{"id":"https://openalex.org/W4283519233","doi":"https://doi.org/10.1186/s40793-022-00426-0","title":"specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data","display_name":"specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data","publication_year":2022,"publication_date":"2022-06-25","ids":{"openalex":"https://openalex.org/W4283519233","doi":"https://doi.org/10.1186/s40793-022-00426-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/35752802","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/9233361"},"language":"en","primary_location":{"id":"doi:10.1186/s40793-022-00426-0","doi":"https://doi.org/10.1186/s40793-022-00426-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40793-022-00426-0","pdf_url":"https://environmentalmicrobiome.biomedcentral.com/counter/pdf/10.1186/s40793-022-00426-0","source":{"id":"https://openalex.org/S4210205086","display_name":"Environmental Microbiome","issn_l":"2524-6372","issn":["2524-6372"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","norway-1","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Microbiome","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://environmentalmicrobiome.biomedcentral.com/counter/pdf/10.1186/s40793-022-00426-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076986462","display_name":"John L. Darcy","orcid":"https://orcid.org/0000-0003-4900-1891","observed_orcids":["https://orcid.org/0000-0003-4900-1891"]},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John L. Darcy","raw_affiliation_strings":["Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine","Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA"],"raw_orcid":"https://orcid.org/0000-0003-4900-1891","affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003973826","display_name":"Anthony S. Amend","orcid":"https://orcid.org/0000-0002-0983-2984","observed_orcids":["https://orcid.org/0000-0002-0983-2984"]},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony S. Amend","raw_affiliation_strings":["Pacific Biosciences Research Center, University of Hawai\u2018i at M\u0101noa","School of Life Sciences, University of Hawai\u2018i at M\u0101noa","School of Life Sciences, University of Hawai'i at M\u0101noa, Honolulu, HI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pacific Biosciences Research Center, University of Hawai\u2018i at M\u0101noa","institution_ids":["https://openalex.org/I117965899"]},{"raw_affiliation_string":"School of Life Sciences, University of Hawai\u2018i at M\u0101noa","institution_ids":["https://openalex.org/I117965899"]},{"raw_affiliation_string":"School of Life Sciences, University of Hawai'i at M\u0101noa, Honolulu, HI, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043522708","display_name":"Sean O. I. Swift","orcid":"https://orcid.org/0000-0002-1170-4711","observed_orcids":["https://orcid.org/0000-0002-1170-4711"]},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean O. I. Swift","raw_affiliation_strings":["School of Life Sciences, University of Hawai\u2018i at M\u0101noa","School of Life Sciences, University of Hawai'i at M\u0101noa, Honolulu, HI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, University of Hawai\u2018i at M\u0101noa","institution_ids":["https://openalex.org/I117965899"]},{"raw_affiliation_string":"School of Life Sciences, University of Hawai'i at M\u0101noa, Honolulu, HI, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110816580","display_name":"Pacifica S. Sommers","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pacifica S. Sommers","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Colorado","Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Boulder, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Colorado","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Boulder, CO, USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086938254","display_name":"Catherine Lozupone","orcid":"https://orcid.org/0000-0003-4786-7202","observed_orcids":["https://orcid.org/0000-0003-4786-7202"]},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Catherine A. Lozupone","raw_affiliation_strings":["Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine","Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Division of Biomedical Informatics and Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134","https://openalex.org/I921990950"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5076986462"],"corresponding_institution_ids":["https://openalex.org/I51713134","https://openalex.org/I921990950"],"apc_list":{"value":2090,"currency":"USD","value_usd":2090},"apc_paid":{"value":2090,"currency":"USD","value_usd":2090},"fwci":1.9958,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.8543301,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"34","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.8726000189781189,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.8726000189781189,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10005","display_name":"Ecology and Vegetation Dynamics Studies","score":0.0714000016450882,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.028699999675154686,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/environmental-variables","display_name":"environmental variables","score":0.5730000138282776},{"id":"https://openalex.org/keywords/rao-s-quadratic-entropy","display_name":"Rao's quadratic entropy","score":0.8080000281333923},{"id":"https://openalex.org/keywords/microbiome-analysis","display_name":"microbiome analysis","score":0.6520000100135803},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6930000185966492},{"id":"https://openalex.org/keywords/algal-community-composition","display_name":"algal community composition","score":0.8090000152587891},{"id":"https://openalex.org/keywords/human-gut-microbiota","display_name":"human gut microbiome","score":0.8690000176429749},{"id":"https://openalex.org/keywords/bile-acids","display_name":"bile acids","score":0.9869999885559082},{"id":"https://openalex.org/keywords/earth-microbiome-project","display_name":"Earth Microbiome Project","score":0.9750000238418579},{"id":"https://openalex.org/keywords/host-phylogeny","display_name":"host phylogeny","score":0.6389999985694885},{"id":"https://openalex.org/keywords/geographic-distance","display_name":"geographic distance","score":0.8790000081062317}],"concepts":[{"id":"https://openalex.org/C25147867","wikidata":"https://www.wikidata.org/wiki/Q36039","display_name":"Beta diversity","level":3,"score":0.7288404703140259},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6694614887237549},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6680750250816345},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5630635619163513},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.5595412850379944},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.5577145218849182},{"id":"https://openalex.org/C53565203","wikidata":"https://www.wikidata.org/wiki/Q17146659","display_name":"Species richness","level":2,"score":0.3081032633781433},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.263477623462677},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12245973944664001},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s40793-022-00426-0","doi":"https://doi.org/10.1186/s40793-022-00426-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40793-022-00426-0","pdf_url":"https://environmentalmicrobiome.biomedcentral.com/counter/pdf/10.1186/s40793-022-00426-0","source":{"id":"https://openalex.org/S4210205086","display_name":"Environmental Microbiome","issn_l":"2524-6372","issn":["2524-6372"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","norway-1","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Microbiome","raw_type":"journal-article"},{"id":"doi:10.1101/2021.11.06.467582","doi":"https://doi.org/10.1101/2021.11.06.467582","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2021.11.06.467582","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2022/06/12/2021.11.06.467582.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:9233361","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9233361","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environ Microbiome","raw_type":"Text"},{"id":"pmid:35752802","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35752802","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental microbiome","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:ce8a3be41d5b4f679637da27ebbe5ce7","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/ce8a3be41d5b4f679637da27ebbe5ce7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Environmental Microbiome, Vol 17, Iss 1, Pp 1-12 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40793-022-00426-0","doi":"https://doi.org/10.1186/s40793-022-00426-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40793-022-00426-0","pdf_url":"https://environmentalmicrobiome.biomedcentral.com/counter/pdf/10.1186/s40793-022-00426-0","source":{"id":"https://openalex.org/S4210205086","display_name":"Environmental Microbiome","issn_l":"2524-6372","issn":["2524-6372"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","norway-1","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Microbiome","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G4741435936","display_name":"MaSI3: A Massively Scalable Intelligent Information Infrastructure","funder_award_id":"EP/K00607X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5059073571","display_name":"Optimization for robust design: Integrating model-based systems engineering with multi-criteria decision-making support in a distributed framework","funder_award_id":"EP/L025760/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G7643790654","display_name":"Collaborative Research:   Diversity and evolution of fungal endophytes in native Hawaiian plants","funder_award_id":"1255972","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G9000906582","display_name":"Colorado Biomedical Informatics Training Program","funder_award_id":"T15LM009451","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283519233.pdf","grobid_xml":"https://content.openalex.org/works/W4283519233.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W616965233","https://openalex.org/W1703384511","https://openalex.org/W1946772113","https://openalex.org/W1986782327","https://openalex.org/W1986908574","https://openalex.org/W2003771830","https://openalex.org/W2003823035","https://openalex.org/W2014538668","https://openalex.org/W2049506766","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2066005206","https://openalex.org/W2079183971","https://openalex.org/W2083717261","https://openalex.org/W2092134757","https://openalex.org/W2092613485","https://openalex.org/W2105333758","https://openalex.org/W2108201840","https://openalex.org/W2108377871","https://openalex.org/W2110065044","https://openalex.org/W2117104744","https://openalex.org/W2118751052","https://openalex.org/W2126034631","https://openalex.org/W2129802470","https://openalex.org/W2137735377","https://openalex.org/W2143814081","https://openalex.org/W2147461159","https://openalex.org/W2159325249","https://openalex.org/W2162036626","https://openalex.org/W2165648465","https://openalex.org/W2166655850","https://openalex.org/W2342727817","https://openalex.org/W2401404581","https://openalex.org/W2470308021","https://openalex.org/W2613910731","https://openalex.org/W2736575279","https://openalex.org/W2766358903","https://openalex.org/W2767683865","https://openalex.org/W2771593797","https://openalex.org/W2789822287","https://openalex.org/W2790046972","https://openalex.org/W2809043183","https://openalex.org/W2889477263","https://openalex.org/W2892206041","https://openalex.org/W2903406988","https://openalex.org/W2912430686","https://openalex.org/W2914634768","https://openalex.org/W2923044658","https://openalex.org/W2949939796","https://openalex.org/W2973456865","https://openalex.org/W2976664243","https://openalex.org/W2993955438","https://openalex.org/W3041792083","https://openalex.org/W3088992178","https://openalex.org/W3097964496","https://openalex.org/W3100448840","https://openalex.org/W3137433318","https://openalex.org/W3193407317","https://openalex.org/W4205925209","https://openalex.org/W4232308647","https://openalex.org/W4238601639","https://openalex.org/W6634273410","https://openalex.org/W6869699453"],"related_works":["https://openalex.org/W6959924658","https://openalex.org/W3088115600","https://openalex.org/W6903633302","https://openalex.org/W3102348255","https://openalex.org/W3167190446","https://openalex.org/W2159555089","https://openalex.org/W2749034701","https://openalex.org/W3091641925","https://openalex.org/W7095219980","https://openalex.org/W6959943146"],"abstract_inverted_index":{"BACKGROUND:":[0],"Understanding":[1],"the":[2,44,61,126,148,194,203,212],"factors":[3],"that":[4,144,182,219,274],"influence":[5],"microbes'":[6],"environmental":[7,20,73,115],"distributions":[8],"is":[9,40,241],"important":[10],"for":[11,124],"determining":[12],"drivers":[13],"of":[14,46,71,105,150,172,205,211,245],"microbial":[15,37,135,272],"community":[16,190],"composition.":[17,191],"These":[18,283],"include":[19],"variables":[21,28,164],"like":[22,29],"temperature":[23],"and":[24,26,32,129,159,253,258,263,289],"pH,":[25],"higher-dimensional":[27],"geographic":[30],"distance":[31],"host":[33,49],"species":[34,66],"phylogeny.":[35],"In":[36,175],"ecology,":[38],"\"specificity\"":[39],"often":[41],"described":[42],"in":[43,168,193,249,271],"context":[45],"symbiotic":[47],"or":[48],"parasitic":[50],"interactions,":[51],"but":[52],"specificity":[53,104,123,156,186,201,225,240],"can":[54,98,268,285],"be":[55,99,277,287],"more":[56],"broadly":[57],"used":[58],"to":[59,63,102,112,132,138,157,187,202,226,243],"describe":[60,83],"extent":[62],"which":[64],"a":[65,68,80,106,110,169,280],"occupies":[67],"narrower":[69],"range":[70],"an":[72],"variable":[74],"than":[75],"expected":[76,233],"by":[77],"chance.":[78],"Using":[79],"standardization":[81],"we":[82,265],"here,":[84],"Rao's":[85],"(Theor":[86],"Popul":[87],"Biol,":[88],"1982.":[89],"https://doi.org/10.1016/0040-5809(82)90004-1,":[90],"Sankhya":[91],"A,":[92],"2010.":[93],"https://doi.org/10.1007/s13171-010-0016-3":[94],")":[95],"Quadratic":[96],"Entropy":[97],"conveniently":[100],"applied":[101],"calculate":[103],"feature,":[107],"such":[108],"as":[109,232,237],"species,":[111],"many":[113,145,183,198],"different":[114],"variables.":[116],"RESULTS:":[117],"We":[118,142],"present":[119,266],"our":[120,179,209],"R":[121],"package":[122],"performing":[125],"above":[127],"analyses,":[128],"apply":[130],"it":[131],"four":[133],"real-life":[134],"data":[136,216,236],"sets":[137],"demonstrate":[139],"its":[140],"application.":[141],"found":[143],"fungi":[146],"within":[147],"leaves":[149],"native":[151],"Hawaiian":[152],"plants":[153],"had":[154],"strong":[155,223],"rainfall":[158],"elevation,":[160],"even":[161],"though":[162],"these":[163],"showed":[165,200,218],"minimal":[166],"importance":[167],"previous":[170],"analysis":[171,210,244,262],"fungal":[173],"beta-diversity.":[174],"Antarctic":[176],"cryoconite":[177],"holes,":[178],"tool":[180],"revealed":[181],"bacteria":[184,199,221],"have":[185],"co-occurring":[188],"algal":[189],"Similarly,":[192],"human":[195],"gut":[196],"microbiome,":[197],"composition":[204],"bile":[206],"acids.":[207],"Finally,":[208],"Earth":[213],"Microbiome":[214],"Project":[215],"set":[217],"most":[220],"show":[222],"ontological":[224],"sample":[227],"type.":[228],"Our":[229],"software":[230,264],"performed":[231],"on":[234],"synthetic":[235,250],"well.":[238],"CONCLUSIONS:":[239],"well-suited":[242],"microbiome":[246],"data,":[247],"both":[248],"test":[251],"cases,":[252],"across":[254],"multiple":[255],"environment":[256],"types":[257],"experimental":[259],"designs.":[260],"The":[261],"here":[267],"reveal":[269],"patterns":[270],"taxa":[273],"may":[275],"not":[276],"evident":[278],"from":[279],"community-level":[281],"perspective.":[282],"insights":[284],"also":[286],"visualized":[288],"interactively":[290],"shared":[291],"among":[292],"researchers":[293],"using":[294],"specificity's":[295],"companion":[296],"package,":[297],"specificity.shiny.":[298]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2022-06-27T00:00:00"}
