{"id":"https://openalex.org/W4247634459","doi":"https://doi.org/10.3410/f.733431767.793552807","title":"Faculty Opinions recommendation of Diversity and evolution of the emerging Pandoraviridae family.","display_name":"Faculty Opinions recommendation of Diversity and evolution of the emerging Pandoraviridae family.","publication_year":2018,"publication_date":"2018-11-12","ids":{"openalex":"https://openalex.org/W4247634459","doi":"https://doi.org/10.3410/f.733431767.793552807"},"language":"en","primary_location":{"id":"doi:10.3410/f.733431767.793552807","doi":"https://doi.org/10.3410/f.733431767.793552807","is_oa":true,"landing_page_url":"https://doi.org/10.3410/f.733431767.793552807","pdf_url":"https://facultyopinions.com/download/733431767","source":{"id":"https://openalex.org/S4363604054","display_name":"Faculty Opinions \u2013 Post-Publication Peer Review of the Biomedical Literature","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Faculty Opinions \u2013 Post-Publication Peer Review of the Biomedical Literature","raw_type":"dataset"},"volume":null,"type":"peer-review","is_traditional":false,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://facultyopinions.com/download/733431767","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003853124","display_name":"Eugene K. Koonin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210100449","display_name":"Institut de Microbiologie de la M\u00e9diterran\u00e9e","ror":"https://ror.org/012t91r40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210100449"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR","US"],"is_corresponding":true,"raw_author_name":"Eugene Koonin","raw_affiliation_strings":["National Center for Biotechnology Information (NCBI), National Institutes of Health (NIH), USA","Aix Marseille Univ, CNRS, Structural and Genomic Information Laboratory, UMR 7256 (IMM FR 3479), 163 Avenue de Luminy, Case 934, 13288 Marseille cedex 9, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information (NCBI), National Institutes of Health (NIH), USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Aix Marseille Univ, CNRS, Structural and Genomic Information Laboratory, UMR 7256 (IMM FR 3479), 163 Avenue de Luminy, Case 934, 13288 Marseille cedex 9, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210100449","https://openalex.org/I4387154720"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003853124"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I1299303238","https://openalex.org/I21491767","https://openalex.org/I4210100449","https://openalex.org/I4210109390","https://openalex.org/I4387154720"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.8339999914169312,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.8339999914169312,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.05400000140070915,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11916","display_name":"Legionella and Acanthamoeba research","score":0.02810000069439411,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/giant-viruses","display_name":"giant viruses","score":0.9179999828338623},{"id":"https://openalex.org/keywords/acanthamoeba","display_name":"Acanthamoeba","score":0.9520000219345093},{"id":"https://openalex.org/keywords/pan-genome","display_name":"pan-genome","score":0.8149999976158142},{"id":"https://openalex.org/keywords/genome-evolution","display_name":"genome evolution","score":0.5350000262260437},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"comparative genomics","score":0.7760000228881836},{"id":"https://openalex.org/keywords/non-coding-transcripts","display_name":"non-coding transcripts","score":0.8309999704360962},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.45899999141693115},{"id":"https://openalex.org/keywords/strain-specific-genes","display_name":"strain-specific genes","score":0.6370000243186951}],"concepts":[{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.7843071222305298},{"id":"https://openalex.org/C53553401","wikidata":"https://www.wikidata.org/wiki/Q47307","display_name":"Genealogy","level":1,"score":0.4596720337867737},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39650923013687134},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3510991930961609},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3430635929107666},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.33868861198425293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30710187554359436},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2583765983581543},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.21729224920272827},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.18098708987236023},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.10737040638923645}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3410/f.733431767.793552807","doi":"https://doi.org/10.3410/f.733431767.793552807","is_oa":true,"landing_page_url":"https://doi.org/10.3410/f.733431767.793552807","pdf_url":"https://facultyopinions.com/download/733431767","source":{"id":"https://openalex.org/S4363604054","display_name":"Faculty Opinions \u2013 Post-Publication Peer Review of the Biomedical Literature","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Faculty Opinions \u2013 Post-Publication Peer Review of the Biomedical Literature","raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.3410/f.733431767.793552807","doi":"https://doi.org/10.3410/f.733431767.793552807","is_oa":true,"landing_page_url":"https://doi.org/10.3410/f.733431767.793552807","pdf_url":"https://facultyopinions.com/download/733431767","source":{"id":"https://openalex.org/S4363604054","display_name":"Faculty Opinions \u2013 Post-Publication Peer Review of the Biomedical Literature","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Faculty Opinions \u2013 Post-Publication Peer Review of the Biomedical Literature","raw_type":"dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1502922282","display_name":null,"funder_award_id":"ANR-10-INBS-08","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3023429086","display_name":"Functional and molecular characterization of Pandoraviruses","funder_award_id":"ANR-14-CE14-0023","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3072884726","display_name":null,"funder_award_id":"ANR-11-INSB-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4336457782","display_name":null,"funder_award_id":"ANR-10-INBS-08-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7188580438","display_name":null,"funder_award_id":"ANR-11-INSB-0013","funder_id":"https://openalex.org/F4320316916","funder_display_name":"Institut Fran\u00e7ais de Bioinformatique"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G814059","display_name":null,"funder_award_id":"ANR-10-LABX-49-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320316916","display_name":"Institut Fran\u00e7ais de Bioinformatique","ror":"https://ror.org/045f7pv37"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4247634459.pdf","grobid_xml":"https://content.openalex.org/works/W4247634459.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W76962206","https://openalex.org/W1530978248","https://openalex.org/W1531385547","https://openalex.org/W1551404386","https://openalex.org/W1586542273","https://openalex.org/W1967090894","https://openalex.org/W1971731200","https://openalex.org/W1978932965","https://openalex.org/W1982308111","https://openalex.org/W1988640124","https://openalex.org/W1990397154","https://openalex.org/W1996423252","https://openalex.org/W2003799941","https://openalex.org/W2009165504","https://openalex.org/W2011617240","https://openalex.org/W2014685224","https://openalex.org/W2031742656","https://openalex.org/W2056699111","https://openalex.org/W2068378652","https://openalex.org/W2087923822","https://openalex.org/W2088934822","https://openalex.org/W2093113214","https://openalex.org/W2094715989","https://openalex.org/W2101360032","https://openalex.org/W2104690497","https://openalex.org/W2113048642","https://openalex.org/W2126064524","https://openalex.org/W2127501111","https://openalex.org/W2127673162","https://openalex.org/W2128643990","https://openalex.org/W2131697677","https://openalex.org/W2133537175","https://openalex.org/W2135581618","https://openalex.org/W2156690214","https://openalex.org/W2158343766","https://openalex.org/W2160034397","https://openalex.org/W2166698604","https://openalex.org/W2262827167","https://openalex.org/W2297066012","https://openalex.org/W2297069214","https://openalex.org/W2414506155","https://openalex.org/W2479687413","https://openalex.org/W2575382994","https://openalex.org/W2581435909","https://openalex.org/W2608157918","https://openalex.org/W4234586755","https://openalex.org/W4252767574","https://openalex.org/W6804112866"],"related_works":["https://openalex.org/W2953252177","https://openalex.org/W2904305171","https://openalex.org/W2910653636","https://openalex.org/W4283325444","https://openalex.org/W2808703726","https://openalex.org/W2616298839","https://openalex.org/W2972607384","https://openalex.org/W2031742656","https://openalex.org/W7214714224","https://openalex.org/W2904728810"],"abstract_inverted_index":{"With":[0],"DNA":[1],"genomes":[2,61],"reaching":[3],"2.5":[4],"Mb":[5],"packed":[6],"in":[7,30],"particles":[8],"of":[9,33,52,59,78,94,107,135],"bacterium-like":[10],"shape":[11],"and":[12,40,65,72,115],"dimension,":[13],"the":[14,23,47,53,60,75,85,91,108,133,136],"first":[15,48],"two":[16],"Acanthamoeba-infecting":[17],"pandoraviruses":[18,86],"remained":[19],"up":[20],"to":[21,45,120,132],"now":[22,43],"most":[24,106],"complex":[25],"viruses":[26],"since":[27],"their":[28],"discovery":[29],"2013.Our":[31],"isolation":[32],"three":[34],"new":[35],"strains":[36],"from":[37],"distant":[38],"locations":[39],"environments":[41],"is":[42,96],"used":[44],"perform":[46],"comparative":[49],"genomics":[50],"analysis":[51],"emerging":[54],"worldwide-distributed":[55],"Pandoraviridae":[56],"family.Thorough":[57],"annotation":[58],"combining":[62],"transcriptomic,":[63],"proteomic,":[64],"bioinformatic":[66],"analyses":[67],"reveals":[68],"many":[69],"non-coding":[70],"transcripts":[71],"significantly":[73],"reduces":[74],"former":[76],"set":[77],"predicted":[79],"protein-coding":[80],"genes.Here":[81],"we":[82,123],"show":[83],"that":[84,125],"exhibit":[87,116],"an":[88],"open":[89],"pan-genome,":[90],"enormous":[92],"size":[93],"which":[95],"not":[97],"adequately":[98],"explained":[99],"by":[100],"gene":[101,128],"duplications":[102],"or":[103],"horizontal":[104],"transfers.As":[105],"strain-specific":[109],"genes":[110],"have":[111],"no":[112],"extant":[113],"homolog":[114],"statistical":[117],"features":[118],"comparable":[119],"intergenic":[121],"regions,":[122],"suggest":[124],"de":[126],"novo":[127],"creation":[129],"could":[130],"contribute":[131],"evolution":[134],"giant":[137],"pandoravirus":[138],"genomes.":[139]},"counts_by_year":[],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2022-05-12T00:00:00"}
