{"id":"https://openalex.org/W4221120185","doi":"https://doi.org/10.1101/2022.03.31.486129","title":"Characterization of EDS1-independent plant defense responses against bacterial pathogens using Duckweed/ Pseudomonas pathosystems","display_name":"Characterization of EDS1-independent plant defense responses against bacterial pathogens using Duckweed/ Pseudomonas pathosystems","publication_year":2022,"publication_date":"2022-04-01","ids":{"openalex":"https://openalex.org/W4221120185","doi":"https://doi.org/10.1101/2022.03.31.486129"},"language":"en","primary_location":{"id":"doi:10.1101/2022.03.31.486129","doi":"https://doi.org/10.1101/2022.03.31.486129","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2022.03.31.486129","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.1101/2022.03.31.486129","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022231185","display_name":"Erin L. Baggs","orcid":"https://orcid.org/0000-0003-3076-9489","observed_orcids":["https://orcid.org/0000-0003-3076-9489"]},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E.L Baggs","raw_affiliation_strings":["Department of Plant and Microbial Biology, University of California Berkeley, USA"],"raw_orcid":"https://orcid.org/0000-0003-3076-9489","affiliations":[{"raw_affiliation_string":"Department of Plant and Microbial Biology, University of California Berkeley, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018484806","display_name":"M.B Tiersma","orcid":"https://orcid.org/0000-0003-0530-9640","observed_orcids":["https://orcid.org/0000-0003-0530-9640"]},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.B Tiersma","raw_affiliation_strings":["Department of Plant and Microbial Biology, University of California Berkeley, USA"],"raw_orcid":"https://orcid.org/0000-0003-0530-9640","affiliations":[{"raw_affiliation_string":"Department of Plant and Microbial Biology, University of California Berkeley, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026567832","display_name":"Bradley W. Abramson","orcid":"https://orcid.org/0000-0003-0888-3648","observed_orcids":["https://orcid.org/0000-0003-0888-3648"]},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B.W Abramson","raw_affiliation_strings":["Plant Molecular and Cellular Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Molecular and Cellular Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, USA","institution_ids":["https://openalex.org/I1307098950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065088502","display_name":"Todd P. Michael","orcid":"https://orcid.org/0000-0001-6272-2875","observed_orcids":["https://orcid.org/0000-0001-6272-2875"]},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T.P Michael","raw_affiliation_strings":["Plant Molecular and Cellular Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, USA"],"raw_orcid":"https://orcid.org/0000-0001-6272-2875","affiliations":[{"raw_affiliation_string":"Plant Molecular and Cellular Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, USA","institution_ids":["https://openalex.org/I1307098950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022935542","display_name":"Ksenia V. Krasileva","orcid":"https://orcid.org/0000-0002-1679-0700","observed_orcids":["https://orcid.org/0000-0002-1679-0700"]},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K.V Krasileva","raw_affiliation_strings":["Department of Plant and Microbial Biology, University of California Berkeley, USA"],"raw_orcid":"https://orcid.org/0000-0002-1679-0700","affiliations":[{"raw_affiliation_string":"Department of Plant and Microbial Biology, University of California Berkeley, USA","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5022935542"],"corresponding_institution_ids":["https://openalex.org/I95457486"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10371","display_name":"Immune Response and Inflammation","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/eds1","display_name":"EDS1","score":0.925000011920929},{"id":"https://openalex.org/keywords/plant-immunity","display_name":"plant immunity","score":0.5540000200271606},{"id":"https://openalex.org/keywords/duckweed","display_name":"duckweed","score":0.859000027179718},{"id":"https://openalex.org/keywords/pseudomonas","display_name":"Pseudomonas","score":0.9430000185966492},{"id":"https://openalex.org/keywords/disease-susceptibility","display_name":"disease susceptibility","score":0.5239999890327454},{"id":"https://openalex.org/keywords/effector-triggered-immunity","display_name":"effector-triggered immunity","score":0.996999979019165},{"id":"https://openalex.org/keywords/plant-hormone-response","display_name":"plant hormone response","score":0.5149999856948853}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8724162578582764},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.6328136920928955},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.6326586008071899},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.6144050359725952},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5155637264251709},{"id":"https://openalex.org/C2910254177","wikidata":"https://www.wikidata.org/wiki/Q4215946","display_name":"Plant Immunity","level":5,"score":0.4824688732624054},{"id":"https://openalex.org/C2781463711","wikidata":"https://www.wikidata.org/wiki/Q131143","display_name":"Pseudomonas","level":3,"score":0.4763098955154419},{"id":"https://openalex.org/C2779341262","wikidata":"https://www.wikidata.org/wiki/Q182581","display_name":"Immunity","level":3,"score":0.4757485091686249},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.47153693437576294},{"id":"https://openalex.org/C183570298","wikidata":"https://www.wikidata.org/wiki/Q2004252","display_name":"Plant defense against herbivory","level":3,"score":0.4528138041496277},{"id":"https://openalex.org/C127561419","wikidata":"https://www.wikidata.org/wiki/Q224527","display_name":"Downregulation and upregulation","level":3,"score":0.44558796286582947},{"id":"https://openalex.org/C2780381237","wikidata":"https://www.wikidata.org/wiki/Q311202","display_name":"Pseudomonas syringae","level":3,"score":0.44416987895965576},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3610544800758362},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3275930881500244},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.2410641312599182},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.13629218935966492},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1101/2022.03.31.486129","doi":"https://doi.org/10.1101/2022.03.31.486129","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2022.03.31.486129","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.1101/2022.03.31.486129","doi":"https://doi.org/10.1101/2022.03.31.486129","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2022.03.31.486129","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":111,"referenced_works":["https://openalex.org/W1498516814","https://openalex.org/W1504999642","https://openalex.org/W1576616886","https://openalex.org/W1602896029","https://openalex.org/W1930070181","https://openalex.org/W1930097109","https://openalex.org/W1985103979","https://openalex.org/W1991372398","https://openalex.org/W1991831546","https://openalex.org/W2008814678","https://openalex.org/W2010174706","https://openalex.org/W2011986447","https://openalex.org/W2017507144","https://openalex.org/W2018574744","https://openalex.org/W2025089507","https://openalex.org/W2025150167","https://openalex.org/W2031804135","https://openalex.org/W2045405277","https://openalex.org/W2049809388","https://openalex.org/W2054371593","https://openalex.org/W2062557579","https://openalex.org/W2068007578","https://openalex.org/W2068368014","https://openalex.org/W2068534139","https://openalex.org/W2079267430","https://openalex.org/W2084720613","https://openalex.org/W2088847961","https://openalex.org/W2091027292","https://openalex.org/W2100836382","https://openalex.org/W2102278945","https://openalex.org/W2103692065","https://openalex.org/W2104005232","https://openalex.org/W2106424272","https://openalex.org/W2120772351","https://openalex.org/W2120902911","https://openalex.org/W2122069073","https://openalex.org/W2123158187","https://openalex.org/W2133078434","https://openalex.org/W2133616057","https://openalex.org/W2135230723","https://openalex.org/W2143964569","https://openalex.org/W2154775341","https://openalex.org/W2158581601","https://openalex.org/W2159827069","https://openalex.org/W2180869036","https://openalex.org/W2210844005","https://openalex.org/W2232068000","https://openalex.org/W2253095351","https://openalex.org/W2269502061","https://openalex.org/W2279882219","https://openalex.org/W2324193054","https://openalex.org/W2332863273","https://openalex.org/W2337733029","https://openalex.org/W2505457969","https://openalex.org/W2515614959","https://openalex.org/W2537008587","https://openalex.org/W2551837899","https://openalex.org/W2557012018","https://openalex.org/W2579274099","https://openalex.org/W2596058314","https://openalex.org/W2596680468","https://openalex.org/W2613908520","https://openalex.org/W2769999772","https://openalex.org/W2793094949","https://openalex.org/W2793991964","https://openalex.org/W2799529829","https://openalex.org/W2801790162","https://openalex.org/W2882989368","https://openalex.org/W2884468078","https://openalex.org/W2884759309","https://openalex.org/W2887778815","https://openalex.org/W2888276089","https://openalex.org/W2895704327","https://openalex.org/W2900003829","https://openalex.org/W2901878119","https://openalex.org/W2938574745","https://openalex.org/W2939124290","https://openalex.org/W2944295814","https://openalex.org/W2949841808","https://openalex.org/W2949906131","https://openalex.org/W2956495423","https://openalex.org/W2957310322","https://openalex.org/W2968466434","https://openalex.org/W2971606785","https://openalex.org/W2988396470","https://openalex.org/W2994632914","https://openalex.org/W2995455216","https://openalex.org/W2999148493","https://openalex.org/W3005471402","https://openalex.org/W3010363714","https://openalex.org/W3015177682","https://openalex.org/W3025402515","https://openalex.org/W3044917564","https://openalex.org/W3048100437","https://openalex.org/W3088895332","https://openalex.org/W3094990568","https://openalex.org/W3114697769","https://openalex.org/W3116661844","https://openalex.org/W3125990097","https://openalex.org/W3128519162","https://openalex.org/W3135339687","https://openalex.org/W3135815505","https://openalex.org/W3135840948","https://openalex.org/W3137166911","https://openalex.org/W3185192675","https://openalex.org/W3196504904","https://openalex.org/W3201336326","https://openalex.org/W3202887035","https://openalex.org/W3216934212","https://openalex.org/W4200621019","https://openalex.org/W4225277729"],"related_works":["https://openalex.org/W4294219087","https://openalex.org/W7096943337","https://openalex.org/W2139602252","https://openalex.org/W2790437883","https://openalex.org/W6980818890","https://openalex.org/W1899198141","https://openalex.org/W2038178042","https://openalex.org/W3025402515","https://openalex.org/W2051866530","https://openalex.org/W4312136118"],"abstract_inverted_index":{"Abstract":[0],"ENHANCED":[1],"DISEASE":[2],"SUSCEPTIBILITY":[3],"1":[4],"(EDS1)":[5],"mediates":[6],"the":[7,42,81,88,95,112,147,175,183,194,198,211],"induction":[8],"of":[9,44,52,91,99,104,114,177,179,185,196,200,217],"defense":[10,35,133,205],"responses":[11,74,98,206],"against":[12,36],"pathogens":[13],"in":[14,41,75,155,161,187,210],"most":[15],"land":[16],"plants.":[17],"However,":[18],"it":[19],"has":[20,134],"recently":[21],"been":[22],"shown":[23],"that":[24,55,79,87,103,111,131,207],"a":[25,50],"few":[26],"species":[27,54,202],"have":[28,208],"lost":[29],"EDS1.":[30,45,218],"It":[31],"is":[32],"unknown":[33],"how":[34],"disease":[37],"unfolds":[38],"and":[39,68,94,119,139,143,168,182],"evolves":[40],"absence":[43],"Here":[46],"we":[47,109,171],"utilize":[48],"duckweeds;":[49],"collection":[51],"aquatic":[53],"lack":[56],"EDS1,":[57],"to":[58,71,189,203],"investigate":[59],"this":[60],"question.":[61],"We":[62,85],"successfully":[63],"established":[64],"duckweed-":[65],"Pseudomonas":[66],"pathosystems":[67],"were":[69],"able":[70],"characterize":[72],"pathogen-induced":[73],"an":[76],"immune":[77],"system":[78],"lacks":[80],"EDS1":[82],"signaling":[83],"pathway.":[84],"show":[86,110,157],"copy":[89],"number":[90],"infection-associated":[92],"genes":[93,181],"infection-induced":[96],"transcriptional":[97,144],"duckweeds":[100],"differ":[101],"from":[102],"other":[105],"model":[106,201],"species.":[107,127],"Moreover,":[108],"conservation":[113,176],"canonical":[115],"Microbe":[116],"Triggered":[117,121],"Immunity":[118,122],"Effector":[120],"pathways":[123],"varies":[124],"between":[125,166],"duckweed":[126,169],"This":[128],"work":[129,192],"shows":[130],"pathogen":[132,158],"evolved":[135,209],"along":[136],"different":[137],"trajectories":[138],"uncovers":[140],"alternative":[141],"genomic":[142],"reprogramming.":[145],"Specifically,":[146],"miAMP1":[148],"domain":[149],"containing":[150],"proteins,":[151],"which":[152],"are":[153],"absent":[154],"Arabidopsis,":[156],"responsive":[159],"upregulation":[160,178],"duckweeds.":[162],"Despite":[163],"such":[164],"divergence":[165],"Arabidopsis":[167],"species,":[170],"find":[172],"evidence":[173],"for":[174],"certain":[180],"role":[184],"hormones":[186],"response":[188],"disease.":[190],"Our":[191],"highlights":[193],"importance":[195],"expanding":[197],"pool":[199],"study":[204],"plant":[212],"kingdom,":[213],"including":[214],"those":[215],"independent":[216]},"counts_by_year":[],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2022-04-03T00:00:00"}
