{"id":"https://openalex.org/W4282014842","doi":"https://doi.org/10.3390/ncrna8030041","title":"Association between Triplex-Forming Sites of Cardiac Long Noncoding RNA GATA6-AS1 and Chromatin Organization","display_name":"Association between Triplex-Forming Sites of Cardiac Long Noncoding RNA GATA6-AS1 and Chromatin Organization","publication_year":2022,"publication_date":"2022-06-01","ids":{"openalex":"https://openalex.org/W4282014842","doi":"https://doi.org/10.3390/ncrna8030041","pmid":"https://pubmed.ncbi.nlm.nih.gov/35736638","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/9227037"},"language":"en","primary_location":{"id":"doi:10.3390/ncrna8030041","doi":"https://doi.org/10.3390/ncrna8030041","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ncrna8030041","pdf_url":"https://www.mdpi.com/2311-553X/8/3/41/pdf?version=1654077581","source":{"id":"https://openalex.org/S2737131929","display_name":"Non-Coding RNA","issn_l":"2311-553X","issn":["2311-553X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Non-Coding RNA","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2311-553X/8/3/41/pdf?version=1654077581","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001072414","display_name":"Benjamin Soibam","orcid":"https://orcid.org/0000-0002-1532-9955","observed_orcids":["https://orcid.org/0000-0002-1532-9955"]},"institutions":[{"id":"https://openalex.org/I16277215","display_name":"University of Houston - Downtown","ror":"https://ror.org/05mj6fy81","country_code":"US","type":"education","lineage":["https://openalex.org/I16277215"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin Soibam","raw_affiliation_strings":["Computer Science and Engineering Technology, University of Houston-Downtown, Houston, TX 77002, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Technology, University of Houston-Downtown, Houston, TX 77002, USA","institution_ids":["https://openalex.org/I16277215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001072414"],"corresponding_institution_ids":["https://openalex.org/I16277215"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1675},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1675},"fwci":0.9483,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.68018935,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"3","first_page":"41","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.7271000146865845,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.7271000146865845,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.23549999296665192,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.009100000374019146,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"long non-coding RNA","score":0.9319999814033508},{"id":"https://openalex.org/keywords/rna-dna-triplex","display_name":"RNA-DNA triplex","score":0.8529999852180481},{"id":"https://openalex.org/keywords/3d-genome-organization","display_name":"3D genome organization","score":0.9390000104904175},{"id":"https://openalex.org/keywords/topologically-associated-domains","display_name":"topologically associating domains","score":0.9909999966621399},{"id":"https://openalex.org/keywords/tad-boundaries","display_name":"TAD boundaries","score":0.8870000243186951},{"id":"https://openalex.org/keywords/ctcf","display_name":"CTCF","score":0.8309999704360962},{"id":"https://openalex.org/keywords/chromatin-organization","display_name":"chromatin organization","score":0.8970000147819519},{"id":"https://openalex.org/keywords/cardiac-differentiation","display_name":"cardiac differentiation","score":0.7799999713897705},{"id":"https://openalex.org/keywords/repetitive-elements","display_name":"repetitive elements","score":0.871999979019165},{"id":"https://openalex.org/keywords/hi-c","display_name":"Hi-C","score":0.8399999737739563}],"concepts":[{"id":"https://openalex.org/C125449221","wikidata":"https://www.wikidata.org/wiki/Q18025483","display_name":"GATA6","level":4,"score":0.8044373989105225},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6806686520576477},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6315991878509521},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5599307417869568},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5495705008506775},{"id":"https://openalex.org/C22322919","wikidata":"https://www.wikidata.org/wiki/Q5533501","display_name":"Genomic organization","level":4,"score":0.5136439204216003},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.510347306728363},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.4662591218948364},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4502961337566376},{"id":"https://openalex.org/C2778760011","wikidata":"https://www.wikidata.org/wiki/Q21163346","display_name":"CTCF","level":5,"score":0.4149947166442871},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4064632058143616},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.2304849624633789},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21310549974441528},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/ncrna8030041","doi":"https://doi.org/10.3390/ncrna8030041","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ncrna8030041","pdf_url":"https://www.mdpi.com/2311-553X/8/3/41/pdf?version=1654077581","source":{"id":"https://openalex.org/S2737131929","display_name":"Non-Coding RNA","issn_l":"2311-553X","issn":["2311-553X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Non-Coding RNA","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9227037","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9227037","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Noncoding RNA","raw_type":"Text"},{"id":"pmid:35736638","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35736638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Non-coding RNA","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:6dd7f005a34948d1af40d22cc9d4f57f","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/6dd7f005a34948d1af40d22cc9d4f57f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Non-Coding RNA, Vol 8, Iss 3, p 41 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/ncrna8030041","doi":"https://doi.org/10.3390/ncrna8030041","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ncrna8030041","pdf_url":"https://www.mdpi.com/2311-553X/8/3/41/pdf?version=1654077581","source":{"id":"https://openalex.org/S2737131929","display_name":"Non-Coding RNA","issn_l":"2311-553X","issn":["2311-553X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Non-Coding RNA","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G6362171319","display_name":"Predictive models of boundaries of topologically associated domains (TADs)","funder_award_id":"R15GM137254","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282014842.pdf","grobid_xml":"https://content.openalex.org/works/W4282014842.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1590857219","https://openalex.org/W1793796070","https://openalex.org/W1971578941","https://openalex.org/W1973062929","https://openalex.org/W2070021921","https://openalex.org/W2071271349","https://openalex.org/W2080477348","https://openalex.org/W2097795961","https://openalex.org/W2102619694","https://openalex.org/W2128016314","https://openalex.org/W2154624139","https://openalex.org/W2157512257","https://openalex.org/W2162105224","https://openalex.org/W2401568148","https://openalex.org/W2519616827","https://openalex.org/W2560973135","https://openalex.org/W2614144400","https://openalex.org/W2745848337","https://openalex.org/W2765567136","https://openalex.org/W2767110090","https://openalex.org/W2800216985","https://openalex.org/W2912031480","https://openalex.org/W2927575800","https://openalex.org/W2972617700","https://openalex.org/W3009045514","https://openalex.org/W3023132619","https://openalex.org/W3086918227","https://openalex.org/W3111061871","https://openalex.org/W3115880421","https://openalex.org/W3164374679"],"related_works":["https://openalex.org/W2912031480","https://openalex.org/W3164374679","https://openalex.org/W6958033917","https://openalex.org/W3203011261","https://openalex.org/W3212381356","https://openalex.org/W2752758104","https://openalex.org/W7135384743","https://openalex.org/W2902499476","https://openalex.org/W4317812166","https://openalex.org/W3113245055"],"abstract_inverted_index":{"This":[0],"study":[1],"explored":[2],"the":[3,104,129,133,150,159,195],"relationship":[4],"between":[5],"3D":[6,57,200],"genome":[7,36,58,130,201],"organization":[8,59,173],"and":[9,51,81,115],"RNA\u2013DNA":[10],"triplex-forming":[11,39,74,160],"sites":[12,40,75,86,118,141,161],"of":[13,20,35,41,56,96,125,135,153,158,178,197],"long":[14],"noncoding":[15],"RNAs":[16,21],"(lncRNAs),":[17],"a":[18,88],"group":[19],"that":[22,72,102,132,169,188],"do":[23],"not":[24],"code":[25],"for":[26,90],"proteins":[27],"but":[28],"are":[29,76],"important":[30],"factors":[31],"regulating":[32],"different":[33,154],"aspects":[34],"activity.":[37],"The":[38,84],"anti-sense":[42],"cardiac":[43,182],"lncRNA":[44,136],"GATA6-AS1":[45,73,137],"derived":[46],"from":[47,66],"DBD-Capture-Seq":[48],"were":[49,162],"examined":[50],"compared":[52],"to":[53,138,164,194],"modular":[54],"features":[55],"called":[60],"topologically":[61],"associated":[62],"domains":[63],"(TADs)":[64],"obtained":[65],"Hi-C":[67],"data.":[68],"It":[69],"was":[70],"found":[71,163],"positioned":[77,166],"non-randomly":[78],"in":[79,108,128,167,199],"TADs":[80,198],"their":[82,116],"boundaries.":[83],"triplex":[85,140,190],"showed":[87],"preference":[89],"TAD":[91,109,179],"boundaries":[92,180],"over":[93],"internal":[94],"regions":[95,168],"TADs.":[97],"Computational":[98],"prediction":[99],"analysis":[100],"indicated":[101],"CTCF,":[103],"key":[105],"protein":[106],"involved":[107],"specification,":[110],"may":[111,146,192],"interact":[112],"with":[113,120,142],"GATA6-AS1,":[114],"binding":[117],"correlate":[119],"each":[121],"other.":[122],"Examining":[123],"locations":[124,145],"repeat":[126,155],"elements":[127],"suggests":[131],"ability":[134],"form":[139],"many":[143],"genomic":[144],"be":[147,165],"achieved":[148],"by":[149],"rapid":[151],"expansion":[152],"elements.":[156],"Some":[157],"undergo":[170],"dynamic":[171],"chromatin":[172],"events":[174],"such":[175],"as":[176],"loss/gain":[177],"during":[181],"differentiation.":[183],"These":[184],"observed":[185],"associations":[186],"suggest":[187],"lncRNA\u2013DNA":[189],"formation":[191],"contribute":[193],"specification":[196],"organization.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2022-06-13T00:00:00"}
