{"id":"https://openalex.org/W4285085014","doi":"https://doi.org/10.1038/s41598-022-16048-y","title":"Rapid, in-field deployable, avian influenza virus haemagglutinin characterisation tool using MinION technology","display_name":"Rapid, in-field deployable, avian influenza virus haemagglutinin characterisation tool using MinION technology","publication_year":2022,"publication_date":"2022-07-13","ids":{"openalex":"https://openalex.org/W4285085014","doi":"https://doi.org/10.1038/s41598-022-16048-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/35831457","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/9279447"},"language":"en","primary_location":{"id":"doi:10.1038/s41598-022-16048-y","doi":"https://doi.org/10.1038/s41598-022-16048-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41598-022-16048-y","pdf_url":"https://www.nature.com/articles/s41598-022-16048-y.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41598-022-16048-y.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053283506","display_name":"Ellen M. de Vries","orcid":"https://orcid.org/0000-0002-4058-0471","observed_orcids":["https://orcid.org/0000-0002-4058-0471"]},"institutions":[{"id":"https://openalex.org/I196829312","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27","country_code":"AU","type":"education","lineage":["https://openalex.org/I196829312"]},{"id":"https://openalex.org/I4210113619","display_name":"Agriculture Victoria","ror":"https://ror.org/01mqx8q10","country_code":"AU","type":"government","lineage":["https://openalex.org/I4210113619"]},{"id":"https://openalex.org/I4210149301","display_name":"AgriBio","ror":"https://ror.org/042kgb568","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210149301"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Ellen M. de Vries","raw_affiliation_strings":["Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia. ellen.devries@agriculture.vic.gov.au","School of Applied Systems Biology, La Trobe University, Bundoora, VIC, 3083, Australia. ellen.devries@agriculture.vic.gov.au","Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia. ellen.devries@agriculture.vic.gov.au","institution_ids":["https://openalex.org/I4210113619","https://openalex.org/I4210149301"]},{"raw_affiliation_string":"School of Applied Systems Biology, La Trobe University, Bundoora, VIC, 3083, Australia. ellen.devries@agriculture.vic.gov.au","institution_ids":["https://openalex.org/I196829312"]},{"raw_affiliation_string":"Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I4210113619","https://openalex.org/I4210149301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005739285","display_name":"Noel O. I. Cogan","orcid":"https://orcid.org/0000-0003-1074-8998","observed_orcids":["https://orcid.org/0000-0003-1074-8998"]},"institutions":[{"id":"https://openalex.org/I196829312","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27","country_code":"AU","type":"education","lineage":["https://openalex.org/I196829312"]},{"id":"https://openalex.org/I4210113619","display_name":"Agriculture Victoria","ror":"https://ror.org/01mqx8q10","country_code":"AU","type":"government","lineage":["https://openalex.org/I4210113619"]},{"id":"https://openalex.org/I4210149301","display_name":"AgriBio","ror":"https://ror.org/042kgb568","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210149301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Noel O. I Cogan","raw_affiliation_strings":["Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","School of Applied Systems Biology, La Trobe University, Bundoora, VIC, 3083, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I4210113619","https://openalex.org/I4210149301"]},{"raw_affiliation_string":"School of Applied Systems Biology, La Trobe University, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I196829312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068251523","display_name":"Aneta J. Gubala","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1303474014","display_name":"Defence Science and Technology Group","ror":"https://ror.org/05ddrvt52","country_code":"AU","type":"government","lineage":["https://openalex.org/I1303474014","https://openalex.org/I2801453606","https://openalex.org/I3139952251"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Aneta J. Gubala","raw_affiliation_strings":["Land Division, Defence Science & Technology Group, Fishermans Bend, VIC, 3207, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Land Division, Defence Science & Technology Group, Fishermans Bend, VIC, 3207, Australia","institution_ids":["https://openalex.org/I1303474014"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030245624","display_name":"Peter T. Mee","orcid":"https://orcid.org/0000-0002-3726-366X","observed_orcids":["https://orcid.org/0000-0002-3726-366X"]},"institutions":[{"id":"https://openalex.org/I4210113619","display_name":"Agriculture Victoria","ror":"https://ror.org/01mqx8q10","country_code":"AU","type":"government","lineage":["https://openalex.org/I4210113619"]},{"id":"https://openalex.org/I4210149301","display_name":"AgriBio","ror":"https://ror.org/042kgb568","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210149301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Peter T. Mee","raw_affiliation_strings":["Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I4210113619","https://openalex.org/I4210149301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031993396","display_name":"Kim J. O\u2019Riley","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210113619","display_name":"Agriculture Victoria","ror":"https://ror.org/01mqx8q10","country_code":"AU","type":"government","lineage":["https://openalex.org/I4210113619"]},{"id":"https://openalex.org/I4210149301","display_name":"AgriBio","ror":"https://ror.org/042kgb568","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210149301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kim J. O\u2019Riley","raw_affiliation_strings":["Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I4210113619","https://openalex.org/I4210149301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014666105","display_name":"Brendan Rodoni","orcid":"https://orcid.org/0000-0001-6092-4246","observed_orcids":["https://orcid.org/0000-0001-6092-4246","https://orcid.org/0009-0007-8506-700X"]},"institutions":[{"id":"https://openalex.org/I196829312","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27","country_code":"AU","type":"education","lineage":["https://openalex.org/I196829312"]},{"id":"https://openalex.org/I4210113619","display_name":"Agriculture Victoria","ror":"https://ror.org/01mqx8q10","country_code":"AU","type":"government","lineage":["https://openalex.org/I4210113619"]},{"id":"https://openalex.org/I4210149301","display_name":"AgriBio","ror":"https://ror.org/042kgb568","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210149301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Brendan C. Rodoni","raw_affiliation_strings":["Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","School of Applied Systems Biology, La Trobe University, Bundoora, VIC, 3083, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I4210113619","https://openalex.org/I4210149301"]},{"raw_affiliation_string":"School of Applied Systems Biology, La Trobe University, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I196829312"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054404211","display_name":"Stacey E. Lynch","orcid":"https://orcid.org/0000-0003-1843-4600","observed_orcids":["https://orcid.org/0000-0003-1843-4600"]},"institutions":[{"id":"https://openalex.org/I4210113619","display_name":"Agriculture Victoria","ror":"https://ror.org/01mqx8q10","country_code":"AU","type":"government","lineage":["https://openalex.org/I4210113619"]},{"id":"https://openalex.org/I4210149301","display_name":"AgriBio","ror":"https://ror.org/042kgb568","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210149301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Stacey E. Lynch","raw_affiliation_strings":["Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia","institution_ids":["https://openalex.org/I4210113619","https://openalex.org/I4210149301"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5053283506"],"corresponding_institution_ids":["https://openalex.org/I196829312","https://openalex.org/I4210113619","https://openalex.org/I4210149301"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":3.1201,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.92567828,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"11886","last_page":"11886"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11393","display_name":"Biosensors and Analytical Detection","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/avian-influenza-virus","display_name":"avian influenza virus","score":1.0},{"id":"https://openalex.org/keywords/hemagglutinin","display_name":"hemagglutinin","score":0.9179999828338623},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"nanopore sequencing","score":0.7599999904632568},{"id":"https://openalex.org/keywords/oxford-nanopore-minion","display_name":"Oxford Nanopore MinION","score":0.9750000238418579},{"id":"https://openalex.org/keywords/poultry","display_name":"poultry","score":0.675000011920929},{"id":"https://openalex.org/keywords/virus-screening","display_name":"viral screening","score":0.3319999873638153},{"id":"https://openalex.org/keywords/bioinformatics-pipeline","display_name":"bioinformatics pipeline","score":0.8799999952316284},{"id":"https://openalex.org/keywords/point-of-care-testing","display_name":"point-of-care testing","score":0.6349999904632568}],"concepts":[{"id":"https://openalex.org/C2779927696","wikidata":"https://www.wikidata.org/wiki/Q6865654","display_name":"Minion","level":5,"score":0.9306402206420898},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.6044821739196777},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.6019187569618225},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5819505453109741},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5461131930351257},{"id":"https://openalex.org/C519248777","wikidata":"https://www.wikidata.org/wiki/Q160122","display_name":"Influenza A virus subtype H5N1","level":3,"score":0.5387507677078247},{"id":"https://openalex.org/C2776834261","wikidata":"https://www.wikidata.org/wiki/Q21651","display_name":"Waterfowl","level":3,"score":0.5263513326644897},{"id":"https://openalex.org/C2993559633","wikidata":"https://www.wikidata.org/wiki/Q43987","display_name":"Avian influenza virus","level":4,"score":0.4536419212818146},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4473763704299927},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38402748107910156},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.23342862725257874},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15289148688316345},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.09274247288703918},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06628045439720154},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001315","descriptor_name":"Australia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005585","descriptor_name":"Influenza in Birds","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006388","descriptor_name":"Hemagglutinins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011200","descriptor_name":"Poultry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013672","descriptor_name":"Technology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053001","descriptor_name":"Tool Use Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1038/s41598-022-16048-y","doi":"https://doi.org/10.1038/s41598-022-16048-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41598-022-16048-y","pdf_url":"https://www.nature.com/articles/s41598-022-16048-y.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9279447","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9279447","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sci Rep","raw_type":"Text"},{"id":"pmid:35831457","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35831457","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific reports","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:98aed374d1804479853f1305d89f4c6d","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/98aed374d1804479853f1305d89f4c6d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scientific Reports, Vol 12, Iss 1, Pp 1-15 (2022)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/21366789","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Rapid_in-field_deployable_avian_influenza_virus_haemagglutinin_characterisation_tool_using_MinION_technology/21366789","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.26181/21366789","doi":"https://doi.org/10.26181/21366789","is_oa":true,"landing_page_url":"https://doi.org/10.26181/21366789","pdf_url":null,"source":{"id":"https://openalex.org/S7407052018","display_name":"La Trobe University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I196829312","host_organization_name":"La Trobe University","host_organization_lineage":["https://openalex.org/I196829312"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.26181/21366789.v1","doi":"https://doi.org/10.26181/21366789.v1","is_oa":true,"landing_page_url":"https://doi.org/10.26181/21366789.v1","pdf_url":null,"source":{"id":"https://openalex.org/S7407052018","display_name":"La Trobe University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I196829312","host_organization_name":"La Trobe University","host_organization_lineage":["https://openalex.org/I196829312"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.26181/21366789.v2","doi":"https://doi.org/10.26181/21366789.v2","is_oa":true,"landing_page_url":"https://doi.org/10.26181/21366789.v2","pdf_url":null,"source":{"id":"https://openalex.org/S7407052018","display_name":"La Trobe University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I196829312","host_organization_name":"La Trobe University","host_organization_lineage":["https://openalex.org/I196829312"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1038/s41598-022-16048-y","doi":"https://doi.org/10.1038/s41598-022-16048-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41598-022-16048-y","pdf_url":"https://www.nature.com/articles/s41598-022-16048-y.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2259867510","display_name":null,"funder_award_id":"G12017SRodoniLaT459","funder_id":"https://openalex.org/F4320325584","funder_display_name":"Defence Science Institute"}],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320577","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27"},{"id":"https://openalex.org/F4320322416","display_name":"Melbourne Water","ror":"https://ror.org/01r7sqp31"},{"id":"https://openalex.org/F4320325584","display_name":"Defence Science Institute","ror":"https://ror.org/01g2myd70"},{"id":"https://openalex.org/F4320330024","display_name":"Agriculture Victoria","ror":"https://ror.org/01mqx8q10"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4285085014.pdf","grobid_xml":"https://content.openalex.org/works/W4285085014.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1505191356","https://openalex.org/W1527251721","https://openalex.org/W1536786457","https://openalex.org/W1570034014","https://openalex.org/W1967721794","https://openalex.org/W1990545448","https://openalex.org/W2014009906","https://openalex.org/W2040358152","https://openalex.org/W2052319450","https://openalex.org/W2069831575","https://openalex.org/W2073675042","https://openalex.org/W2105275554","https://openalex.org/W2110322110","https://openalex.org/W2113827628","https://openalex.org/W2115055359","https://openalex.org/W2119867242","https://openalex.org/W2132228958","https://openalex.org/W2133799499","https://openalex.org/W2152226780","https://openalex.org/W2158073495","https://openalex.org/W2159734253","https://openalex.org/W2166265186","https://openalex.org/W2259815689","https://openalex.org/W2509439934","https://openalex.org/W2616925143","https://openalex.org/W2618268848","https://openalex.org/W2622037040","https://openalex.org/W2767318416","https://openalex.org/W2781015736","https://openalex.org/W2788228074","https://openalex.org/W2797909272","https://openalex.org/W2806906657","https://openalex.org/W2807668996","https://openalex.org/W2808735032","https://openalex.org/W2890852354","https://openalex.org/W2922431698","https://openalex.org/W2944708711","https://openalex.org/W2950354111","https://openalex.org/W2952032837","https://openalex.org/W2969667027","https://openalex.org/W2987090009","https://openalex.org/W2992976869","https://openalex.org/W3000170873","https://openalex.org/W3005487668","https://openalex.org/W3023984597","https://openalex.org/W3024639157","https://openalex.org/W3027529431","https://openalex.org/W3028100092","https://openalex.org/W3035735080","https://openalex.org/W3037930727","https://openalex.org/W3043177992","https://openalex.org/W3082705853","https://openalex.org/W3088011310","https://openalex.org/W3092609341","https://openalex.org/W3107212993","https://openalex.org/W3127393617","https://openalex.org/W3149079452","https://openalex.org/W4226000574","https://openalex.org/W4229441302"],"related_works":["https://openalex.org/W4417496685","https://openalex.org/W3127393617","https://openalex.org/W4391108832","https://openalex.org/W4407695786","https://openalex.org/W4293206317","https://openalex.org/W4321372563","https://openalex.org/W7164358983","https://openalex.org/W4377220820","https://openalex.org/W4387336140","https://openalex.org/W2029925900"],"abstract_inverted_index":{"Outbreaks":[0],"of":[1,14,29,51,62,98,101,122,156,182],"avian":[2],"influenza":[3],"virus":[4,103,135],"(AIV)":[5],"from":[6,126],"wild":[7,32,127],"waterfowl":[8,33],"into":[9],"the":[10,25,41,99,102,154,165,180],"poultry":[11],"industry":[12],"is":[13,18,34],"upmost":[15],"significance":[16],"and":[17,21,53,72,92,119,130,137,188],"an":[19],"ongoing":[20],"constant":[22],"threat":[23],"to":[24,55,77,82,106,148,153,171],"industry.":[26],"Accurate":[27],"surveillance":[28,45],"AIV":[30,48,123,163],"in":[31,36,40,96,193],"critical":[35,190],"understanding":[37],"viral":[38],"diversity":[39],"natural":[42],"reservoir.":[43],"Current":[44],"methods":[46],"for":[47,58,116,161],"involve":[49],"collection":[50],"samples":[52,63],"transportation":[54,181],"a":[56,141,194],"laboratory":[57],"molecular":[59],"diagnostics.":[60],"Processing":[61],"using":[64],"this":[65],"approach":[66],"takes":[67],"more":[68],"than":[69],"three":[70],"days":[71],"may":[73],"limit":[74],"testing":[75],"locations":[76],"those":[78],"with":[79],"practical":[80],"access":[81,187],"laboratories.":[83],"In":[84],"potential":[85],"outbreak":[86],"situations,":[87],"response":[88],"times":[89],"are":[90],"critical,":[91],"delays":[93],"have":[94],"implications":[95],"terms":[97],"spread":[100],"that":[104],"leads":[105],"increased":[107],"economic":[108],"cost.":[109],"This":[110],"study":[111],"used":[112],"nanopore":[113],"sequencing":[114,118,138],"technology":[115],"in-field":[117,134],"subtype":[120,150,173],"characterisation":[121],"strains":[124,164],"collected":[125],"bird":[128],"faeces":[129],"poultry.":[131],"A":[132],"custom":[133],"screening":[136],"protocol,":[139],"including":[140],"targeted":[142,170],"offline":[143],"bioinformatic":[144,166],"pipeline,":[145],"was":[146,168],"developed":[147],"accurately":[149],"AIV.":[151],"Due":[152],"lack":[155],"optimal":[157],"diagnostic":[158,191],"MinION":[159],"packages":[160],"Australian":[162],"pipeline":[167],"specifically":[169],"confidently":[172],"local":[174],"strains.":[175],"The":[176],"method":[177],"presented":[178],"eliminates":[179],"samples,":[183],"dependence":[184],"on":[185],"internet":[186],"delivers":[189],"information":[192],"timely":[195],"manner.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2022-07-14T00:00:00"}
