{"id":"https://openalex.org/W4230875896","doi":"https://doi.org/10.1038/nmeth.1937","title":"Unsupervised pattern discovery in human chromatin structure through genomic segmentation","display_name":"Unsupervised pattern discovery in human chromatin structure through genomic segmentation","publication_year":2012,"publication_date":"2012-03-18","ids":{"openalex":"https://openalex.org/W4230875896","doi":"https://doi.org/10.1038/nmeth.1937"},"language":"en","primary_location":{"id":"doi:10.1038/nmeth.1937","doi":"https://doi.org/10.1038/nmeth.1937","is_oa":false,"landing_page_url":"https://doi.org/10.1038/nmeth.1937","pdf_url":null,"source":{"id":"https://openalex.org/S127827428","display_name":"Nature Methods","issn_l":"1548-7091","issn":["1548-7091","1548-7105"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Methods","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043633648","display_name":"Michael M. Hoffman","orcid":"https://orcid.org/0000-0002-4517-1562","observed_orcids":["https://orcid.org/0000-0002-4517-1562"]},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael M Hoffman","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087171516","display_name":"Orion J. Buske","orcid":"https://orcid.org/0000-0002-9064-092X","observed_orcids":["https://orcid.org/0000-0002-9064-092X"]},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Orion J Buske","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100440120","display_name":"Jie Wang","orcid":"https://orcid.org/0000-0002-7491-7001","observed_orcids":["https://orcid.org/0000-0002-7491-7001"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Wang","raw_affiliation_strings":["Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084369008","display_name":"Zhiping Weng","orcid":"https://orcid.org/0000-0002-3032-7966","observed_orcids":["https://orcid.org/0000-0002-3032-7966"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiping Weng","raw_affiliation_strings":["Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113478221","display_name":"Jeff Bilmes","orcid":"https://orcid.org/0000-0002-7372-8778","observed_orcids":["https://orcid.org/0000-0002-7372-8778"]},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeff A Bilmes","raw_affiliation_strings":["Department of Electrical Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057375933","display_name":"William Stafford Noble","orcid":"https://orcid.org/0000-0001-7283-4715","observed_orcids":["https://orcid.org/0000-0001-7283-4715"]},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William Stafford Noble","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","Department of Genome Sciences, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5057375933"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":{"value":12690,"currency":"USD","value_usd":12690},"apc_paid":null,"fwci":16.0569,"has_fulltext":false,"cited_by_count":583,"citation_normalized_percentile":{"value":0.99628669,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"9","issue":"5","first_page":"473","last_page":"476"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segway","display_name":"Segway","score":0.7409999966621399},{"id":"https://openalex.org/keywords/dynamic-bayesian-networks","display_name":"dynamic Bayesian networks","score":0.7889999747276306},{"id":"https://openalex.org/keywords/chromatin-structure","display_name":"chromatin structure","score":0.7979999780654907},{"id":"https://openalex.org/keywords/histone-modifications","display_name":"histone modifications","score":0.9610000252723694},{"id":"https://openalex.org/keywords/transcription-factor-binding","display_name":"transcription factor binding","score":0.8299999833106995},{"id":"https://openalex.org/keywords/open-chromatin","display_name":"open chromatin","score":0.996999979019165},{"id":"https://openalex.org/keywords/enhancers","display_name":"enhancers","score":0.7080000042915344},{"id":"https://openalex.org/keywords/ctcf-binding","display_name":"CTCF binding","score":0.8519999980926514},{"id":"https://openalex.org/keywords/transcription-start-site","display_name":"transcription start sites","score":0.9399999976158142},{"id":"https://openalex.org/keywords/unsupervised-pattern-discovery","display_name":"unsupervised pattern discovery","score":0.7549999952316284}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6642624139785767},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6515926122665405},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5219266414642334},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.45391279458999634},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3824869394302368},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3666386902332306},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3455720841884613},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.17885950207710266}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1038/nmeth.1937","doi":"https://doi.org/10.1038/nmeth.1937","is_oa":false,"landing_page_url":"https://doi.org/10.1038/nmeth.1937","pdf_url":null,"source":{"id":"https://openalex.org/S127827428","display_name":"Nature Methods","issn_l":"1548-7091","issn":["1548-7091","1548-7105"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Methods","raw_type":"journal-article"},{"id":"pmh:oai:escholarship.umassmed.edu:bioinformatics_pubs-1013","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.umassmed.edu/bioinformatics_pubs/14","pdf_url":null,"source":{"id":"https://openalex.org/S7407064370","display_name":"eScholarship@UMassChan","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Program in Bioinformatics and Integrative Biology Publications","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1267666439","display_name":"Pattern Discovery for comparative epigenomics","funder_award_id":"K99HG006259","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2181710886","display_name":null,"funder_award_id":"NHGRI 004695","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"},{"id":"https://openalex.org/G3102247251","display_name":"EDAC: ENCODE Data Analysis Center","funder_award_id":"U01HG004695","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4057915247","display_name":"Identification of Transcriptional Factor Binding Sites in Human Promoters","funder_award_id":"U01HG004561","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4093781759","display_name":null,"funder_award_id":"NHGRI 006259","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"},{"id":"https://openalex.org/G7353273133","display_name":null,"funder_award_id":"NHGRI 004561","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"}],"funders":[{"id":"https://openalex.org/F4320332505","display_name":"U.S. Public Health Service","ror":"https://ror.org/05xf94514"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W126574481","https://openalex.org/W1544691147","https://openalex.org/W1565545733","https://openalex.org/W1599813781","https://openalex.org/W1976526581","https://openalex.org/W1991133427","https://openalex.org/W2006918465","https://openalex.org/W2037589637","https://openalex.org/W2044826047","https://openalex.org/W2049633694","https://openalex.org/W2084620487","https://openalex.org/W2116113455","https://openalex.org/W2117172387","https://openalex.org/W2127640118","https://openalex.org/W2130416704","https://openalex.org/W2131070718","https://openalex.org/W2137582063","https://openalex.org/W2140952049","https://openalex.org/W2142890842","https://openalex.org/W2144328273","https://openalex.org/W2151821895","https://openalex.org/W2152350018","https://openalex.org/W2158272128","https://openalex.org/W2160699408","https://openalex.org/W2161403045","https://openalex.org/W2162587106","https://openalex.org/W2164025376","https://openalex.org/W2169497879","https://openalex.org/W2169674658","https://openalex.org/W2612240612","https://openalex.org/W4210450218","https://openalex.org/W6991035872","https://openalex.org/W7099666281"],"related_works":["https://openalex.org/W2534863318","https://openalex.org/W3003525926","https://openalex.org/W6922953819","https://openalex.org/W2564599990","https://openalex.org/W3207124649","https://openalex.org/W7096157757","https://openalex.org/W1505658767","https://openalex.org/W2006918465","https://openalex.org/W2049970533","https://openalex.org/W4388074937"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":18},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":40},{"year":2021,"cited_by_count":57},{"year":2020,"cited_by_count":59},{"year":2019,"cited_by_count":47},{"year":2018,"cited_by_count":52},{"year":2017,"cited_by_count":50},{"year":2016,"cited_by_count":50},{"year":2015,"cited_by_count":56},{"year":2014,"cited_by_count":46},{"year":2013,"cited_by_count":33},{"year":2012,"cited_by_count":15}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2022-05-11T00:00:00"}
