":["https://openalex.org/P4310320104"],"host_organization_lineage_names":["PeerJ, Inc."],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PeerJ Computer Science","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G930026390","display_name":null,"funder_award_id":"2016-7209","funder_id":"https://openalex.org/F4320306151","funder_display_name":"Alfred P. Sloan Foundation"}],"funders":[{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1603719052","https://openalex.org/W1622429627","https://openalex.org/W1696266722","https://openalex.org/W1906460629","https://openalex.org/W1969949383","https://openalex.org/W2096913021","https://openalex.org/W2145374174","https://openalex.org/W2470289662","https://openalex.org/W2490505125","https://openalex.org/W2582743722","https://openalex.org/W2759020546","https://openalex.org/W2783673759","https://openalex.org/W2797873488","https://openalex.org/W2889254835","https://openalex.org/W2945486631","https://openalex.org/W2946645688","https://openalex.org/W2952615074","https://openalex.org/W2970771982","https://openalex.org/W2975287907","https://openalex.org/W2982798514","https://openalex.org/W2992581565","https://openalex.org/W2998064313","https://openalex.org/W3020786614","https://openalex.org/W3021293074","https://openalex.org/W3037766187","https://openalex.org/W3109685454","https://openalex.org/W3116239813","https://openalex.org/W3120914506","https://openalex.org/W3126622959","https://openalex.org/W3154873662","https://openalex.org/W3208256308","https://openalex.org/W3210896084","https://openalex.org/W3214933262","https://openalex.org/W4206158026","https://openalex.org/W4235943384","https://openalex.org/W4306173528","https://openalex.org/W4383031558","https://openalex.org/W4393742486","https://openalex.org/W4393830896","https://openalex.org/W6763022151","https://openalex.org/W6776225533","https://openalex.org/W6911022910","https://openalex.org/W6924958209","https://openalex.org/W6929612768","https://openalex.org/W6962218834"],"related_works":["https://openalex.org/W6950829496","https://openalex.org/W7216464024","https://openalex.org/W4321162679","https://openalex.org/W1622429627","https://openalex.org/W4396667226","https://openalex.org/W4394749966","https://openalex.org/W2470289662","https://openalex.org/W6930721750","https://openalex.org/W2217545624","https://openalex.org/W7214289031"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,122,165],"investigate":[4],"progress":[5,203],"toward":[6],"improved":[7,118],"software":[8,13,27,58,69,78,90,95,111,119,138,141,151,169,187,205],"citation":[9,14,82,142,152,170,188,206],"by":[10,160],"examining":[11],"current":[12],"practices.":[15],"We":[16,49,71,84,106],"first":[17],"introduce":[18],"our":[19],"machine":[20],"learning":[21],"based":[22],"data":[23],"pipeline":[24],"that":[25,133],"extracts":[26],"mentions":[28,59,109,132],"from":[29,60,194],"the":[30,66,76,179,184,202,210],"CORD-19":[31,62],"corpus,":[32],"a":[33,53,125,198],"regularly":[34],"updated":[35],"collection":[36],"of":[37,56,68,88,110,127,130,186,204,212],"more":[38],"than":[39],"280,000":[40],"scholarly":[41],"articles":[42],"on":[43],"COVID-19":[44],"and":[45,80,93,102,117,172,190,208],"related":[46],"historical":[47],"coronaviruses.":[48],"then":[50],"closely":[51],"examine":[52],"stratified":[54],"sample":[55],"extracted":[57],"recent":[61,103],"publications":[63,92],"to":[64,177],"understand":[65],"status":[67],"citation.":[70],"also":[72,123],"searched":[73],"online":[74],"for":[75,168,200],"mentioned":[77],"projects":[79],"their":[81],"requests.":[83],"evaluate":[85],"both":[86],"practices":[87,189],"referencing":[89],"in":[91,97],"making":[94,174],"citable":[96],"comparison":[98],"with":[99,150],"earlier":[100],"findings":[101],"advocacy":[104,153,171,195],"recommendations.":[105],"found":[107,124],"increased":[108,113],"versions,":[112],"open":[114],"source":[115],"practices,":[116],"accessibility.":[120],"Yet,":[121],"continuation":[126],"high":[128],"numbers":[129],"informal":[131],"did":[134,147],"not":[135,148],"sufficiently":[136],"credit":[137],"authors.":[139],"Existing":[140],"requests":[143],"were":[144,156],"diverse":[145],"but":[146],"match":[149],"recommendations":[154],"nor":[155],"they":[157,192],"frequently":[158],"followed":[159],"researchers":[161],"authoring":[162],"papers.":[163],"Finally,":[164],"discuss":[166],"implications":[167],"standard":[173],"efforts":[175],"seeking":[176],"improve":[178],"situation.":[180],"Our":[181],"results":[182],"show":[183],"diversity":[185],"how":[191],"differ":[193],"recommendations,":[196],"provide":[197],"baseline":[199],"assessing":[201],"implementation,":[207],"enrich":[209],"understanding":[211],"existing":[213],"challenges.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2}],"updated_date":"2026-11-01T11:40:01.658920","created_date":"2022-07-25T00:00:00"}