{"id":"https://openalex.org/W4281687534","doi":"https://doi.org/10.48550/arxiv.2206.00649","title":"Differentiable programming for functional connectomics","display_name":"Differentiable programming for functional connectomics","publication_year":2022,"publication_date":"2022-05-31","ids":{"openalex":"https://openalex.org/W4281687534","doi":"https://doi.org/10.48550/arxiv.2206.00649"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2206.00649","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2206.00649","pdf_url":"https://arxiv.org/pdf/2206.00649","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"volume":null,"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2206.00649","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060417820","display_name":"Rastko \u0106iri\u0107","orcid":"https://orcid.org/0000-0001-6347-7939","observed_orcids":["https://orcid.org/0000-0001-6347-7939"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ciric, Rastko","raw_affiliation_strings":["Department of Bioengineering, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070255304","display_name":"Armin W. Thomas","orcid":"https://orcid.org/0000-0002-9947-5705","observed_orcids":["https://orcid.org/0000-0002-9947-5705"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas, Armin W.","raw_affiliation_strings":["Stanford Data Science, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Data Science, Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019878487","display_name":"Oscar Est\u00e9ban","orcid":"https://orcid.org/0000-0001-8435-6191","observed_orcids":["https://orcid.org/0000-0001-8435-6191","https://orcid.org/0000-0002-2686-585X"]},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Esteban, Oscar","raw_affiliation_strings":["Department of Radiology, Universit\u00e9 de Lausanne"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Universit\u00e9 de Lausanne","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046868253","display_name":"Russell Alan Poldrack","orcid":"https://orcid.org/0000-0001-6755-0259","observed_orcids":["https://orcid.org/0000-0001-6755-0259"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Poldrack, Russell A.","raw_affiliation_strings":["Department of Psychology, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychology, Stanford University","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/differentiable-programming","display_name":"differentiable programming","score":0.9290000200271606},{"id":"https://openalex.org/keywords/functional-connectomics","display_name":"functional connectomics","score":0.9819999933242798},{"id":"https://openalex.org/keywords/functional-parcellation","display_name":"functional parcellation","score":0.746999979019165},{"id":"https://openalex.org/keywords/unsupervised-learning","display_name":"unsupervised learning","score":0.6899999976158142},{"id":"https://openalex.org/keywords/brain-organization","display_name":"brain organization","score":0.5049999952316284}],"concepts":[{"id":"https://openalex.org/C2779097318","wikidata":"https://www.wikidata.org/wiki/Q2993446","display_name":"Connectomics","level":4,"score":0.9390537738800049},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7517951726913452},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.6956817507743835},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6500163078308105},{"id":"https://openalex.org/C202615002","wikidata":"https://www.wikidata.org/wiki/Q783507","display_name":"Differentiable function","level":2,"score":0.5931631326675415},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48969605565071106},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4149743318557739},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.40650278329849243},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25966060161590576},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.134782612323761},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.12190422415733337},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09060743451118469},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.08614537119865417},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2206.00649","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2206.00649","pdf_url":"https://arxiv.org/pdf/2206.00649","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2206.00649","doi":"https://doi.org/10.48550/arxiv.2206.00649","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2206.00649","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2206.00649","doi":null,"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2206.00649","pdf_url":"https://arxiv.org/pdf/2206.00649","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4382046778","https://openalex.org/W2564964696","https://openalex.org/W4403090531","https://openalex.org/W7126214000","https://openalex.org/W7098485137","https://openalex.org/W3006108323","https://openalex.org/W4399344472","https://openalex.org/W2619157383","https://openalex.org/W3211825304","https://openalex.org/W3006025189"],"abstract_inverted_index":{"Mapping":[0],"the":[1,5,92,99,102,107,123,170],"functional":[2,18,52,70,157,176],"connectome":[3],"has":[4],"potential":[6],"to":[7,25,104,130,137],"uncover":[8],"key":[9],"insights":[10],"into":[11],"brain":[12],"organisation.":[13],"However,":[14],"existing":[15],"workflows":[16],"for":[17,119,175],"connectomics":[19,53],"are":[20,148],"limited":[21],"in":[22,51,134,141,153],"their":[23],"adaptability":[24],"new":[26,40,139],"data,":[27],"and":[28,43,87,95,136,160,167],"principled":[29],"workflow":[30,62],"design":[31],"is":[32],"a":[33,39,68,81,115],"challenging":[34],"combinatorial":[35],"problem.":[36],"We":[37],"introduce":[38],"analytic":[41],"paradigm":[42],"software":[44,168],"toolbox":[45],"that":[46,71,77],"implements":[47],"common":[48],"operations":[49],"used":[50],"as":[54,65],"fully":[55],"differentiable":[56,69,75,120,146,173],"processing":[57,127],"blocks.":[58],"Under":[59],"this":[60,110],"paradigm,":[61],"configurations":[63],"exist":[64],"reparameterisations":[66],"of":[67,98,106,117,125,172],"interpolates":[72],"them.":[73],"The":[74],"program":[76],"we":[78,113],"envision":[79],"occupies":[80],"niche":[82],"midway":[83],"between":[84],"traditional":[85],"pipelines":[86],"end-to-end":[88],"neural":[89],"networks,":[90],"combining":[91],"glass-box":[93],"tractability":[94],"domain":[96],"knowledge":[97,133],"former":[100],"with":[101,150],"amenability":[103],"optimisation":[105],"latter.":[108],"In":[109],"preliminary":[111],"work,":[112],"provide":[114],"proof":[116],"concept":[118],"connectomics,":[121],"demonstrating":[122],"capacity":[124],"our":[126,165],"blocks":[128],"both":[129],"recapitulate":[131],"canonical":[132],"neuroscience":[135],"make":[138],"discoveries":[140],"an":[142],"unsupervised":[143],"setting.":[144],"Our":[145],"modules":[147],"competitive":[149],"state-of-the-art":[151],"methods":[152],"problem":[154],"domains":[155],"including":[156],"parcellation,":[158],"denoising,":[159],"covariance":[161],"modelling.":[162],"Taken":[163],"together,":[164],"results":[166],"demonstrate":[169],"promise":[171],"programming":[174],"connectomics.":[177]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2022-06-13T00:00:00"}