{"id":"https://openalex.org/W4283642020","doi":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2","title":"Antibiotic treatment of the breadcrumb sponge Halichondria panicea and subsequent recolonization v2","display_name":"Antibiotic treatment of the breadcrumb sponge Halichondria panicea and subsequent recolonization v2","publication_year":2022,"publication_date":"2022-06-28","ids":{"openalex":"https://openalex.org/W4283642020","doi":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2"},"language":"en","primary_location":{"id":"doi:10.17504/protocols.io.3byl4kpk2vo5/v2","doi":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2","is_oa":true,"landing_page_url":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2","pdf_url":"https://www.protocols.io/view/antibiotic-treatment-of-the-breadcrumb-sponge-hali-cb8wsrxe.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"volume":null,"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.protocols.io/view/antibiotic-treatment-of-the-breadcrumb-sponge-hali-cb8wsrxe.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076821784","display_name":"Lara Schmittmann","orcid":"https://orcid.org/0000-0003-3763-3293","observed_orcids":["https://orcid.org/0000-0003-3763-3293"]},"institutions":[{"id":"https://openalex.org/I34403800","display_name":"GEOMAR Helmholtz Centre for Ocean Research Kiel","ror":"https://ror.org/02h2x0161","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I34403800"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lara Schmittmann","raw_affiliation_strings":["GEOMAR Helmholtz Centre for Ocean Research","GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems Tech","GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GEOMAR Helmholtz Centre for Ocean Research","institution_ids":["https://openalex.org/I34403800"]},{"raw_affiliation_string":"GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems Tech","institution_ids":["https://openalex.org/I34403800"]},{"raw_affiliation_string":"GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems","institution_ids":["https://openalex.org/I34403800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024806867","display_name":"Ute Hentschel","orcid":"https://orcid.org/0000-0003-0596-790X","observed_orcids":["https://orcid.org/0000-0003-0596-790X"]},"institutions":[{"id":"https://openalex.org/I34403800","display_name":"GEOMAR Helmholtz Centre for Ocean Research Kiel","ror":"https://ror.org/02h2x0161","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I34403800"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ute U Hentschel","raw_affiliation_strings":["GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems Tech","GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems Tech","institution_ids":["https://openalex.org/I34403800"]},{"raw_affiliation_string":"GEOMAR Helmholtz Centre for Ocean Research Kiel Symbiosis Model Systems","institution_ids":["https://openalex.org/I34403800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I34403800"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11340","display_name":"Marine Sponges and Natural Products","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11340","display_name":"Marine Sponges and Natural Products","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10341","display_name":"Coral and Marine Ecosystems Studies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/halichondria-panicea","display_name":"Halichondria panicea","score":0.9980000257492065},{"id":"https://openalex.org/keywords/sponge-microbiome","display_name":"sponge microbiome","score":0.8610000014305115},{"id":"https://openalex.org/keywords/antibiotic-therapy","display_name":"antibiotic therapy","score":0.8209999799728394},{"id":"https://openalex.org/keywords/bacterial-recolonization","display_name":"bacterial recolonization","score":0.9710000157356262},{"id":"https://openalex.org/keywords/bacterial-bacterial-interactions","display_name":"bacterial-bacterial interactions","score":0.8510000109672546}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7398273944854736},{"id":"https://openalex.org/C2778849931","wikidata":"https://www.wikidata.org/wiki/Q18960","display_name":"Sponge","level":2,"score":0.6349689364433289},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6185891628265381},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.5738323330879211},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.5510981678962708},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5168283581733704},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.5133506655693054},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.4181459844112396},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.41534852981567383},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.3406156301498413},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.11038196086883545},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07982000708580017},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.17504/protocols.io.3byl4kpk2vo5/v2","doi":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2","is_oa":true,"landing_page_url":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2","pdf_url":"https://www.protocols.io/view/antibiotic-treatment-of-the-breadcrumb-sponge-hali-cb8wsrxe.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},{"id":"pmh:oai:oceanrep.geomar.de:57960","doi":null,"is_oa":false,"landing_page_url":"https://oceanrep.geomar.de/id/eprint/57960/3/antibiotic-treatment-of-the-breadcrumb-sponge-hali-cb8wsrxe-1.pdf","pdf_url":"https://oceanrep.geomar.de/id/eprint/57960/3/antibiotic-treatment-of-the-breadcrumb-sponge-hali-cb8wsrxe-1.pdf","source":{"id":"https://openalex.org/S4306400264","display_name":"Helmholtz Centre for Ocean Research Kiel (GEOMAR)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I34403800","host_organization_name":"GEOMAR Helmholtz Centre for Ocean Research Kiel","host_organization_lineage":["https://openalex.org/I34403800"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Report"}],"best_oa_location":{"id":"doi:10.17504/protocols.io.3byl4kpk2vo5/v2","doi":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2","is_oa":true,"landing_page_url":"https://doi.org/10.17504/protocols.io.3byl4kpk2vo5/v2","pdf_url":"https://www.protocols.io/view/antibiotic-treatment-of-the-breadcrumb-sponge-hali-cb8wsrxe.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283642020.pdf","grobid_xml":"https://content.openalex.org/works/W4283642020.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4200020352","https://openalex.org/W7000348459","https://openalex.org/W4306410132","https://openalex.org/W2959590758","https://openalex.org/W1978359037","https://openalex.org/W6903454071","https://openalex.org/W7126753121","https://openalex.org/W3086442525","https://openalex.org/W4403790885","https://openalex.org/W7062341082"],"abstract_inverted_index":{"This":[0],"protocol":[1],"generates":[2],"sponges":[3],"(Halichondria":[4],"panicea)":[5],"with":[6,26,59],"a":[7,35],"disturbed":[8],"microbiome":[9,62],"under":[10],"controlled":[11],"experimental":[12],"conditions,":[13],"in":[14,41],"order":[15],"to":[16],"study":[17],"bacterial":[18],"recolonization":[19,58],"dynamics.":[20],"Bacteria-bacteria":[21],"interactions":[22],"can":[23],"be":[24],"analysed":[25],"this":[27],"set-up":[28],"within":[29],"the":[30,47,60],"host":[31],"environment":[32],"aiming":[33],"at":[34],"better":[36],"understanding":[37],"of":[38],"sponge-microbe":[39],"symbiosis":[40],"vivo.":[42],"It":[43],"is":[44],"divided":[45],"into":[46],"sections":[48],"1)":[49],"preparation,":[50],"2)":[51],"antibiotic":[52],"treatment":[53],"and":[54,63],"recovery":[55],"phase,":[56],"3)":[57],"natural":[61],"4)":[64],"sampling.":[65]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2022-06-29T00:00:00"}