{"id":"https://openalex.org/W4256353202","doi":"https://doi.org/10.1504/ijcbdd.2019.099761","title":"Managing data provenance for bioinformatics workflows using AProvBio","display_name":"Managing data provenance for bioinformatics workflows using AProvBio","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W4256353202","doi":"https://doi.org/10.1504/ijcbdd.2019.099761"},"language":"en","primary_location":{"id":"doi:10.1504/ijcbdd.2019.099761","doi":"https://doi.org/10.1504/ijcbdd.2019.099761","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijcbdd.2019.099761","pdf_url":null,"source":{"id":"https://openalex.org/S200215862","display_name":"International Journal of Computational Biology and Drug Design","issn_l":"1756-0756","issn":["1756-0756","1756-0764"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Computational Biology and Drug Design","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Rodrigo Almeida","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Rodrigo Almeida","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004814984","display_name":"Waldeyr Mendes Cordeiro da Silva","orcid":"https://orcid.org/0000-0002-8660-6331","observed_orcids":["https://orcid.org/0000-0002-8660-6331"]},"institutions":[{"id":"https://openalex.org/I4210132153","display_name":"Instituto Federal de Goi\u00e1s","ror":"https://ror.org/03gq9pd80","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210132153"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Waldeyr Mendes Cordeiro Da Silva","raw_affiliation_strings":["Federal Institute of Goi\u00e1s IFG, Formosa, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Federal Institute of Goi\u00e1s IFG, Formosa, Brazil","institution_ids":["https://openalex.org/I4210132153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041493391","display_name":"Klayton Rodrigues de Castro","orcid":"https://orcid.org/0000-0003-0544-4527","observed_orcids":["https://orcid.org/0000-0003-0544-4527"]},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Klayton Castro","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074998541","display_name":"N.A. Alet","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"N.A. Alet&","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004499747","display_name":"N.A. eacute","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"N.A. eacute","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"ia Patricia Favacho De Ara&","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"ia Patricia Favacho De Ara&","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044069421","display_name":"N.A. uacute","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"N.A. uacute","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040708919","display_name":"Narae Jo","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"N.A. jo","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071276748","display_name":"Maria Em\u00edlia M. T. Walter","orcid":"https://orcid.org/0000-0001-6822-931X","observed_orcids":["https://orcid.org/0000-0001-6822-931X"]},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria Em\u00edlia Machado Telles Walter","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085416987","display_name":"S\u00e9rgio Lifschitz","orcid":"https://orcid.org/0000-0003-3073-3734","observed_orcids":["https://orcid.org/0000-0003-3073-3734"]},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Sergio Lifschitz","raw_affiliation_strings":["Pontifical Catholic University of Rio de Janeiro, Department of Informatics, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pontifical Catholic University of Rio de Janeiro, Department of Informatics, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054089208","display_name":"Maristela Terto de Holanda","orcid":"https://orcid.org/0000-0002-0883-2579","observed_orcids":["https://orcid.org/0000-0002-0883-2579"]},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maristela Holanda","raw_affiliation_strings":["Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bras\u00edlia, Bras\u00edlia, 70910-900, Brazil","institution_ids":["https://openalex.org/I150729083"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.4812,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.89164367,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":96},"biblio":{"volume":"12","issue":"2","first_page":"153","last_page":"153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-provenance","display_name":"data provenance","score":0.9980000257492065},{"id":"https://openalex.org/keywords/bioinformatics-pipeline","display_name":"bioinformatics pipeline","score":0.9739999771118164},{"id":"https://openalex.org/keywords/graph-databases","display_name":"graph databases","score":0.7120000123977661},{"id":"https://openalex.org/keywords/workflow-simulation","display_name":"workflow simulation","score":0.5040000081062317}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8983410596847534},{"id":"https://openalex.org/C2780049196","wikidata":"https://www.wikidata.org/wiki/Q23582628","display_name":"Provenance","level":2,"score":0.7931355237960815},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7357527017593384},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5554590225219727},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.5012798309326172},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4420168697834015},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3941030502319336},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3656351864337921},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16431862115859985},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0856594443321228},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.06518858671188354},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1504/ijcbdd.2019.099761","doi":"https://doi.org/10.1504/ijcbdd.2019.099761","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijcbdd.2019.099761","pdf_url":null,"source":{"id":"https://openalex.org/S200215862","display_name":"International Journal of Computational Biology and Drug Design","issn_l":"1756-0756","issn":["1756-0756","1756-0764"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Computational Biology and Drug Design","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2774490160","https://openalex.org/W1994924643","https://openalex.org/W2081795602","https://openalex.org/W3212300862","https://openalex.org/W2216827723","https://openalex.org/W2922727097","https://openalex.org/W2080071958","https://openalex.org/W1971498508","https://openalex.org/W2585932170","https://openalex.org/W1504092882"],"abstract_inverted_index":{"Scientific":[0],"experiments":[1],"in":[2,85],"bioinformatics":[3,46],"are":[4],"often":[5],"executed":[6],"as":[7],"computational":[8],"workflows.":[9],"Data":[10],"provenance":[11,44,84],"involves":[12],"documenting":[13],"the":[14,17,20,24,27,38,49,64,82,106],"history,":[15],"and":[16,40,63,76,94,100],"paths":[18],"of":[19,29,42,58,97,103,109],"input":[21],"data,":[22],"from":[23],"beginning":[25],"to":[26],"end":[28],"an":[30,34,101],"experiment.":[31],"AProvBio":[32,53,104],"is":[33],"architecture":[35],"that":[36],"enables":[37],"capture":[39],"storage":[41],"data":[43,59,83],"for":[45,80],"workflows":[47],"using":[48],"PROV-DM":[50],"standard":[51],"model.":[52],"works":[54],"with":[55],"three":[56],"types":[57],"provenance:":[60],"prospect,":[61],"retrospect,":[62],"user-defined":[65],"type.":[66],"Given":[67],"how":[68],"graphs":[69],"conveniently":[70],"express":[71],"PROV-DM,":[72],"we":[73],"have":[74],"designed":[75],"implemented":[77],"a":[78,86],"simulator":[79],"storing":[81],"graph":[87],"database":[88],"system.":[89],"This":[90],"paper":[91],"presents":[92],"details":[93],"implementation":[95],"aspects":[96],"our":[98],"architecture,":[99],"evaluation":[102],"through":[105],"carrying":[107],"out":[108],"two":[110],"real":[111],"case":[112],"scenarios.":[113]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-09-29T14:09:16.559479","created_date":"2022-05-12T00:00:00"}
