{"id":"https://openalex.org/W4253070181","doi":"https://doi.org/10.1364/cleo_at.2019.jm3m.5","title":"PhaseStain: Deep Learning-based Histological Staining of Quantitative Phase Images","display_name":"PhaseStain: Deep Learning-based Histological Staining of Quantitative Phase Images","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W4253070181","doi":"https://doi.org/10.1364/cleo_at.2019.jm3m.5"},"language":"en","primary_location":{"id":"doi:10.1364/cleo_at.2019.jm3m.5","doi":"https://doi.org/10.1364/cleo_at.2019.jm3m.5","is_oa":false,"landing_page_url":"https://doi.org/10.1364/cleo_at.2019.jm3m.5","pdf_url":null,"source":{"id":"https://openalex.org/S4306418073","display_name":"Conference on Lasers and Electro-Optics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Conference on Lasers and Electro-Optics","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058629781","display_name":"Yair Rivenson","orcid":"https://orcid.org/0000-0003-1132-0715","observed_orcids":["https://orcid.org/0000-0003-1132-0715"]},"institutions":[{"id":"https://openalex.org/I142207940","display_name":"California NanoSystems Institute","ror":"https://ror.org/00q7fqf35","country_code":"US","type":"facility","lineage":["https://openalex.org/I142207940","https://openalex.org/I154570441","https://openalex.org/I161318765"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yair Rivenson","raw_affiliation_strings":["Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101803488","display_name":"Tairan Liu","orcid":"https://orcid.org/0000-0001-6157-425X","observed_orcids":["https://orcid.org/0000-0001-6157-425X","https://orcid.org/0009-0007-9549-9762"]},"institutions":[{"id":"https://openalex.org/I142207940","display_name":"California NanoSystems Institute","ror":"https://ror.org/00q7fqf35","country_code":"US","type":"facility","lineage":["https://openalex.org/I142207940","https://openalex.org/I154570441","https://openalex.org/I161318765"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tairan Liu","raw_affiliation_strings":["Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035618071","display_name":"Zhensong Wei","orcid":"https://orcid.org/0000-0003-3523-5689","observed_orcids":["https://orcid.org/0000-0003-3523-5689"]},"institutions":[{"id":"https://openalex.org/I142207940","display_name":"California NanoSystems Institute","ror":"https://ror.org/00q7fqf35","country_code":"US","type":"facility","lineage":["https://openalex.org/I142207940","https://openalex.org/I154570441","https://openalex.org/I161318765"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhensong Wei","raw_affiliation_strings":["Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026608291","display_name":"Kevin d. Haan","orcid":"https://orcid.org/0000-0002-7802-3857","observed_orcids":["https://orcid.org/0000-0002-7802-3857"]},"institutions":[{"id":"https://openalex.org/I142207940","display_name":"California NanoSystems Institute","ror":"https://ror.org/00q7fqf35","country_code":"US","type":"facility","lineage":["https://openalex.org/I142207940","https://openalex.org/I154570441","https://openalex.org/I161318765"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kevin de Haan","raw_affiliation_strings":["Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100449669","display_name":"Yibo Zhang","orcid":"https://orcid.org/0000-0002-5636-7085","observed_orcids":["https://orcid.org/0000-0002-5636-7085"]},"institutions":[{"id":"https://openalex.org/I142207940","display_name":"California NanoSystems Institute","ror":"https://ror.org/00q7fqf35","country_code":"US","type":"facility","lineage":["https://openalex.org/I142207940","https://openalex.org/I154570441","https://openalex.org/I161318765"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yibo Zhang","raw_affiliation_strings":["Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016207990","display_name":"Aydogan \u00d6zcan","orcid":"https://orcid.org/0000-0002-0717-683X","observed_orcids":["https://orcid.org/0000-0002-0717-683X"]},"institutions":[{"id":"https://openalex.org/I142207940","display_name":"California NanoSystems Institute","ror":"https://ror.org/00q7fqf35","country_code":"US","type":"facility","lineage":["https://openalex.org/I142207940","https://openalex.org/I154570441","https://openalex.org/I161318765"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aydogan Ozcan","raw_affiliation_strings":["Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","Department of Surgery, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"California NanoSystems Institute (CNSI, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Surgery, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Electrical and Computer Engineering Department, David Geffen School of Medicine, University of California, Los Angeles, CA, 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016207990","https://openalex.org/A5026608291","https://openalex.org/A5035618071","https://openalex.org/A5058629781","https://openalex.org/A5100449669","https://openalex.org/A5101803488"],"corresponding_institution_ids":["https://openalex.org/I142207940","https://openalex.org/I161318765"],"apc_list":null,"apc_paid":null,"fwci":2.3766,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.9092448,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"6","issue":null,"first_page":"JM3M.5","last_page":"JM3M.5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11897","display_name":"Digital Holography and Microscopy","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11897","display_name":"Digital Holography and Microscopy","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12050","display_name":"Optical Polarization and Ellipsometry","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11183","display_name":"Advanced X-ray Imaging Techniques","score":0.0026000000070780516,"subfield":{"id":"https://openalex.org/subfields/3108","display_name":"Radiation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quantitative-phase-imaging","display_name":"quantitative phase imaging","score":0.9160000085830688},{"id":"https://openalex.org/keywords/tissue-staining","display_name":"tissue staining","score":0.7929999828338623},{"id":"https://openalex.org/keywords/digital-staining","display_name":"digital staining","score":0.7770000100135803},{"id":"https://openalex.org/keywords/bright-field-microscopy","display_name":"bright-field microscopy","score":0.7080000042915344},{"id":"https://openalex.org/keywords/deep-learning","display_name":"deep learning","score":0.5320000052452087}],"concepts":[{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.8053391575813293},{"id":"https://openalex.org/C2781294515","wikidata":"https://www.wikidata.org/wiki/Q2733470","display_name":"Stain","level":3,"score":0.7387126684188843},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5883545279502869},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.5091275572776794},{"id":"https://openalex.org/C2994073649","wikidata":"https://www.wikidata.org/wiki/Q7180908","display_name":"Phase imaging","level":3,"score":0.5000030994415283},{"id":"https://openalex.org/C14764753","wikidata":"https://www.wikidata.org/wiki/Q905225","display_name":"Bright-field microscopy","level":3,"score":0.4613483250141144},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44398459792137146},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.43825873732566833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42526233196258545},{"id":"https://openalex.org/C44280652","wikidata":"https://www.wikidata.org/wiki/Q104837","display_name":"Phase (matter)","level":2,"score":0.4130637049674988},{"id":"https://openalex.org/C151193507","wikidata":"https://www.wikidata.org/wiki/Q898815","display_name":"Phase contrast microscopy","level":2,"score":0.412164568901062},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.19044229388237},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.12082108855247498},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10586628317832947},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08947160840034485},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1364/cleo_at.2019.jm3m.5","doi":"https://doi.org/10.1364/cleo_at.2019.jm3m.5","is_oa":false,"landing_page_url":"https://doi.org/10.1364/cleo_at.2019.jm3m.5","pdf_url":null,"source":{"id":"https://openalex.org/S4306418073","display_name":"Conference on Lasers and Electro-Optics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Conference on Lasers and Electro-Optics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2124188012","https://openalex.org/W2559655401"],"related_works":["https://openalex.org/W2884160046","https://openalex.org/W3081209605","https://openalex.org/W3016351208","https://openalex.org/W6959907831","https://openalex.org/W4244855428","https://openalex.org/W4415589872","https://openalex.org/W4405446583","https://openalex.org/W4399766816","https://openalex.org/W3012089763","https://openalex.org/W3002164240"],"abstract_inverted_index":{"We":[0],"demonstrate":[1],"a":[2],"digital":[3],"staining":[4],"framework":[5],"that":[6],"transforms":[7],"quantitative":[8],"phase":[9],"images":[10,20],"of":[11,21,29],"label-free":[12],"tissue":[13],"sections":[14],"to":[15],"match":[16],"the":[17,22],"brightfield":[18],"microscopy":[19],"same":[23],"sections,":[24],"after":[25],"histological":[26],"staining.":[27],"Inference":[28],"multiple":[30],"tissue-stain":[31],"combinations":[32],"is":[33],"demonstrated.":[34]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-10-24T09:50:30.924529","created_date":"2022-05-12T00:00:00"}