{"id":"https://openalex.org/W4240895940","doi":"https://doi.org/10.1093/nar/gkt940","title":"PDBsum additions","display_name":"PDBsum additions","publication_year":2013,"publication_date":"2013-10-22","ids":{"openalex":"https://openalex.org/W4240895940","doi":"https://doi.org/10.1093/nar/gkt940","pmid":"https://pubmed.ncbi.nlm.nih.gov/24153109","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965036"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt940","doi":"https://doi.org/10.1093/nar/gkt940","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt940","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D292/3681402/gkt940.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D292/3681402/gkt940.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034259396","display_name":"Tjaart de Beer","orcid":"https://orcid.org/0000-0001-5966-6091","observed_orcids":["https://orcid.org/0000-0001-5966-6091"]},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ","GB"],"is_corresponding":false,"raw_author_name":"Tjaart A. P. de Beer","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210120619","https://openalex.org/I70703428"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049457524","display_name":"Karel Berka","orcid":"https://orcid.org/0000-0001-9472-2589","observed_orcids":["https://orcid.org/0000-0001-9472-2589"]},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ","GB"],"is_corresponding":false,"raw_author_name":"Karel Berka","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2 Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2 Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068874280","display_name":"Janet M. Thornton","orcid":"https://orcid.org/0000-0003-0824-4096","observed_orcids":["https://orcid.org/0000-0003-0824-4096"]},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ","GB"],"is_corresponding":false,"raw_author_name":"Janet M. Thornton","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2 Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2 Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026919510","display_name":"Roman A. Laskowski","orcid":"https://orcid.org/0000-0001-5528-0087","observed_orcids":["https://orcid.org/0000-0001-5528-0087"]},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ","GB"],"is_corresponding":true,"raw_author_name":"Roman A. Laskowski","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2 Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and 2 Department of Physical Chemistry, Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palack\u00fd University Olomouc, t\u0159. 17. listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5026919510"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210120619","https://openalex.org/I70703428"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":15.6146,"has_fulltext":true,"cited_by_count":305,"citation_normalized_percentile":{"value":0.99570047,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D292","last_page":"D296"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.8101000189781189,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.8101000189781189,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1768999993801117,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.9670000076293945},{"id":"https://openalex.org/keywords/protein-visualization","display_name":"protein structure visualization","score":0.8339999914169312},{"id":"https://openalex.org/keywords/protein-domain-architecture","display_name":"protein domain architecture","score":0.6399999856948853},{"id":"https://openalex.org/keywords/amino-acid-variants","display_name":"amino acid variants","score":0.8550000190734863},{"id":"https://openalex.org/keywords/protein-tunnels","display_name":"protein tunnels","score":0.9350000023841858},{"id":"https://openalex.org/keywords/protein-dna-interactions","display_name":"protein-DNA interactions","score":0.640999972820282},{"id":"https://openalex.org/keywords/protein-ligand-interactions","display_name":"protein-ligand interactions","score":0.8230000138282776}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8631239533424377},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5915202498435974},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5021934509277344},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.44714435935020447},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.42072904109954834},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.41179215908050537},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3848825693130493},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3236057162284851},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2825077176094055},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.1295294165611267}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkt940","doi":"https://doi.org/10.1093/nar/gkt940","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt940","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D292/3681402/gkt940.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2943172","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965036","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:24153109","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24153109","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3965036","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3965036/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:osti.gov:2469493","doi":null,"is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2469493","pdf_url":"https://www.osti.gov/servlets/purl/2469493","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.785.4237","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.785.4237","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/24/dd/gkt940.PMC3965036.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt940","doi":"https://doi.org/10.1093/nar/gkt940","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt940","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D292/3681402/gkt940.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G102163711","display_name":null,"funder_award_id":"DE\u2010 AC02\u201006CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1682028285","display_name":null,"funder_award_id":"CZ.1.05/2.1.00/03.0058","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G262962599","display_name":null,"funder_award_id":"AC02\u201006CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2857925935","display_name":null,"funder_award_id":"DEAC0206CH11357","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G2933538316","display_name":null,"funder_award_id":"HHSN272200700058C","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G2934285047","display_name":null,"funder_award_id":"HHSN272200700058C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G297113853","display_name":null,"funder_award_id":"CZ.1.05/2.1.00/03.0058","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3029320526","display_name":"Controlling structure and function of biomolecules at the molecular scale: theory meets experiment","funder_award_id":"GBP208/12/G016","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G3757336129","display_name":null,"funder_award_id":"CZ 1.05/2.1.00/03/0058","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G4030212589","display_name":null,"funder_award_id":"contract DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4336488413","display_name":null,"funder_award_id":"HHSN272201200026C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4564258647","display_name":null,"funder_award_id":"CZ.1.07/2.3.00/20.0058","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G5431085921","display_name":"Midwest Center for Structural Genomics","funder_award_id":"U54GM094585","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G618456414","display_name":null,"funder_award_id":"CZ.1.07/2.3.00/20.0058","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G6461011143","display_name":null,"funder_award_id":"CZ.1.07","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"},{"id":"https://openalex.org/G6601593777","display_name":null,"funder_award_id":"HHSN272201200026C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7312179196","display_name":null,"funder_award_id":"HHSN272200700058C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G7505410320","display_name":null,"funder_award_id":"HHSN272201200026C","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4240895940.pdf","grobid_xml":"https://content.openalex.org/works/W4240895940.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1995808589","https://openalex.org/W2012072946","https://openalex.org/W2026258231","https://openalex.org/W2054668663","https://openalex.org/W2062663912","https://openalex.org/W2065283382","https://openalex.org/W2069309953","https://openalex.org/W2081912151","https://openalex.org/W2096317090","https://openalex.org/W2101335101","https://openalex.org/W2110120447","https://openalex.org/W2116496810","https://openalex.org/W2122732537","https://openalex.org/W2137052779","https://openalex.org/W2140387095","https://openalex.org/W2170463736","https://openalex.org/W4210290733","https://openalex.org/W4212920271","https://openalex.org/W4300196896","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2062663912","https://openalex.org/W2110120447","https://openalex.org/W2012072946","https://openalex.org/W2751476102","https://openalex.org/W2054668663","https://openalex.org/W4306655820","https://openalex.org/W1987389940","https://openalex.org/W2096317090","https://openalex.org/W7095155583","https://openalex.org/W2097016219"],"abstract_inverted_index":{"PDBsum,":[0],"http://www.ebi.ac.uk/pdbsum,":[1],"is":[2],"a":[3],"website":[4],"providing":[5],"numerous":[6],"pictorial":[7],"analyses":[8,67,80],"of":[9,22,46,68,76,81],"each":[10],"entry":[11],"in":[12,28,83],"the":[13,19,29,35,60,77],"Protein":[14],"Data":[15],"Bank.":[16],"It":[17],"portrays":[18],"structural":[20],"features":[21],"all":[23],"proteins,":[24],"DNA":[25],"and":[26,85],"ligands":[27],"entry,":[30],"as":[31,33],"well":[32],"depicting":[34],"interactions":[36],"between":[37,62],"them.":[38],"The":[39],"latest":[40],"features,":[41],"described":[42],"here,":[43],"include":[44],"annotation":[45],"human":[47],"protein":[48,64],"sequences":[49],"with":[50],"their":[51],"naturally":[52],"occurring":[53],"amino":[54],"acid":[55],"variants,":[56],"dynamic":[57],"graphs":[58],"showing":[59],"relationships":[61],"related":[63],"domain":[65],"architectures,":[66],"ligand":[69],"binding":[70],"clusters":[71],"across":[72],"different":[73],"experimental":[74],"determinations":[75],"same":[78],"protein,":[79],"tunnels":[82],"proteins":[84],"new":[86],"search":[87],"options.":[88]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":29},{"year":2018,"cited_by_count":36},{"year":2017,"cited_by_count":48},{"year":2016,"cited_by_count":55},{"year":2015,"cited_by_count":43},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":1}],"updated_date":"2026-11-13T13:42:25.865203","created_date":"2022-05-12T00:00:00"}