{"id":"https://openalex.org/W4242807014","doi":"https://doi.org/10.1134/s0003683815010147","title":"Application of bioinformatics tools and databases in microbial dehalogenation research: A review","display_name":"Application of bioinformatics tools and databases in microbial dehalogenation research: A review","publication_year":2014,"publication_date":"2014-12-20","ids":{"openalex":"https://openalex.org/W4242807014","doi":"https://doi.org/10.1134/s0003683815010147"},"language":"en","primary_location":{"id":"doi:10.1134/s0003683815010147","doi":"https://doi.org/10.1134/s0003683815010147","is_oa":false,"landing_page_url":"https://doi.org/10.1134/s0003683815010147","pdf_url":null,"source":{"id":"https://openalex.org/S37200030","display_name":"Applied Biochemistry and Microbiology","issn_l":"0003-6838","issn":["0003-6838","1608-3024","3034-574X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320267","host_organization_name":"Pleiades Publishing","host_organization_lineage":["https://openalex.org/P4310320267","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Pleiades Publishing","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Biochemistry and Microbiology","raw_type":"journal-article"},"volume":null,"type":"review","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055205214","display_name":"Raghunath Satpathy","orcid":"https://orcid.org/0000-0001-5296-8492","observed_orcids":["https://orcid.org/0000-0001-5296-8492"]},"institutions":[{"id":"https://openalex.org/I112754052","display_name":"Sambalpur University","ror":"https://ror.org/04s222234","country_code":"IN","type":"education","lineage":["https://openalex.org/I112754052"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"R. Satpathy","raw_affiliation_strings":["School of Life science, Sambalpur University, Jyoti vihar, Burla, Odisha, 768019, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life science, Sambalpur University, Jyoti vihar, Burla, Odisha, 768019, India","institution_ids":["https://openalex.org/I112754052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034760600","display_name":"V. Badireenath Konkimalla","orcid":"https://orcid.org/0000-0003-3699-7490","observed_orcids":["https://orcid.org/0000-0003-3699-7490"]},"institutions":[{"id":"https://openalex.org/I163389970","display_name":"National Institute of Science Education and Research","ror":"https://ror.org/02r2k1c68","country_code":"IN","type":"education","lineage":["https://openalex.org/I163389970","https://openalex.org/I200207707"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"V. B. Konkimalla","raw_affiliation_strings":["School of Biological Sciences, National Institute of Science Education and Research (NISER), Bhubaneswar, Odisha, 751005, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, National Institute of Science Education and Research (NISER), Bhubaneswar, Odisha, 751005, India","institution_ids":["https://openalex.org/I163389970"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001659020","display_name":"Jagnyeswar Ratha","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I112754052","display_name":"Sambalpur University","ror":"https://ror.org/04s222234","country_code":"IN","type":"education","lineage":["https://openalex.org/I112754052"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"J. Ratha","raw_affiliation_strings":["School of Life science, Sambalpur University, Jyoti vihar, Burla, Odisha, 768019, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life science, Sambalpur University, Jyoti vihar, Burla, Odisha, 768019, India","institution_ids":["https://openalex.org/I112754052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5055205214"],"corresponding_institution_ids":["https://openalex.org/I112754052"],"apc_list":null,"apc_paid":null,"fwci":0.025,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.13559322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"51","issue":"1","first_page":"11","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10324","display_name":"Microbial bioremediation and biosurfactants","score":0.9434000253677368,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10324","display_name":"Microbial bioremediation and biosurfactants","score":0.9434000253677368,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.02590000070631504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11136","display_name":"Enzyme-mediated dye degradation","score":0.00989999994635582,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organohalogen-compounds","display_name":"organohalogen compounds","score":0.7590000033378601},{"id":"https://openalex.org/keywords/biodegradation","display_name":"biodegradation","score":0.8949999809265137},{"id":"https://openalex.org/keywords/biological-databases","display_name":"biological databases","score":0.7170000076293945},{"id":"https://openalex.org/keywords/protein-structure-modeling","display_name":"protein structure modeling","score":0.6869999766349792},{"id":"https://openalex.org/keywords/metabolic-pathway-reconstruction","display_name":"metabolic pathway reconstruction","score":0.9769999980926514},{"id":"https://openalex.org/keywords/halogenated-pollutants","display_name":"halogenated pollutants","score":0.6800000071525574}],"concepts":[{"id":"https://openalex.org/C65973085","wikidata":"https://www.wikidata.org/wiki/Q888529","display_name":"Halogenation","level":2,"score":0.7528865337371826},{"id":"https://openalex.org/C2777485300","wikidata":"https://www.wikidata.org/wiki/Q5252213","display_name":"Dehalogenase","level":3,"score":0.5702495574951172},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4813826382160187},{"id":"https://openalex.org/C157021035","wikidata":"https://www.wikidata.org/wiki/Q696715","display_name":"Biodegradation","level":2,"score":0.47591859102249146},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.44510528445243835},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3739231526851654},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3488125801086426},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23615685105323792},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21575570106506348},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16871002316474915},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.1628457009792328},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13508003950119019}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1134/s0003683815010147","doi":"https://doi.org/10.1134/s0003683815010147","is_oa":false,"landing_page_url":"https://doi.org/10.1134/s0003683815010147","pdf_url":null,"source":{"id":"https://openalex.org/S37200030","display_name":"Applied Biochemistry and Microbiology","issn_l":"0003-6838","issn":["0003-6838","1608-3024","3034-574X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320267","host_organization_name":"Pleiades Publishing","host_organization_lineage":["https://openalex.org/P4310320267","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Pleiades Publishing","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Biochemistry and Microbiology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":67,"referenced_works":["https://openalex.org/W172445582","https://openalex.org/W182634393","https://openalex.org/W1529730227","https://openalex.org/W1556816260","https://openalex.org/W1668755435","https://openalex.org/W1832111412","https://openalex.org/W1965895386","https://openalex.org/W1966982678","https://openalex.org/W1968302589","https://openalex.org/W1973616307","https://openalex.org/W1977828233","https://openalex.org/W1981733881","https://openalex.org/W1987758828","https://openalex.org/W1988202385","https://openalex.org/W1988843656","https://openalex.org/W1989309915","https://openalex.org/W1990257528","https://openalex.org/W1991681537","https://openalex.org/W1995845103","https://openalex.org/W1999325726","https://openalex.org/W2005642805","https://openalex.org/W2010678564","https://openalex.org/W2017811612","https://openalex.org/W2023014243","https://openalex.org/W2027161680","https://openalex.org/W2033397519","https://openalex.org/W2035240910","https://openalex.org/W2037638598","https://openalex.org/W2069689025","https://openalex.org/W2075505552","https://openalex.org/W2082493991","https://openalex.org/W2087185452","https://openalex.org/W2088804641","https://openalex.org/W2089835376","https://openalex.org/W2093691795","https://openalex.org/W2101891105","https://openalex.org/W2103611437","https://openalex.org/W2105942464","https://openalex.org/W2107194519","https://openalex.org/W2108570684","https://openalex.org/W2109543248","https://openalex.org/W2113860028","https://openalex.org/W2118877126","https://openalex.org/W2121471509","https://openalex.org/W2122019155","https://openalex.org/W2124114297","https://openalex.org/W2125041596","https://openalex.org/W2127563440","https://openalex.org/W2128242967","https://openalex.org/W2129107245","https://openalex.org/W2131621230","https://openalex.org/W2132133570","https://openalex.org/W2133657715","https://openalex.org/W2142040022","https://openalex.org/W2152905639","https://openalex.org/W2156610741","https://openalex.org/W2156701707","https://openalex.org/W2159833474","https://openalex.org/W2160870047","https://openalex.org/W2162082704","https://openalex.org/W2164442918","https://openalex.org/W2169753153","https://openalex.org/W2314639778","https://openalex.org/W2434885320","https://openalex.org/W2547776067","https://openalex.org/W4252114087","https://openalex.org/W4307492553"],"related_works":["https://openalex.org/W2272569520","https://openalex.org/W3217665950","https://openalex.org/W3179093744","https://openalex.org/W609543768","https://openalex.org/W41527061","https://openalex.org/W1933628209","https://openalex.org/W7202160755","https://openalex.org/W2156362640","https://openalex.org/W2341633536","https://openalex.org/W4300979099"],"abstract_inverted_index":{"Microbial":[0],"dehalogenation":[1,71,159,202],"is":[2],"a":[3,22,59,84,117,122],"biochemical":[4],"process":[5],"in":[6,14,33,91,156,178,201],"which":[7],"the":[8,48,54,81,98,114,148,157],"halogenated":[9,38],"substances":[10],"are":[11,51],"catalyzed":[12],"enzymatically":[13],"to":[15,44,52,87,106,172],"their":[16],"non-halogenated":[17],"form.":[18],"The":[19],"microorganisms":[20,69],"have":[21,73,103,168],"wide":[23],"range":[24],"of":[25,36,56,65,94,116,143,150,177,184,197],"organohalogen":[26],"degradation":[27],"ability":[28],"both":[29],"explicit":[30],"and":[31,76,135,153,195],"non-specific":[32],"nature.":[34],"Most":[35],"these":[37,66,108],"organic":[39],"compounds":[40],"being":[41],"pollutants":[42],"need":[43],"be":[45],"remediated;":[46],"therefore,":[47],"current":[49],"approaches":[50],"explore":[53],"potential":[55],"microbes":[57],"at":[58],"molecular":[60],"level":[61],"for":[62],"effective":[63],"biodegradation":[64,133],"substances.":[67],"Several":[68],"with":[70,113,161],"activity":[72],"been":[74,104,170],"identified":[75],"characterized.":[77],"In":[78],"this":[79,92],"aspect,":[80],"bioinformatics":[82,144],"plays":[83],"key":[85],"role":[86],"gain":[88],"deeper":[89],"knowledge":[90],"field":[93],"dehalogenation.":[95],"To":[96],"facilitate":[97],"data":[99,109],"mining,":[100],"many":[101],"tools":[102,155],"developed":[105],"annotate":[107],"from":[110],"databases.":[111],"Therefore,":[112],"discovery":[115],"microorganism":[118],"one":[119],"can":[120,126],"predict":[121],"gene/protein,":[123],"sequence":[124],"analysis,":[125,132],"perform":[127],"structural":[128],"modelling,":[129,188],"metabolic":[130,198],"pathway":[131],"study":[134,194],"so":[136],"on.":[137],"This":[138],"review":[139],"highlights":[140],"various":[141,151],"methods":[142,181],"approach":[145],"that":[146,182],"describes":[147],"application":[149],"databases":[152],"specific":[154],"microbial":[158],"fields":[160],"special":[162],"focus":[163],"on":[164],"dehalogenase":[165],"enzymes.":[166],"Attempts":[167],"also":[169],"made":[171],"decipher":[173],"some":[174],"recent":[175],"applications":[176],"silico":[179],"modeling":[180],"comprise":[183],"gene":[185],"finding,":[186],"protein":[187],"Quantitative":[189],"Structure":[190],"Biodegradibility":[191],"Relationslup":[192],"(QSBR)":[193],"reconstruction":[196],"pathways":[199],"employed":[200],"research":[203],"area.":[204]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-10-15T10:00:46.086208","created_date":"2022-05-12T00:00:00"}