{"id":"https://openalex.org/W4206338751","doi":"https://doi.org/10.1093/gbe/evab287","title":"Global Emergence and Dissemination of Neisseria gonorrhoeae ST-9363 Isolates with Reduced Susceptibility to Azithromycin","display_name":"Global Emergence and Dissemination of Neisseria gonorrhoeae ST-9363 Isolates with Reduced Susceptibility to Azithromycin","publication_year":2021,"publication_date":"2021-12-25","ids":{"openalex":"https://openalex.org/W4206338751","doi":"https://doi.org/10.1093/gbe/evab287","pmid":"https://pubmed.ncbi.nlm.nih.gov/34962987","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/8778598"},"language":"en","primary_location":{"id":"doi:10.1093/gbe/evab287","doi":"https://doi.org/10.1093/gbe/evab287","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gbe/evab287","pdf_url":null,"source":{"id":"https://openalex.org/S10195028","display_name":"Genome Biology and Evolution","issn_l":"1759-6653","issn":["1759-6653"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology and Evolution","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/gbe/evab287","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008346659","display_name":"Sandeep J. Joseph","orcid":"https://orcid.org/0000-0003-0697-2487","observed_orcids":["https://orcid.org/0000-0003-0697-2487"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sandeep J Joseph","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":"https://orcid.org/0000-0003-0697-2487","affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045718228","display_name":"Jesse C. Thomas","orcid":"https://orcid.org/0000-0002-9618-4662","observed_orcids":["https://orcid.org/0000-0002-9618-4662"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jesse C Thomas","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048177796","display_name":"Matthew W. Schmerer","orcid":"https://orcid.org/0000-0002-6756-1756","observed_orcids":["https://orcid.org/0000-0002-6756-1756"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew W Schmerer","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018316566","display_name":"John C. Cartee","orcid":"https://orcid.org/0000-0003-2611-8085","observed_orcids":["https://orcid.org/0000-0003-2611-8085"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John C Cartee","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010967013","display_name":"Sancta B. St. Cyr","orcid":"https://orcid.org/0000-0002-1377-4051","observed_orcids":["https://orcid.org/0000-0002-1377-4051"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sancta St Cyr","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012082607","display_name":"Karen Schlanger","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen Schlanger","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041952304","display_name":"Ellen Neumeister Kersh","orcid":"https://orcid.org/0000-0003-3819-0324","observed_orcids":["https://orcid.org/0000-0003-3819-0324"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ellen N Kersh","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040905123","display_name":"Brian H. Raphael","orcid":"https://orcid.org/0000-0003-2778-2623","observed_orcids":["https://orcid.org/0000-0003-2778-2623"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian H Raphael","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047790247","display_name":"Kim M. Gernert","orcid":"https://orcid.org/0000-0003-0258-5172","observed_orcids":["https://orcid.org/0000-0003-0258-5172"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kim M Gernert","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Antimicrobial Resistant Neisseria gonorrhoeae Working Group","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Antimicrobial Resistant Neisseria gonorrhoeae Working Group","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037884852","display_name":"Sopheay Hun","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sopheay Hun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026774529","display_name":"Chi N. Hua","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chi Hua","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ryan Ruiz","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ryan Ruiz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013287736","display_name":"Olusegun O. Soge","orcid":"https://orcid.org/0000-0002-8504-2319","observed_orcids":["https://orcid.org/0000-0002-8504-2319"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Olusegun O Soge","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048248160","display_name":"Catherine E Dominguez","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Catherine Dominguez","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070674744","display_name":"Jillian Loomis","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jillian Loomis","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055099180","display_name":"Ami S. Patel","orcid":"https://orcid.org/0000-0001-9928-8662","observed_orcids":["https://orcid.org/0000-0001-9928-8662"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ami Patel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101989330","display_name":"Jenny Zhang","orcid":"https://orcid.org/0000-0003-0853-9978","observed_orcids":["https://orcid.org/0000-0003-0853-9978"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jenny Zhang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031817964","display_name":"Tamara Baldwin","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tamara Baldwin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100367583","display_name":"Chun Wang","orcid":"https://orcid.org/0000-0002-8233-6055","observed_orcids":["https://orcid.org/0000-0002-8233-6055"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chun Wang","raw_affiliation_strings":["Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of STD Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":null,"display_name":"John Leavitt","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John Leavitt","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034025177","display_name":"Christina Moore","orcid":"https://orcid.org/0000-0002-6212-6448","observed_orcids":["https://orcid.org/0000-0002-6212-6448"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christina Moore","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012150570","display_name":"Christian Whelen","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian Whelen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5112507511","display_name":"Pamela O'Brien","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pamela O'Brien","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5008346659"],"corresponding_institution_ids":["https://openalex.org/I1289490764"],"apc_list":{"value":2635,"currency":"USD","value_usd":2635},"apc_paid":{"value":2635,"currency":"USD","value_usd":2635},"fwci":1.5874,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.81650848,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"14","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.38920000195503235,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.38920000195503235,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.3422999978065491,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.1453000009059906,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neisseria-gonorrhoeae","display_name":"Neisseria gonorrhoeae","score":0.9950000047683716},{"id":"https://openalex.org/keywords/mtrr","display_name":"MTRR","score":0.5950000286102295},{"id":"https://openalex.org/keywords/antimicrobial-resistance","display_name":"antimicrobial resistance","score":0.7250000238418579},{"id":"https://openalex.org/keywords/clonal-expansion","display_name":"clonal expansion","score":0.8790000081062317},{"id":"https://openalex.org/keywords/population-structure","display_name":"population structure","score":0.6489999890327454},{"id":"https://openalex.org/keywords/phylodynamics","display_name":"phylodynamics","score":0.781000018119812},{"id":"https://openalex.org/keywords/recombination","display_name":"recombination","score":0.8849999904632568},{"id":"https://openalex.org/keywords/gonorrhea","display_name":"gonorrhea","score":0.5370000004768372}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8472603559494019},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.7396295070648193},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.6407710909843445},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5533440709114075},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5151073336601257},{"id":"https://openalex.org/C2778087339","wikidata":"https://www.wikidata.org/wiki/Q18029587","display_name":"MTRR","level":5,"score":0.501293420791626},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4865261912345886},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4367813467979431},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4257334768772125},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41187208890914917},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.24681618809700012},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2127516269683838},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.13223817944526672},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C43563269","wikidata":"https://www.wikidata.org/wiki/Q424709","display_name":"Methylenetetrahydrofolate reductase","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D006069","descriptor_name":"Gonorrhea","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D006069","descriptor_name":"Gonorrhea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006069","descriptor_name":"Gonorrhea","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009344","descriptor_name":"Neisseria gonorrhoeae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017963","descriptor_name":"Azithromycin","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/gbe/evab287","doi":"https://doi.org/10.1093/gbe/evab287","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gbe/evab287","pdf_url":null,"source":{"id":"https://openalex.org/S10195028","display_name":"Genome Biology and Evolution","issn_l":"1759-6653","issn":["1759-6653"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology and Evolution","raw_type":"journal-article"},{"id":"doi:10.1101/2021.08.05.455198","doi":"https://doi.org/10.1101/2021.08.05.455198","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2021.08.05.455198","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2021/08/06/2021.08.05.455198.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:8778598","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8778598","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biol Evol","raw_type":"Text"},{"id":"pmid:34962987","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34962987","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome biology and evolution","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/gbe/evab287","doi":"https://doi.org/10.1093/gbe/evab287","is_oa":true,"landing_page_url":"https://doi.org/10.1093/gbe/evab287","pdf_url":null,"source":{"id":"https://openalex.org/S10195028","display_name":"Genome Biology and Evolution","issn_l":"1759-6653","issn":["1759-6653"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-d","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology and Evolution","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8199999928474426,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W1970215763","https://openalex.org/W1972145956","https://openalex.org/W2014538668","https://openalex.org/W2033115241","https://openalex.org/W2036897871","https://openalex.org/W2041282815","https://openalex.org/W2055043387","https://openalex.org/W2092103784","https://openalex.org/W2092209322","https://openalex.org/W2115012618","https://openalex.org/W2120902911","https://openalex.org/W2124165778","https://openalex.org/W2141052558","https://openalex.org/W2144410236","https://openalex.org/W2153552852","https://openalex.org/W2159954944","https://openalex.org/W2162847806","https://openalex.org/W2164203391","https://openalex.org/W2290768068","https://openalex.org/W2304883727","https://openalex.org/W2322358787","https://openalex.org/W2513727910","https://openalex.org/W2520703081","https://openalex.org/W2528399578","https://openalex.org/W2532203913","https://openalex.org/W2577533595","https://openalex.org/W2725319213","https://openalex.org/W2791546336","https://openalex.org/W2794250117","https://openalex.org/W2801159594","https://openalex.org/W2803800822","https://openalex.org/W2807308836","https://openalex.org/W2883251903","https://openalex.org/W2886375474","https://openalex.org/W2889693598","https://openalex.org/W2891078715","https://openalex.org/W2908968645","https://openalex.org/W2912288210","https://openalex.org/W2915737634","https://openalex.org/W2915979589","https://openalex.org/W2917419657","https://openalex.org/W2917733958","https://openalex.org/W2949839246","https://openalex.org/W2950675215","https://openalex.org/W2951744341","https://openalex.org/W2952412926","https://openalex.org/W2963541510","https://openalex.org/W2966082154","https://openalex.org/W2969536729","https://openalex.org/W2969866109","https://openalex.org/W2971827628","https://openalex.org/W2990573686","https://openalex.org/W3002816332","https://openalex.org/W3004516512","https://openalex.org/W3005546911","https://openalex.org/W3007194635","https://openalex.org/W3008648139","https://openalex.org/W3047007341","https://openalex.org/W3095439172","https://openalex.org/W3103994142","https://openalex.org/W3111151712","https://openalex.org/W3133427779","https://openalex.org/W3160332587","https://openalex.org/W3161462149","https://openalex.org/W4210955077","https://openalex.org/W4242318543","https://openalex.org/W4245100871","https://openalex.org/W4245249007","https://openalex.org/W6688327921"],"related_works":["https://openalex.org/W7162298049","https://openalex.org/W2304883727","https://openalex.org/W3178556267","https://openalex.org/W3047007341","https://openalex.org/W4375866570","https://openalex.org/W2915979589","https://openalex.org/W2744735270","https://openalex.org/W4403705430","https://openalex.org/W2501329550","https://openalex.org/W3133427779"],"abstract_inverted_index":{"Neisseria":[0],"gonorrhoeae":[1],"multilocus":[2],"sequence":[3],"type":[4],"(ST)":[5],"9363":[6],"core-genogroup":[7,35,54,72,162],"isolates":[8],"have":[9,76,105],"been":[10],"associated":[11],"with":[12,64,123,127,163],"reduced":[13],"azithromycin":[14],"susceptibility":[15],"(AZMrs)":[16],"and":[17,43,61,107,118,143,150,190,214,225],"show":[18],"evidence":[19],"of":[20,33,45,52,140,160,174,227],"clonal":[21,158],"expansion":[22,159],"in":[23,80,93,120,165,193,210],"the":[24,41,81,86,94,121,153,157,166,194,211,222],"United":[25,167,212],"States.":[26,168],"Here,":[27],"we":[28,84,186],"analyze":[29],"a":[30,199,206],"global":[31,49],"collection":[32],"ST-9363":[34,53,71,204],"genomes":[36],"to":[37,75,97,104,112,202,220,235],"shed":[38],"light":[39],"on":[40],"emergence":[42,226],"dissemination":[44],"this":[46,161,228],"strain.":[47],"The":[48,100],"population":[50],"structure":[51],"falls":[55],"into":[56,115,131],"three":[57,87],"lineages:":[58],"Basal,":[59],"European,":[60],"North":[62,116],"American;":[63],"32":[65],"clades":[66,175],"within":[67],"all":[68],"lineages.":[69],"Although,":[70],"is":[73,218],"inferred":[74],"originated":[77],"from":[78,91,109],"Asia":[79],"mid-19th":[82],"century;":[83],"estimate":[85],"modern":[88],"lineages":[89],"emerged":[90,106],"Europe":[92],"late":[95],"1970s":[96],"early":[98],"1980s.":[99],"European":[101],"lineage":[102,209],"appears":[103],"expanded":[108],"around":[110],"1986":[111],"1998,":[113],"spreading":[114],"America":[117],"Oceania":[119],"mid-2000s":[122],"multiple":[124,128],"introductions,":[125],"along":[126],"secondary":[129],"reintroductions":[130],"Europe.":[132],"Our":[133],"results":[134],"suggest":[135],"two":[136],"separate":[137],"acquisition":[138],"events":[139],"mosaic":[141],"mtrR":[142,144],"promoter":[145],"alleles:":[146],"first":[147],"during":[148,152],"2009-2011":[149],"again":[151],"2012-2013":[154],"time,":[155],"facilitating":[156],"AZMrs":[164],"By":[169],"tracking":[170],"phylodynamic":[171],"evolutionary":[172],"trajectories":[173],"that":[176],"share":[177],"distinct":[178],"demography":[179],"as":[180,182,205,239],"well":[181],"population-based":[183],"genomic":[184],"statistics,":[185],"demonstrate":[187],"how":[188],"recombination":[189],"selective":[191],"pressures":[192],"mtrCDE":[195],"efflux":[196],"operon":[197],"granted":[198],"fitness":[200],"advantage":[201],"establish":[203],"successful":[207],"gonococcal":[208],"States":[213],"elsewhere.":[215],"Although":[216],"it":[217,231,240],"difficult":[219],"pinpoint":[221],"exact":[223],"timing":[224],"young":[229],"core-genogroup,":[230],"remains":[232],"critically":[233],"important":[234],"continue":[236],"monitoring":[237],"it,":[238],"could":[241],"acquire":[242],"additional":[243],"resistance":[244],"markers.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2022-01-25T00:00:00"}